prot_H-elongata_contig130678.2222.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig130678.2222.1
Unique Name	prot_H-elongata_contig130678.2222.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	108

Homology

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.100e-29
Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 0

Query:    4 EPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGR 106
            + VDCDFL+VGAGSSGCVLASRLVR GLKVL+VEKG  DA+ L ++V RPS ++   +    L E F TVPQ  L  R + A  G GGGGSSN+N GLY RGR
Sbjct:   10 DTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGR 112

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A0Q6TCZ3_9BURK (GMC family oxidoreductase n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A0Q6TCZ3_9BURK)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-13
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 0

Query:    9 DFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETV-TGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 108
            D+++VGAGS+GCV+A RL++ G  VL++E G TDA+K  ++   P+ F+  + T RS + E   T PQ +   R+M+ P+G   GG S++N  +Y RG  A
Sbjct:    3 DYIVVGAGSAGCVIAHRLIKAGHSVLLLEAGPTDASKFVKM---PATFVRVIGTERSWVYE---TTPQQHANGRKMYVPQGRMNGGGSSLNAMVYIRGAAA 97

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A7C8HKW1_9CAUL (Choline dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C8HKW1_9CAUL)

HSP 1 Score: 74.7 bits (182), Expect = 2.110e-13
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0

Query:    9 DFLLVGAGSSGCVLASRLVRRGL-KVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 105
            D+++VGAGS+GCVLA+RL   G  +V ++E G  D++ L R+     + + T   ++P    F T PQ +  NRRM  PRG G GGSS+ING +Y RG
Sbjct:   11 DYVIVGAGSAGCVLAARLSEDGAARVALLEAGPKDSSLLVRMPAGAGRLIPT---KNPQNWGFWTEPQAHCDNRRMFWPRGKGWGGSSSINGMIYIRG 105

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1E4GT31_9CAUL (Choline dehydrogenase n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GT31_9CAUL)

HSP 1 Score: 74.3 bits (181), Expect = 2.880e-13
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 0

Query:    9 DFLLVGAGSSGCVLASRLVRRGL-KVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 105
            D++++GAGS+GCVLA+RL   G  KVL++E G  D + +   V  P+     ++ ++P    F T P+ NL NR++  PRG G GGSS+ING +Y RG
Sbjct:    6 DYIVIGAGSAGCVLANRLTEDGTTKVLLLEAGGKDKSLM---VTMPAGVGGLISKQNPFNWGFWTEPEPNLDNRKLWWPRGKGWGGSSSINGMIYIRG 100

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A7W6DPT1_9RHOB (Choline dehydrogenase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A7W6DPT1_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 2.880e-13
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 0

Query:    2 EVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 108
            + +  D D++++GAGS+GCVLA+RL   G +VL++E G  DA     ++  P + +E     +     + TVPQ N  NR+++ PRG   GGSS++NG +Y RG  +
Sbjct:   41 DAQETDHDYVIIGAGSAGCVLANRLTEDGARVLLLEAGGPDA---DAMISTPMRLIEL--WGTDFDWGYQTVPQENAANRQLYWPRGKTLGGSSSLNGMIYVRGNAS 142

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1S8FCU1_9BURK (GMC family oxidoreductase n=6 Tax=Comamonadaceae TaxID=80864 RepID=A0A1S8FCU1_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 3.910e-13
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 0

Query:    1 MEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETV-TGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 108
            ME + VD  +++VGAGS+GCV+A RLV+ G  VL++E G TDA+K  ++   P+ F+  + T RS + E   TV Q +   R+M+ P+G   GG S++N  +Y RG  A
Sbjct:    1 METQVVD--YIVVGAGSAGCVIAYRLVKAGHSVLLLEAGPTDASKFVKM---PATFVRVIGTERSWIYE---TVAQPHANGRKMYVPQGRMTGGGSSLNAMVYIRGTAA 101

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A520TWP5_9GAMM (Choline dehydrogenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A520TWP5_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 3.920e-13
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0

Query:    9 DFLLVGAGSSGCVLASRLVRRGLK-VLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 105
            D+++VGAGSSGCV+A+RL   G K VLI+E G  D       +  PS F + V  +S L   F T P+    NR+++ PRG G GGSS+IN  +Y RG
Sbjct:    6 DYVVVGAGSSGCVMANRLSEDGKKSVLILEAGGKDT---NFFIHMPSGFSQIVPNKSDLNYGFETEPEETTDNRKLYWPRGRGWGGSSSINAMVYIRG 100

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A4R1YTY7_9RHOB (Choline dehydrogenase n=1 Tax=Rhodovulum steppense TaxID=540251 RepID=A0A4R1YTY7_9RHOB)

HSP 1 Score: 73.6 bits (179), Expect = 5.370e-13
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query:    6 VDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 105
            ++ DF++VGAGS+GCVLASRL   G  VL++E G TDA   G L+  P+  L      +     F T P+ +L  RR+  PRG   GGSS+ING +Y RG
Sbjct:    1 MEADFVIVGAGSAGCVLASRLSETGASVLVIEHGGTDA---GPLIQMPAA-LSYPMNMARYDWGFRTEPEPHLGGRRLACPRGKVIGGSSSINGMVYVRG 96

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1V1PTS8_9PROT (Choline dehydrogenase n=1 Tax=alpha proteobacterium U9-1i TaxID=1605283 RepID=A0A1V1PTS8_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 5.370e-13
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    9 DFLLVGAGSSGCVLASRLVRRG-LKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 105
            D+++VGAGS+GCVLA+RL     +KV I+E G  +A   G LV  P+     +  +      F TVPQ ++  RR++ PRG G GGSS+ING +Y RG
Sbjct:   11 DYVIVGAGSAGCVLANRLSEDPTVKVAILEAGGANA---GLLVKMPAGVGNLIASKGASNWGFETVPQAHMDGRRLYQPRGRGWGGSSSINGMIYIRG 105

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BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A3E0LJ55_9CHRO (Choline dehydrogenase n=6 Tax=Bacteria TaxID=2 RepID=A0A3E0LJ55_9CHRO)

HSP 1 Score: 72.8 bits (177), Expect = 9.990e-13
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query:    9 DFLLVGAGSSGCVLASRLVRR-GLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 105
            D++++GAGS+GCVLA+RL     ++VL++E G  D + L R+   P+     + G++     F T PQ +L NR ++ PRG G GGSS+ING +Y RG
Sbjct:   11 DYIIIGAGSAGCVLANRLSEDPSVRVLVLEAGGRDNSFLVRM---PAGVGTLIKGKNAHNWAFTTEPQTHLNNRPLYWPRGKGWGGSSSINGMIYIRG 105

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot

BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2G8_ECTSI	2.100e-29	61.17	Glucose-methanol-choline oxidoreductase n=2 Tax=Ec...	[more]
A0A0Q6TCZ3_9BURK	1.530e-13	41.58	GMC family oxidoreductase n=3 Tax=Burkholderiales ...	[more]
A0A7C8HKW1_9CAUL	2.110e-13	44.90	Choline dehydrogenase n=2 Tax=Alphaproteobacteria ...	[more]
A0A1E4GT31_9CAUL	2.880e-13	43.88	Choline dehydrogenase n=1 Tax=Phenylobacterium sp....	[more]
A0A7W6DPT1_9RHOB	2.880e-13	38.32	Choline dehydrogenase n=3 Tax=Rhodobacterales TaxI...	[more]
A0A1S8FCU1_9BURK	3.910e-13	42.20	GMC family oxidoreductase n=6 Tax=Comamonadaceae T...	[more]
A0A520TWP5_9GAMM	3.920e-13	45.92	Choline dehydrogenase n=2 Tax=Gammaproteobacteria ...	[more]
A0A4R1YTY7_9RHOB	5.370e-13	46.00	Choline dehydrogenase n=1 Tax=Rhodovulum steppense...	[more]
A0A1V1PTS8_9PROT	5.370e-13	44.90	Choline dehydrogenase n=1 Tax=alpha proteobacteriu...	[more]
A0A3E0LJ55_9CHRO	9.990e-13	42.86	Choline dehydrogenase n=6 Tax=Bacteria TaxID=2 Rep...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000172	Glucose-methanol-choline oxidoreductase, N-terminal	PFAM	PF00732	GMC_oxred_N	coord: 9..106 e-value: 2.0E-12 score: 47.1
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 2..108 e-value: 8.0E-22 score: 79.9
IPR036188	FAD/NAD(P)-binding domain superfamily	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 5..105
None	No IPR available	PANTHER	PTHR11552	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	coord: 8..105
None	No IPR available	PANTHER	PTHR11552:SF147	CHOLINE DEHYDROGENASE, MITOCHONDRIAL	coord: 8..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig130678	contig	H-elongata_contig130678:427..750 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig130678.2222.1	mRNA_H-elongata_contig130678.2222.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig130678 427..753 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig130678.2222.1 ID=prot_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLV
LRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGG
LYFRGRCA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000172	GMC_OxRdtase_N
IPR036188	FAD/NAD-bd_sf