mRNA_H-elongata_contig12977.2171.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: D7G8H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H8_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.330e-33 Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 1
Query: 16 IQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAGQT 300
+QV+S NEARAYGTGE I IDV+FN +V L+GEPTLVLETGVFNQEV L S+ N+TLTF+YVV+EGDS+ DL+Y SSTAL LNGG L R + T
Sbjct: 459 VQVDSPNEARAYGTGEVIKIDVVFNQDVTLEGEPTLVLETGVFNQEVDLLSSGNQTLTFKYVVQEGDSTSDLEYASSTALNLNGGALYRTSENAT 553
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A0A7Y6NU37_9GAMM (Tandem-95 repeat protein n=3 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A7Y6NU37_9GAMM) HSP 1 Score: 84.3 bits (207), Expect = 1.040e-16 Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 22 VESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
V SS Y G+ I I V F+ N+ + G PTL LETG ++ VH S ++ +TF Y VK GD S DLDY+S+TAL+LNGG + +D AG
Sbjct: 921 VSSSKADGTYKVGDEIAIQVTFSENITVTGAPTLTLETGDVDRVVHFTSVSDSVVTFNYTVKTGDVSSDLDYISTTALSLNGGTI-KDAAG 1010
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: UPI001117F1AC (cadherin repeat domain-containing protein n=1 Tax=Aeromonas media TaxID=651 RepID=UPI001117F1AC) HSP 1 Score: 81.3 bits (199), Expect = 1.210e-15 Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
T V V SS A YG GE I I V F+ V + G P L LETG ++ + ++ + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 712 TAPVVSGVSSSTAAGTYGVGEVISIQVSFSEAVTVTGMPQLTLETGTTDRTIDYVSGSGSNTLTFNYTVQAGDTSADLDYLSSGALGLNGGTI-RDAAG 809
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A0A7Z2Z6F4_AERHY (Cadherin repeat domain-containing protein n=2 Tax=Aeromonas TaxID=642 RepID=A0A7Z2Z6F4_AERHY) HSP 1 Score: 81.3 bits (199), Expect = 1.230e-15 Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
T V V SS A YG GE I I V F+ V + G P L LETG ++ + ++ + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 1257 TAPVVSGVSSSTAAGTYGVGEVISIQVSFSEAVTVTGMPQLTLETGTTDRTIDYVSGSGSNTLTFNYTVQAGDTSADLDYLSSGALGLNGGTI-RDAAG 1354
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: UPI0016805FDF (Ig-like domain-containing protein n=1 Tax=Pseudoalteromonas sp. S16_S37 TaxID=2720228 RepID=UPI0016805FDF) HSP 1 Score: 81.3 bits (199), Expect = 1.250e-15 Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 22 VESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
V SS Y G+ I I V F+ N+ + G PTL LETG ++ V+ SA++ +TF Y V+ GD S DLDY+S+TAL LNGG + +D AG
Sbjct: 677 VSSSKADGTYKVGDEIAIQVTFSENIAVTGTPTLTLETGDVDRVVNFTSASDSVVTFNYTVQTGDVSGDLDYVSTTALNLNGGTI-KDTAG 766
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A0A2E2BGQ9_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E2BGQ9_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 1.600e-15 Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 16 IQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNR-TLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAGQTE 303
++ S NE Y G+ I++ + F+ NVV+ G P L LETG ++ + S + TLTF Y+V+EGD SPDL Y+SS+AL+LNGG ++ N +E
Sbjct: 73 VKASSLNEDGFYKIGDQIVVALTFSRNVVVTGTPQLTLETGSVDKVANYSSGSESLTLTFNYIVEEGDLSPDLKYVSSSALSLNGGSIKDQNNNDSE 169
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: V9ZYD9_AERHY (Cadherin domain-containing protein n=2 Tax=Aeromonas hydrophila TaxID=644 RepID=V9ZYD9_AERHY) HSP 1 Score: 79.3 bits (194), Expect = 5.900e-15 Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
T V V SS A YG G I I V F+ V + G P L LETG ++ + ++ + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 2091 TAPVVSGVSSSTAAGTYGVGSVISIQVSFSEAVTVTGMPQLTLETGTTDRTINYVSGSGSNTLTFNYTVQAGDTSADLDYLSSGALGLNGGTI-RDAAG 2188
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A4CY53_SYNPV (Large exoprotein involved in heme utilization or adhesion n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CY53_SYNPV) HSP 1 Score: 79.3 bits (194), Expect = 5.990e-15 Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 19 QVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQE-VHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
+V+S+ +YG G I + V F+ +VV+ G P L LETG +++ + + TLTF+Y+V++GDSS DLD LSS+AL LNGG ++ D AG
Sbjct: 7418 RVDSTTADGSYGIGSVINLTVTFDEDVVVTGTPALQLETGTIDRKAIFTSGSGTNTLTFQYIVQDGDSSADLDQLSSSALALNGGTIQ-DAAG 7509
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A4CY56_SYNPV (VCBS protein n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CY56_SYNPV) HSP 1 Score: 79.0 bits (193), Expect = 8.120e-15 Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 22 VESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQE-VHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
V+S+ +YG G I + V F+ +VV+ G P L LETG +++ + + TLTF+Y+V++GDSS DLD LSS+AL LNGG ++ D AG
Sbjct: 3070 VDSTTADGSYGIGSVINLTVTFDEDVVVTGTPALQLETGTIDRKAIFTSGSGTNTLTFQYIVQDGDSSADLDQLSSSALALNGGTIQ-DAAG 3160
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: UPI00191E7EEF (cadherin repeat domain-containing protein n=2 Tax=Aeromonas TaxID=642 RepID=UPI00191E7EEF) HSP 1 Score: 78.6 bits (192), Expect = 1.100e-14 Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
TT + SS +YG G I I V F+ V + G P L LETG ++ + ++ + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 1884 TTAPVVSGVSSTAVGSYGVGAVISIQVSFSETVTVTGTPQLTLETGATDRTINYVSGSGSNTLTFNYTVQAGDTSADLDYLSSAALGLNGGTI-RDAAG 1981 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12977.2171.1 >prot_H-elongata_contig12977.2171.1 ID=prot_H-elongata_contig12977.2171.1|Name=mRNA_H-elongata_contig12977.2171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQback to top mRNA from alignment at H-elongata_contig12977:650..1584+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12977.2171.1 ID=mRNA_H-elongata_contig12977.2171.1|Name=mRNA_H-elongata_contig12977.2171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig12977:650..1584+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12977:650..1584+ >mRNA_H-elongata_contig12977.2171.1 ID=mRNA_H-elongata_contig12977.2171.1|Name=mRNA_H-elongata_contig12977.2171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig12977:650..1584+ (Himanthalia elongata Himel1 dioecious)back to top |