mRNA_H-elongata_contig12977.2171.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12977.2171.1
Unique NamemRNA_H-elongata_contig12977.2171.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: D7G8H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.330e-33
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   16 IQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAGQT 300
            +QV+S NEARAYGTGE I IDV+FN +V L+GEPTLVLETGVFNQEV L S+ N+TLTF+YVV+EGDS+ DL+Y SSTAL LNGG L R +   T
Sbjct:  459 VQVDSPNEARAYGTGEVIKIDVVFNQDVTLEGEPTLVLETGVFNQEVDLLSSGNQTLTFKYVVQEGDSTSDLEYASSTALNLNGGALYRTSENAT 553          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A0A7Y6NU37_9GAMM (Tandem-95 repeat protein n=3 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A7Y6NU37_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 1.040e-16
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   22 VESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            V SS     Y  G+ I I V F+ N+ + G PTL LETG  ++ VH  S ++  +TF Y VK GD S DLDY+S+TAL+LNGG + +D AG
Sbjct:  921 VSSSKADGTYKVGDEIAIQVTFSENITVTGAPTLTLETGDVDRVVHFTSVSDSVVTFNYTVKTGDVSSDLDYISTTALSLNGGTI-KDAAG 1010          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: UPI001117F1AC (cadherin repeat domain-containing protein n=1 Tax=Aeromonas media TaxID=651 RepID=UPI001117F1AC)

HSP 1 Score: 81.3 bits (199), Expect = 1.210e-15
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            T  V   V SS  A  YG GE I I V F+  V + G P L LETG  ++ + ++  + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct:  712 TAPVVSGVSSSTAAGTYGVGEVISIQVSFSEAVTVTGMPQLTLETGTTDRTIDYVSGSGSNTLTFNYTVQAGDTSADLDYLSSGALGLNGGTI-RDAAG 809          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A0A7Z2Z6F4_AERHY (Cadherin repeat domain-containing protein n=2 Tax=Aeromonas TaxID=642 RepID=A0A7Z2Z6F4_AERHY)

HSP 1 Score: 81.3 bits (199), Expect = 1.230e-15
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            T  V   V SS  A  YG GE I I V F+  V + G P L LETG  ++ + ++  + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 1257 TAPVVSGVSSSTAAGTYGVGEVISIQVSFSEAVTVTGMPQLTLETGTTDRTIDYVSGSGSNTLTFNYTVQAGDTSADLDYLSSGALGLNGGTI-RDAAG 1354          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: UPI0016805FDF (Ig-like domain-containing protein n=1 Tax=Pseudoalteromonas sp. S16_S37 TaxID=2720228 RepID=UPI0016805FDF)

HSP 1 Score: 81.3 bits (199), Expect = 1.250e-15
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   22 VESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            V SS     Y  G+ I I V F+ N+ + G PTL LETG  ++ V+  SA++  +TF Y V+ GD S DLDY+S+TAL LNGG + +D AG
Sbjct:  677 VSSSKADGTYKVGDEIAIQVTFSENIAVTGTPTLTLETGDVDRVVNFTSASDSVVTFNYTVQTGDVSGDLDYVSTTALNLNGGTI-KDTAG 766          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A0A2E2BGQ9_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E2BGQ9_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 1.600e-15
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   16 IQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEVHLKSANNR-TLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAGQTE 303
            ++  S NE   Y  G+ I++ + F+ NVV+ G P L LETG  ++  +  S +   TLTF Y+V+EGD SPDL Y+SS+AL+LNGG ++  N   +E
Sbjct:   73 VKASSLNEDGFYKIGDQIVVALTFSRNVVVTGTPQLTLETGSVDKVANYSSGSESLTLTFNYIVEEGDLSPDLKYVSSSALSLNGGSIKDQNNNDSE 169          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: V9ZYD9_AERHY (Cadherin domain-containing protein n=2 Tax=Aeromonas hydrophila TaxID=644 RepID=V9ZYD9_AERHY)

HSP 1 Score: 79.3 bits (194), Expect = 5.900e-15
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            T  V   V SS  A  YG G  I I V F+  V + G P L LETG  ++ + ++  + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 2091 TAPVVSGVSSSTAAGTYGVGSVISIQVSFSEAVTVTGMPQLTLETGTTDRTINYVSGSGSNTLTFNYTVQAGDTSADLDYLSSGALGLNGGTI-RDAAG 2188          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A4CY53_SYNPV (Large exoprotein involved in heme utilization or adhesion n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CY53_SYNPV)

HSP 1 Score: 79.3 bits (194), Expect = 5.990e-15
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   19 QVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQE-VHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            +V+S+    +YG G  I + V F+ +VV+ G P L LETG  +++ +    +   TLTF+Y+V++GDSS DLD LSS+AL LNGG ++ D AG
Sbjct: 7418 RVDSTTADGSYGIGSVINLTVTFDEDVVVTGTPALQLETGTIDRKAIFTSGSGTNTLTFQYIVQDGDSSADLDQLSSSALALNGGTIQ-DAAG 7509          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: A4CY56_SYNPV (VCBS protein n=1 Tax=Synechococcus sp. (strain WH7805) TaxID=59931 RepID=A4CY56_SYNPV)

HSP 1 Score: 79.0 bits (193), Expect = 8.120e-15
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   22 VESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQE-VHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            V+S+    +YG G  I + V F+ +VV+ G P L LETG  +++ +    +   TLTF+Y+V++GDSS DLD LSS+AL LNGG ++ D AG
Sbjct: 3070 VDSTTADGSYGIGSVINLTVTFDEDVVVTGTPALQLETGTIDRKAIFTSGSGTNTLTFQYIVQDGDSSADLDQLSSSALALNGGTIQ-DAAG 3160          
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Match: UPI00191E7EEF (cadherin repeat domain-containing protein n=2 Tax=Aeromonas TaxID=642 RepID=UPI00191E7EEF)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-14
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQEV-HLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAG 294
            TT   +   SS    +YG G  I I V F+  V + G P L LETG  ++ + ++  + + TLTF Y V+ GD+S DLDYLSS AL LNGG + RD AG
Sbjct: 1884 TTAPVVSGVSSTAVGSYGVGAVISIQVSFSETVTVTGTPQLTLETGATDRTINYVSGSGSNTLTFNYTVQAGDTSADLDYLSSAALGLNGGTI-RDAAG 1981          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12977.2171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8H8_ECTSI1.330e-3369.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7Y6NU37_9GAMM1.040e-1648.35Tandem-95 repeat protein n=3 Tax=Pseudoalteromonas... [more]
UPI001117F1AC1.210e-1548.48cadherin repeat domain-containing protein n=1 Tax=... [more]
A0A7Z2Z6F4_AERHY1.230e-1548.48Cadherin repeat domain-containing protein n=2 Tax=... [more]
UPI0016805FDF1.250e-1547.25Ig-like domain-containing protein n=1 Tax=Pseudoal... [more]
A0A2E2BGQ9_9BACT1.600e-1543.30Por_Secre_tail domain-containing protein n=1 Tax=C... [more]
V9ZYD9_AERHY5.900e-1547.47Cadherin domain-containing protein n=2 Tax=Aeromon... [more]
A4CY53_SYNPV5.990e-1545.16Large exoprotein involved in heme utilization or a... [more]
A4CY56_SYNPV8.120e-1545.65VCBS protein n=1 Tax=Synechococcus sp. (strain WH7... [more]
UPI00191E7EEF1.100e-1445.45cadherin repeat domain-containing protein n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12977contigH-elongata_contig12977:650..1584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue7.1e-29
Seed eggNOG ortholog2880.D7G8H8
EggNOG OGs2CN6T@1,2QU8Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929771.0288935-CDS-H-elongata_contig12977:649..8021622929771.0288935-CDS-H-elongata_contig12977:649..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 650..802 +
1691679151.3619108-CDS-H-elongata_contig12977:649..8021691679151.3619108-CDS-H-elongata_contig12977:649..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 650..802 +
1622929771.0410142-CDS-H-elongata_contig12977:1407..15841622929771.0410142-CDS-H-elongata_contig12977:1407..1584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 1408..1584 +
1691679151.372939-CDS-H-elongata_contig12977:1407..15841691679151.372939-CDS-H-elongata_contig12977:1407..1584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12977 1408..1584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12977.2171.1prot_H-elongata_contig12977.2171.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12977 650..1584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12977.2171.1

>prot_H-elongata_contig12977.2171.1 ID=prot_H-elongata_contig12977.2171.1|Name=mRNA_H-elongata_contig12977.2171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
TTHVKIQVESSNEARAYGTGEAIMIDVIFNHNVVLDGEPTLVLETGVFNQ
EVHLKSANNRTLTFEYVVKEGDSSPDLDYLSSTALTLNGGMLERDNAGQT
ERTREMSNSL
back to top

mRNA from alignment at H-elongata_contig12977:650..1584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12977.2171.1 ID=mRNA_H-elongata_contig12977.2171.1|Name=mRNA_H-elongata_contig12977.2171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig12977:650..1584+ (Himanthalia elongata Himel1 dioecious)
ACCACACACGTCAAAATACAGGTAGAATCTTCCAACGAGGCACGAGCTTA CGGCACCGGGGAGGCAATCATGATCGACGTAATATTCAACCATAATGTTG TGCTAGACGGCGAGCCGACGCTCGTGCTGGAGACTGGCGTTTTCAACCAG GAGGTTAGCCCTTGTTGAGCCTGCGTATCTTCATATGATAGTGAAATGAA GACATCGTAGAACCATCCAAACACTCGTTCACTCAACATGTCGTTGGCCT TAAAGTCCGAGCCGTTTGGTAGGCTGCTCAAAAACACCGTCTTGAACCTG GGGCGAAAAGTGCATCATCAGCGGCAAGATCGTTGTGGCATAGCTGGTCA CGCCTTCTTGTTTTCGCGAGCATCGACCGTCCCGCCCACGACAATAGGCC ACACTTCTGTCCAATGTTCGCGTGATCCCTCTCGACCGAAGAGCTGCAAA CTTGCTCTGGCAATTTTCGAGGGCGATTTCGTATTTCCGTCCCTTATTAT TGGGGGGTATTTTTTATCCTGTATATACCGGTAGTTTTTTTTTGTCTGGA TCTCAGCGTTTGAAAGCCCTGTCTAGAATTATTTGGCTGTAAATCCACGC ATTTATGTCAGCCCTCCCTCCGAGAAAGTGCCAACCAATCACGATGCCTG GTGATCTCGTCGAACCTTACCATGCTCAATCTCCATCGTGTGCCACGACC AATCGATTCCGGCCCCGGTTACCGTCCGTGCTCGTGGTTCTGTTCTCATT GGCTGCAGGTGCACTTGAAGTCGGCAAACAACAGGACCCTAACGTTCGAG TACGTCGTAAAAGAGGGAGACTCGTCCCCTGACCTAGACTACCTCTCGTC GACGGCCCTCACTCTCAACGGAGGTATGTTGGAGCGTGATAACGCGGGCC AAACCGAGCGAACGCGTGAAATGTCAAATTCGCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12977:650..1584+

>mRNA_H-elongata_contig12977.2171.1 ID=mRNA_H-elongata_contig12977.2171.1|Name=mRNA_H-elongata_contig12977.2171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig12977:650..1584+ (Himanthalia elongata Himel1 dioecious)
ACCACACACGTCAAAATACAGGTAGAATCTTCCAACGAGGCACGAGCTTA
CGGCACCGGGGAGGCAATCATGATCGACGTAATATTCAACCATAATGTTG
TGCTAGACGGCGAGCCGACGCTCGTGCTGGAGACTGGCGTTTTCAACCAG
GAGACCACACACGTCAAAATACAGGTAGAATCTTCCAACGAGGCACGAGC
TTACGGCACCGGGGAGGCAATCATGATCGACGTAATATTCAACCATAATG
TTGTGCTAGACGGCGAGCCGACGCTCGTGCTGGAGACTGGCGTTTTCAAC
CAGGAGGTGCACTTGAAGTCGGCAAACAACAGGACCCTAACGTTCGAGTA
CGTCGTAAAAGAGGGAGACTCGTCCCCTGACCTAGACTACCTCTCGTCGA
CGGCCCTCACTCTCAACGGAGGTATGTTGGAGCGTGATAACGCGGGCCAA
ACCGAGCGAACGCGTGAAATGTCAAATTCGCTTGTGCACTTGAAGTCGGC
AAACAACAGGACCCTAACGTTCGAGTACGTCGTAAAAGAGGGAGACTCGT
CCCCTGACCTAGACTACCTCTCGTCGACGGCCCTCACTCTCAACGGAGGT
ATGTTGGAGCGTGATAACGCGGGCCAAACCGAGCGAACGCGTGAAATGTC
AAATTCGCTT
back to top