mRNA_H-elongata_contig12871.2115.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12871.2115.1
Unique NamemRNA_H-elongata_contig12871.2115.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.490e-24
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   42 LG*VPTFRLVATGAFHERGYGATRVHLFAFMFPVAVVALLVKETNGYFTFCTTTPAQTKDDKREDRHKEKEATKGRASWPEGGITLGMMYTVLGIMLALGLVRLPGIPGH*DLSDFHNFRLVRQSMERDIFLLIYNQYW 458
            +G +P F     G F     G      F+ MFP AV+ LLV++T  YF FC +T       ++E RH++K+A KG++SWP+ GIT  MM  V+GI+LA+GLV+LP +  H     FH+++LVR  + RD+ LLIY +++
Sbjct:  676 IGALPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTK---NPKEQEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFF 811          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.610e-23
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   51 VPTFRLVATGAFHERGYGATRVHLFAFMFPVAVVALLVKETNGYFTFCTTTPAQTKDDK-REDRHKEKEATKGRASWPEGGITLGMMYTVLGIMLALGLVRLPGIPGH*DLSDFHNFRLVRQSMERDIFLLIYNQYW 458
            +P F     G F     G      F+ MFP AV+ LLV++TN YF FC +T    K+ K +E RH++++A KG++SWP+ GIT  MM  V+ I+L +GLV+LP +  H     FH+++LVR  + RD+FLLIY +++
Sbjct:  473 LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRST----KNPKGQEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFF 605          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.340e-10
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  453 YWTTTKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVP 599
            YWT T+Q  RKKGEM  ARFGFL F QWKDSK+V+FLST+H+     +P
Sbjct:  578 YWTATRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLP 626          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI001FEF913B (piggyBac transposable element-derived protein 4-like n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEF913B)

HSP 1 Score: 65.9 bits (159), Expect = 1.510e-8
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  468 KQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQG--GEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*VG*----YKSVLWARR 821
            + +PR  G + + R G + F QW+D++ V   STIH   G+       K A G    ++  + P+   DY   MGGVDL+D L GYY +LH++K ++W  ++   D+ +      YK +  AR+
Sbjct:  264 RSSPR--GTICWIREGPIVFVQWRDTRDVLMCSTIHAAHGEDSVRRRIKGADGQWSVQDVSIPPAIN-DYNRNMGGVDLSDALIGYYNTLHKTKKWYWSFLYHFIDIAIVNAFILYKEIATARQ 384          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI0011B4094F (piggyBac transposable element-derived protein 4-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B4094F)

HSP 1 Score: 64.3 bits (155), Expect = 4.520e-8
Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 3
Query:  468 KQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIH--VKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRV 764
            K+    K E   A+   LTF  W+D+K V  LS  H   + G       ++   G  +  ++ P+C  DY+ YM GVDL DQ+ GYY   HRSK + WRRV
Sbjct:  310 KKASLNKHEYRVAQMDDLTFCIWQDTKTVMVLSNHHDPTETGTV-----NRRKDGANRVPVVVPACLADYQKYMKGVDLLDQMVGYYGFQHRSKKW-WRRV 404          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI001965236E (piggyBac transposable element-derived protein 4-like n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI001965236E)

HSP 1 Score: 63.9 bits (154), Expect = 7.210e-8
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  465 TKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*VG*YKSVLWAR 818
            TK+   KK +   A+   LTF  W+D+K V  LS  H      +     + + G  +  +  P+C  DY+ +M GVDL DQ+ GYYQ  HRS  + WRR++    + V  Y + + AR
Sbjct:  350 TKKAELKKHQFNVAQRDELTFCVWQDTKAVMVLSNYHDPTAHGL---VRRKSNGQRQTEVRVPACLADYQQHMKGVDLLDQMVGYYQIHHRSTKW-WRRLF-FYFITVACYNAFVAAR 462          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A3Q0QQV4_AMPCI (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Heroini TaxID=318529 RepID=A0A3Q0QQV4_AMPCI)

HSP 1 Score: 63.5 bits (153), Expect = 9.660e-8
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  486 KGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQG--GEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYF 752
            +G + + R   L F QW+D++ V F STIH   G        K  +G    K+  + P+ + DY  +MGGVDL+DQL GYY  LH++K ++
Sbjct:  356 RGSIRWLREDPLLFVQWRDTRDVFFCSTIHTAHGTETVKRKIKDKEGHWSSKDIPIPPAVK-DYNQHMGGVDLSDQLTGYYDVLHKTKKWY 445          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI00106EA48D (piggyBac transposable element-derived protein 4-like n=1 Tax=Perca flavescens TaxID=8167 RepID=UPI00106EA48D)

HSP 1 Score: 61.6 bits (148), Expect = 3.580e-7
Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 3
Query:  465 TKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*VG*YKSVLWAR 818
            TK+    K +   A+   LTF  W+D+K V  LS  H      +     + + G  +  +  P+C  DY+ +M GVDL DQ+ GYYQ  HRS  + WRR++    + V  Y + + AR
Sbjct:  208 TKKAELNKHQFNVAQQDDLTFCVWQDTKAVMVLSNYHDPTAHGL---VRRKSNGQRQTEVRVPACLADYQQHMKGVDLLDQMVGYYQIHHRSTKW-WRRLF-FYLITVACYNAFVAAR 320          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A8B6DPX8_MYTGA (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DPX8_MYTGA)

HSP 1 Score: 59.7 bits (143), Expect = 2.340e-6
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  483 KKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQGGEK--EALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*V 788
            K+GE+ F R   L   ++ D + V  LSTIH       P   S   +   +    +++P+C +DY +YMGGVDL+DQ+N YY  L ++  ++ +  + L +L V
Sbjct:  369 KRGEVIFRRKEGLLAVKFHDKRDVHMLSTIH-------PATVSVLNKNDRRTNNPIVKPTCVVDYCSYMGGVDLSDQINQYYSCLRKTSKWYKKLFFYLLNLCV 465          
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A8C5BAP3_GADMO (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BAP3_GADMO)

HSP 1 Score: 58.9 bits (141), Expect = 3.360e-6
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  465 TKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQ--GGEKEALLQ-PSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRV 764
            TK     K     A+   LTF  W+D+K V  LS  H       P  +    +  GG+++  ++ P+C  DY+ +M GVDL DQ+ GYYQ  HRS  + WRR+
Sbjct:  362 TKAAGLTKHAFNVAQRDDLTFCVWQDTKTVMVLSNFHD------PTEHGSVRRRVGGQRQTDVRAPACLADYQKHMKGVDLLDQMVGYYQIHHRSTKW-WRRL 457          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JFU5_9PHAE7.490e-2441.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3T1_9PHAE1.610e-2342.34DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JIB8_9PHAE4.340e-1063.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001FEF913B1.510e-833.06piggyBac transposable element-derived protein 4-li... [more]
UPI0011B4094F4.520e-838.61piggyBac transposable element-derived protein 4-li... [more]
UPI001965236E7.210e-834.75piggyBac transposable element-derived protein 4-li... [more]
A0A3Q0QQV4_AMPCI9.660e-838.46DDE_Tnp_1_7 domain-containing protein n=3 Tax=Hero... [more]
UPI00106EA48D3.580e-733.90piggyBac transposable element-derived protein 4-li... [more]
A0A8B6DPX8_MYTGA2.340e-633.65DDE_Tnp_1_7 domain-containing protein n=1 Tax=Myti... [more]
A0A8C5BAP3_GADMO3.360e-636.89DDE_Tnp_1_7 domain-containing protein n=1 Tax=Gadu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12871contigH-elongata_contig12871:2..1758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog144197.XP_008282296.1
EggNOG free text desc.piggyBac transposable element derived 4
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154,3BMU4@33208,3CZSB@33213,48F19@7711,49BW8@7742,4A8SE@7898
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size833
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12871.2115.1prot_H-elongata_contig12871.2115.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12871 65..705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.629782-UTR-H-elongata_contig12871:1..641622929765.629782-UTR-H-elongata_contig12871:1..64Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12871 2..64 -
1691679149.164989-UTR-H-elongata_contig12871:1..641691679149.164989-UTR-H-elongata_contig12871:1..64Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12871 2..64 -
1622929765.679145-UTR-H-elongata_contig12871:705..9511622929765.679145-UTR-H-elongata_contig12871:705..951Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12871 706..951 -
1691679149.2040584-UTR-H-elongata_contig12871:705..9511691679149.2040584-UTR-H-elongata_contig12871:705..951Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12871 706..951 -
1622929765.6940749-UTR-H-elongata_contig12871:1588..17581622929765.6940749-UTR-H-elongata_contig12871:1588..1758Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12871 1589..1758 -
1691679149.2163048-UTR-H-elongata_contig12871:1588..17581691679149.2163048-UTR-H-elongata_contig12871:1588..1758Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig12871 1589..1758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929765.6450665-CDS-H-elongata_contig12871:64..2241622929765.6450665-CDS-H-elongata_contig12871:64..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12871 65..224 -
1691679149.1770551-CDS-H-elongata_contig12871:64..2241691679149.1770551-CDS-H-elongata_contig12871:64..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12871 65..224 -
1622929765.661055-CDS-H-elongata_contig12871:511..7051622929765.661055-CDS-H-elongata_contig12871:511..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12871 512..705 -
1691679149.1933067-CDS-H-elongata_contig12871:511..7051691679149.1933067-CDS-H-elongata_contig12871:511..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12871 512..705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12871.2115.1

>prot_H-elongata_contig12871.2115.1 ID=prot_H-elongata_contig12871.2115.1|Name=mRNA_H-elongata_contig12871.2115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MERDIFLLIYNQYWTTTKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLS
TIHVKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNG
YYQSLHRSKNYFWRRVW*
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mRNA from alignment at H-elongata_contig12871:2..1758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12871.2115.1 ID=mRNA_H-elongata_contig12871.2115.1|Name=mRNA_H-elongata_contig12871.2115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1757bp|location=Sequence derived from alignment at H-elongata_contig12871:2..1758- (Himanthalia elongata Himel1 dioecious)
GACTGCCCAAAGTCGTTTCGGCCGTCGAAGTCGACCCTCGACTCGGATAA GTTCCCACGTTTCGACTCGTCGCAACTGGGGCGTTTCATGAGCGAGGATA TGGGGCAACTCGCGTTCACCTTTTCGCTTTCATGTTCCCCGTGGCAGTCG TCGCTCTTCTTGTGAAGGAGGTGAGAAACTGAACACGCACGTGTATAAAA CATGTGTATGGGTTAGCAGAAAGATGTACCCGTTTGTTGAGTAGCAATTA CGAAGGTGTAACAAACACGAGCATGCAAGATATATCTCAGGGCTATTTTC GAGGGAACAGAAAGTGCATTATCACCCCCCCCCTCCTATCCCCTTTTTGC GGTGAAATAATGTATGGTGATTTGAAATTCCCCGTACATTATGTTGAGCT AGTCGCGGGTACCCCAAACTCACCGAAATGGTTGGAAATATTTGAGCTAG TCCAGGGGGGATTATTTTTTCTTTTGAAAAAAACAACCCCTCGCCTTGCT TTGAGTTACCCGGGAGGAAGCAACCTCGCCCCCCTGCCCCCCCCCCCTTG TTATAATTTCCGTGCTTGATATGATAGCGCCTGCGGCAGGCATCTACCGA CCCTAAATCTGTTGAAATCGTACCAATAGCGCTCGGCAGCGCAACTGCGC TATGAAACAGGTCATTAAGTAGTAATCGCCGTCGTGATTGTTGTTGATAT TAATTTTCCACCGCAGGGTATGGTACGACCCTCCCCACGGGGTTGCTCGA GGAACTCAACCTCAGCAAGAAAAAACACCCCGTCCCACCCCCGGTCTCCC TACACAGACGAATGGTTACTTCACCTTTTGCACGACAACGCCAGCTCAAA CGAAGGATGACAAGCGTGAAGATAGGCACAAGGAAAAAGAGGCCACGAAA GGCAGGGCGTCGTGGCCCGAGGGTGGCATTACGCTAGGCATGATGTACAC CGTCCTTGGCATCATGTTGGCGCTGGGACTTGTGAGGCTTCCGGGAATCC CAGGCCACTGAGATTTGAGCGACTTCCACAACTTTAGGCTTGTCCGACAG AGTATGGAGCGAGATATATTTCTCCTCATCTACAACCAGTATTGGACCAC CACCAAGCAAACCCCGAGAAAGAAGGGGGAAATGGCTTTCGCGAGATTTG GGTTCTTGACCTTCAGGCAATGGAAGGACTCCAAGCTTGTCCGGTTCCTC TCCACCATCCATGTGAAGATAGGAGATTTTGTCCCACTTCCGTACAGGTG ATACCTGCGTACAGGCAATTTCTGGTCTCCTGTATTTCTTCAAGCCTGTA ATTTGCTTTCTTGGCCTTGGGTTTTCATACCCCTTCGGCTAGTATAAGCT CACTTCAACTGCCTTCAGGAGGAAGCGGCAGTTCTTTTTTTTTCAGTCGT TGCATAGCCAAATAACTCACATCATTCTGTTGTCGTTTTTTTACTCAGCC GTAGGTGTTACCTGTCCACAAAAACAAACACCCGGCCTACCCCCCTCTCT CGCCTCCCGCGATTTCCCCTTTTGTTTCTCGAAGTAAATTCGCGCAGGGG GGGGAGAAGGAGGCTCTACTGCAGCCGAGTTGTCGGCTTGATTACAAAAC CTACATGGGTGGTGTTGACCTAGCCGACCAACTCAACGGCTACTACCAAT CCCTCCACAGGTCCAAGAACTATTTTTGGCGGCGTGTTTGGTAATTACGA GATTTGTGAGTGGGTTAGTATAAATCAGTCCTTTGGGCAAGAAGATAACG AAGTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig12871:2..1758-

>mRNA_H-elongata_contig12871.2115.1 ID=mRNA_H-elongata_contig12871.2115.1|Name=mRNA_H-elongata_contig12871.2115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig12871:2..1758- (Himanthalia elongata Himel1 dioecious)
ATGGAGCGAGATATATTTCTCCTCATCTACAACCAGTATTGGACCACCAC
CAAGCAAACCCCGAGAAAGAAGGGGGAAATGGCTTTCGCGAGATTTGGGT
TCTTGACCTTCAGGCAATGGAAGGACTCCAAGCTTGTCCGGTTCCTCTCC
ACCATCCATGTGAAGATAGGAGATTTTGTCCCACTTCCGTACAGATGGAG
CGAGATATATTTCTCCTCATCTACAACCAGTATTGGACCACCACCAAGCA
AACCCCGAGAAAGAAGGGGGAAATGGCTTTCGCGAGATTTGGGTTCTTGA
CCTTCAGGCAATGGAAGGACTCCAAGCTTGTCCGGTTCCTCTCCACCATC
CATGTGAAGATAGGAGATTTTGTCCCACTTCCGTACAGTAAATTCGCGCA
GGGGGGGGAGAAGGAGGCTCTACTGCAGCCGAGTTGTCGGCTTGATTACA
AAACCTACATGGGTGGTGTTGACCTAGCCGACCAACTCAACGGCTACTAC
CAATCCCTCCACAGGTCCAAGAACTATTTTTGGCGGCGTGTTTGGTAATA
AATTCGCGCAGGGGGGGGAGAAGGAGGCTCTACTGCAGCCGAGTTGTCGG
CTTGATTACAAAACCTACATGGGTGGTGTTGACCTAGCCGACCAACTCAA
CGGCTACTACCAATCCCTCCACAGGTCCAAGAACTATTTTTGGCGGCGTG
TTTGGTAA
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