mRNA_H-elongata_contig12871.2115.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 111 bits (277), Expect = 7.490e-24 Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 3
Query: 42 LG*VPTFRLVATGAFHERGYGATRVHLFAFMFPVAVVALLVKETNGYFTFCTTTPAQTKDDKREDRHKEKEATKGRASWPEGGITLGMMYTVLGIMLALGLVRLPGIPGH*DLSDFHNFRLVRQSMERDIFLLIYNQYW 458
+G +P F G F G F+ MFP AV+ LLV++T YF FC +T ++E RH++K+A KG++SWP+ GIT MM V+GI+LA+GLV+LP + H FH+++LVR + RD+ LLIY +++
Sbjct: 676 IGALPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTK---NPKEQEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFF 811
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.610e-23 Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 3
Query: 51 VPTFRLVATGAFHERGYGATRVHLFAFMFPVAVVALLVKETNGYFTFCTTTPAQTKDDK-REDRHKEKEATKGRASWPEGGITLGMMYTVLGIMLALGLVRLPGIPGH*DLSDFHNFRLVRQSMERDIFLLIYNQYW 458
+P F G F G F+ MFP AV+ LLV++TN YF FC +T K+ K +E RH++++A KG++SWP+ GIT MM V+ I+L +GLV+LP + H FH+++LVR + RD+FLLIY +++
Sbjct: 473 LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRST----KNPKGQEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFF 605
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 4.340e-10 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3
Query: 453 YWTTTKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVP 599
YWT T+Q RKKGEM ARFGFL F QWKDSK+V+FLST+H+ +P
Sbjct: 578 YWTATRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLP 626
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI001FEF913B (piggyBac transposable element-derived protein 4-like n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEF913B) HSP 1 Score: 65.9 bits (159), Expect = 1.510e-8 Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 3
Query: 468 KQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQG--GEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*VG*----YKSVLWARR 821
+ +PR G + + R G + F QW+D++ V STIH G+ K A G ++ + P+ DY MGGVDL+D L GYY +LH++K ++W ++ D+ + YK + AR+
Sbjct: 264 RSSPR--GTICWIREGPIVFVQWRDTRDVLMCSTIHAAHGEDSVRRRIKGADGQWSVQDVSIPPAIN-DYNRNMGGVDLSDALIGYYNTLHKTKKWYWSFLYHFIDIAIVNAFILYKEIATARQ 384
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI0011B4094F (piggyBac transposable element-derived protein 4-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B4094F) HSP 1 Score: 64.3 bits (155), Expect = 4.520e-8 Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 3
Query: 468 KQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIH--VKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRV 764
K+ K E A+ LTF W+D+K V LS H + G ++ G + ++ P+C DY+ YM GVDL DQ+ GYY HRSK + WRRV
Sbjct: 310 KKASLNKHEYRVAQMDDLTFCIWQDTKTVMVLSNHHDPTETGTV-----NRRKDGANRVPVVVPACLADYQKYMKGVDLLDQMVGYYGFQHRSKKW-WRRV 404
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI001965236E (piggyBac transposable element-derived protein 4-like n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI001965236E) HSP 1 Score: 63.9 bits (154), Expect = 7.210e-8 Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 3
Query: 465 TKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*VG*YKSVLWAR 818
TK+ KK + A+ LTF W+D+K V LS H + + + G + + P+C DY+ +M GVDL DQ+ GYYQ HRS + WRR++ + V Y + + AR
Sbjct: 350 TKKAELKKHQFNVAQRDELTFCVWQDTKAVMVLSNYHDPTAHGL---VRRKSNGQRQTEVRVPACLADYQQHMKGVDLLDQMVGYYQIHHRSTKW-WRRLF-FYFITVACYNAFVAAR 462
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A3Q0QQV4_AMPCI (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Heroini TaxID=318529 RepID=A0A3Q0QQV4_AMPCI) HSP 1 Score: 63.5 bits (153), Expect = 9.660e-8 Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query: 486 KGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQG--GEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYF 752
+G + + R L F QW+D++ V F STIH G K +G K+ + P+ + DY +MGGVDL+DQL GYY LH++K ++
Sbjct: 356 RGSIRWLREDPLLFVQWRDTRDVFFCSTIHTAHGTETVKRKIKDKEGHWSSKDIPIPPAVK-DYNQHMGGVDLSDQLTGYYDVLHKTKKWY 445
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: UPI00106EA48D (piggyBac transposable element-derived protein 4-like n=1 Tax=Perca flavescens TaxID=8167 RepID=UPI00106EA48D) HSP 1 Score: 61.6 bits (148), Expect = 3.580e-7 Identity = 40/118 (33.90%), Postives = 60/118 (50.85%), Query Frame = 3
Query: 465 TKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQGGEKEALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*VG*YKSVLWAR 818
TK+ K + A+ LTF W+D+K V LS H + + + G + + P+C DY+ +M GVDL DQ+ GYYQ HRS + WRR++ + V Y + + AR
Sbjct: 208 TKKAELNKHQFNVAQQDDLTFCVWQDTKAVMVLSNYHDPTAHGL---VRRKSNGQRQTEVRVPACLADYQQHMKGVDLLDQMVGYYQIHHRSTKW-WRRLF-FYLITVACYNAFVAAR 320
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A8B6DPX8_MYTGA (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DPX8_MYTGA) HSP 1 Score: 59.7 bits (143), Expect = 2.340e-6 Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = 3
Query: 483 KKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQGGEK--EALLQPSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRVW*LRDL*V 788
K+GE+ F R L ++ D + V LSTIH P S + + +++P+C +DY +YMGGVDL+DQ+N YY L ++ ++ + + L +L V
Sbjct: 369 KRGEVIFRRKEGLLAVKFHDKRDVHMLSTIH-------PATVSVLNKNDRRTNNPIVKPTCVVDYCSYMGGVDLSDQINQYYSCLRKTSKWYKKLFFYLLNLCV 465
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Match: A0A8C5BAP3_GADMO (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BAP3_GADMO) HSP 1 Score: 58.9 bits (141), Expect = 3.360e-6 Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 3
Query: 465 TKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSTIHVKIGDFVPLPYSKFAQ--GGEKEALLQ-PSCRLDYKTYMGGVDLADQLNGYYQSLHRSKNYFWRRV 764
TK K A+ LTF W+D+K V LS H P + + GG+++ ++ P+C DY+ +M GVDL DQ+ GYYQ HRS + WRR+
Sbjct: 362 TKAAGLTKHAFNVAQRDDLTFCVWQDTKTVMVLSNFHD------PTEHGSVRRRVGGQRQTDVRAPACLADYQKHMKGVDLLDQMVGYYQIHHRSTKW-WRRL 457 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12871.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12871.2115.1 >prot_H-elongata_contig12871.2115.1 ID=prot_H-elongata_contig12871.2115.1|Name=mRNA_H-elongata_contig12871.2115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp MERDIFLLIYNQYWTTTKQTPRKKGEMAFARFGFLTFRQWKDSKLVRFLSback to top mRNA from alignment at H-elongata_contig12871:2..1758- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12871.2115.1 ID=mRNA_H-elongata_contig12871.2115.1|Name=mRNA_H-elongata_contig12871.2115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1757bp|location=Sequence derived from alignment at H-elongata_contig12871:2..1758- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12871:2..1758- >mRNA_H-elongata_contig12871.2115.1 ID=mRNA_H-elongata_contig12871.2115.1|Name=mRNA_H-elongata_contig12871.2115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig12871:2..1758- (Himanthalia elongata Himel1 dioecious)back to top |