mRNA_H-elongata_contig12867.2109.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: D8LHV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHV2_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 2.080e-146 Identity = 236/402 (58.71%), Postives = 269/402 (66.92%), Query Frame = 3
Query: 639 GPLGNPRFPVRNEYLAGWALTQNHTSSLERLLSMGYIFPGLSRQPSKLPYDFAPSEETQGSGV---LWGEATKALMHRMDITHDRDQRRLAASSYWQRLQE---------NGGGISANAD-----GSVPPSWADVHALFENDAGFVRRERERSMDEAAAFMPD--GWRDDEMSRAWVASYRLSVFETRRQAQRFFSWAIPDEGALDCLLEPGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAH------TTARES---IGNGSPL-FGNAGAEE----EDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPSDGQWPRDCLQAFSGDDFFYVGEGEGGATRMPWRILGEEWQLERMVEIPRWPGFKDALWWYRRRGSAPLPTNR 1745
G L NPR PV NEYLAGWALTQ T+ L+R MGY G + +P EET+G LWGEATKALM R+DI HD DQRRLAAS YWQRLQ N G D G P+WADV ALFE+D GFVRRE ER ++EA MP GW D +SR WVASY+LSVFETRRQAQRFFSW IPDEGALDC+LEPG R++EVGSGLGYWA LLK RSGDD+R+RCFDP AP A TT ES + P N + E ++E D WFGE R PF+ ERGSF+RI + +GFR WSL +CWPSDGQWP CLQ F+G+DFFYVGEGEGGATRMPWR+L EEW+L R VEIP WPGF+DALWWY R+ L +R
Sbjct: 82 GRLDNPRRPVPNEYLAGWALTQYDTACLQRFQDMGYTDCG--------DQESSP-EETKGEKAGFRLWGEATKALMDRVDIVHDLDQRRLAASRYWQRLQSTPPKEAPASNTGNKGKFTDLDPSPGLAAPTWADVDALFESDNGFVRRESERYIEEAREGMPSEGGWSGDRVSRQWVASYQLSVFETRRQAQRFFSWGIPDEGALDCILEPGNRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARQRTEVSTTEDESGYSVEEAPPRSIENVPSPEPISMREEEVDDWFGEGREPFSPAERGSFDRIARE-DGFRKWSLLICWPSDGQWPAGCLQEFAGNDFFYVGEGEGGATRMPWRVLREEWELVRRVEIPTWPGFRDALWWYTRKEPGALSRDR 473
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.660e-11 Identity = 68/212 (32.08%), Postives = 98/212 (46.23%), Query Frame = 3
Query: 1164 FSWAIPDEGALDCLLEPGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDP---------HAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPSDGQWPRD-----CLQAFSGDDFFYVGEGEGGATRM-----PW-RILGEEWQLERM--------VEIPRWPGFKDALWWYRR 1715
F+WAIPDE AL + G +VEVGSGLGYWA LL+AR D I +D AP + T +S + + A + ++D + GE + + + G + + + D SLF+C+P D + + CL AF GD +VGE G + M PW R +E Q E V +P WP +D L ++R
Sbjct: 82 FAWAIPDERALRIIKHFGP-IVEVGSGLGYWAKLLRARGVD---INPYDKVAGTPDTASAAPDSSQTKGKSTSKDAKVKSAAEGDGKEDADEGGGGEAPSFWIKVNEGGPDVLEEPCN--EDRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKR 287
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: A0A6H5JT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT97_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 2.280e-11 Identity = 72/214 (33.64%), Postives = 99/214 (46.26%), Query Frame = 3
Query: 1164 FSWAIPDEGALDCLLEPGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDP---------HAPAAHTTARESIGNGSPLFGNA-GAEEEDDEADVWFGEERAPF-TRTERGSFERIIDDSEGFRDWSLFVCWPSDGQWPRD-----CLQAFSGDDFFYVGEGEGGATRM-----PW-RILGEEWQLERM--------VEIPRWPGFKDALWWYRR 1715
F+WAIPDE AL + G +VE+GSGLGYWA LL+AR D I +D AP + T +S + + A G +ED AD G+E F + G + + + R SLF+C+P D + + CL AF GD +VGE G + M PW R +E Q E V +P WP +D L ++R
Sbjct: 81 FAWAIPDERALRIIKHFGP-IVEIGSGLGYWAKLLRARGVD---INAYDKVAGTPDTASAAPDSSRTKGKSTSKDAKVKSAAEGVVKED--ADEGGGDETPSFWIKVNEGGPDVLEEPCNEGR--SLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKR 286
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: A0A1Q7Y9E7_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1Q7Y9E7_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 2.730e-10 Identity = 58/197 (29.44%), Postives = 88/197 (44.67%), Query Frame = 3
Query: 1137 ETRRQAQRFFSWAIPDEGALDCLLEP-GKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPSDG-QWPRDCLQAFSGDDFFYVGEGEGGATRMP--WRILGEEWQLERMVEIPRWPGFKDALWWYRR 1715
E R + R ++WAI D ++ + G R VE+G+G GYWA L + D I FD + P + + N F W+ P T+ GS E + + +LF+CWP+ + CLQA+ G+ F ++GE EGG T + +L +EWQ +I +W G D + Y R
Sbjct: 29 EARDKCCRKYAWAIADPASVAFVARYLGPRAVEIGAGTGYWAWQLWQQGID---IIAFDHNPP-------DKVPN--DFFAPRTERPSKTLVKTWY-----PVTQ---GSSEVLSEHPNR----TLFLCWPNYATDFAAQCLQAYQGNRFVFIGENEGGCTGNADFFDLLEKEWQQVDAHQILQWSGIHDTIVVYER 201
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: C1EA75_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EA75_MICCC) HSP 1 Score: 66.6 bits (161), Expect = 1.110e-7 Identity = 55/189 (29.10%), Postives = 82/189 (43.39%), Query Frame = 3
Query: 1158 RFFSWAIPDEGALDCLLEPGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPSDGQ-WPRDCLQAFSGDDFFYVGEGEGGATRMPW-RILGEEWQLERMVEIPRWPGFKDALWWYRRR 1718
R F++A P AL L + VEVG+GLGYWAL +++ G D P+ E G SP G E D+ A + A F + G D +++ +LF+C+P G ++ GD VGE +G + + R L E W L R V +P+W L ++R+
Sbjct: 473 RLFAFATPTRRALRALCDASVSWVEVGAGLGYWALAMESSFGMDVVALDKTPNT--------EGFGGDSP-----GGGEWDEGAMNEYHGRAASFVKVREGGPR----DLRRYKNRALFLCYPPPGDDLAARSIREHGGDVVAVVGEWDGNTGDVAFARELRESWNLARRVSLPQWGDTAHELTIWQRK 644
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: A0A448ZI63_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI63_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.240e-7 Identity = 60/224 (26.79%), Postives = 81/224 (36.16%), Query Frame = 3
Query: 1134 FETRRQAQRFFSWAIPDEGALDCLLEPGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPS-----------DGQWPRDCLQAFSGDDFFYVGEGEGGATRMP--W------------RILGEE----WQLERMVEIPRWPGFKDALW-WYRR 1715
FE R +F+WA+P E AL CL+E G L+E+G+G GYWA LL R D D H R SI + GS E+ R +L +CWP G + L+AF G +VGE G R W L +E ++L + V +P WP + L W R+
Sbjct: 290 FELRTCLCTYFAWAVPTENALQCLVELGVPLLEIGAGTGYWAWLLSKRGVDIAAYDLPDSQGGQKHRF-RHSI--------------------------------VKDGSIEQASSPEHKSR--ALLLCWPDIVGDSAHDDADRGDFGAKALRAFGGSTVVHVGELGPGVVRAAEGWGDPFPPGGSSSSAALQDELRAGFRLSKRVLLPNWPPYNSHLTVWVRK 478
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: A0A1Q7RIW6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium 13_1_20CM_50_12 TaxID=1805063 RepID=A0A1Q7RIW6_9CHLR) HSP 1 Score: 60.1 bits (144), Expect = 1.270e-6 Identity = 52/207 (25.12%), Postives = 88/207 (42.51%), Query Frame = 3
Query: 1107 WVASYRLSVFETRRQAQRFFSWAIPDEGALDCLLEP-GKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPS-DGQWPRDCLQAFSGDDFFYVGEGEGGATRMP--WRILGEEWQLERMVEIPRWPGFKDALWWYRR 1715
W + + E R + + +++AI D ++ + E G R +E+G+G GYWA L D I +D P D + +F + +A + ++G +I+ + D +LF+CWP G +CLQA+ G F ++GE GG T + +L ++WQ I +W D + Y R
Sbjct: 24 WDYHFIIQSSEARVRCCKMYAFAITDPASVSFVAEHLGTRAIEMGAGTGYWAWQLTQLGVD---ILAYDKFPP-------------------------DKLPNDYFSQIKA-WHPVQQGD-PKILTEHP---DRALFLCWPPYGGSLAHECLQAYQGHRFVFIGEDCGGCTGDDDFFALLDKDWQEIAEHPIQQWRYIHDVITVYER 197
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: A0A7J6PNT4_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PNT4_PEROL) HSP 1 Score: 60.8 bits (146), Expect = 6.240e-6 Identity = 54/201 (26.87%), Postives = 88/201 (43.78%), Query Frame = 3
Query: 1131 VFETRRQAQRFFSWAIPDEGALDCLLE--PGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPSDGQ-WPRDCLQAFSGDDFFYVGE--GEGGATRMPWRILGEEWQLERMVEIPRWPGFKDALWWYRRR 1718
V TR +++A P E ALD L + PG +VEVGSG GYWA LL+ R + D + P D +A+ + G R P T ++G+ ++ L +C+P + + + F GD F++GE G+ G+ M + LG+ +++ R +P WP + ++RR
Sbjct: 368 VDATRDYMCHIYAYATPTESALDLLSDFVPGG-VVEVGSGTGYWAKLLRDRR---VEVLALDKNPP-------------------------DHQANAYHGRCR-PHTEVKKGN-ATDLESLSPMEYPKLMLCYPPPQEHMAAEAIGNFKGDYVFHIGEWFGDTGSLAMQ-KALGQSFRMIRREPLPNWPSTSYEMTIWKRR 536
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: A0A7J6SCU9_PEROL (TRANSKETOLASE_1 domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SCU9_PEROL) HSP 1 Score: 59.3 bits (142), Expect = 9.840e-6 Identity = 51/190 (26.84%), Postives = 85/190 (44.74%), Query Frame = 3
Query: 1164 FSWAIPDEGALDCLLE--PGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIIDDSEGFRDWSLFVCWPSDGQ-WPRDCLQAFSGDDFFYVGE--GEGGATRMPWRILGEEWQLERMVEIPRWPGFKDALWWYRRR 1718
+++A P E ALD L + PG +VEVGSG GYWA LL+ R + D + P D +A+ + G R P T ++G+ ++ L +C+P + + + F GD F++GE G+ G+ M + LG+ +++ R +P WP + ++RR
Sbjct: 1 YAYATPTESALDLLSDFVPGG-VVEVGSGTGYWAKLLRDRR---VEVLALDKNPP-------------------------DHQANAYHGRCR-PHTEVKKGN-ATDLESLSPMEYPKLMLCYPPPQEHMAAEAIGNFKGDYVFHIGEWFGDTGSLAMQ-KALGQSFRMIRREPLPNWPSTSYEMTIWKRR 158
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Match: C5L776_PERM5 (Uncharacterized protein n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L776_PERM5) HSP 1 Score: 57.8 bits (138), Expect = 5.700e-5 Identity = 60/240 (25.00%), Postives = 102/240 (42.50%), Query Frame = 3
Query: 1023 VRRERERSMDEAAAFMPDGWRDDEMSRAWVASYRLSVFETRRQAQRFFSWAIPDEGALDCLLE--PGKRLVEVGSGLGYWALLLKARSGDDTRIRCFDPHAPAAHTTARESIGNGSPLFGNAGAEEEDDEADVWFGEERAPFTRTERGSFERIID-DSEGFRDWSLFVCWPSDGQ-WPRDCLQAFSGDDFFYVGE--GEGGATRMPWRILGEEWQLERMVEIPRWPGFKDALWWYRRRGS 1724
R E +++ + MP D WV S TR +++A P E AL+ L PG +VEVGSG GYWA LL+ R+ ++ D + P D +A+ + G R P T ++G+ + +E + L +C+P + + + F GD +++GE G+ G M + LG+ +++ R +P WP + ++RR +
Sbjct: 346 TRAEETQTLKQGDPLMPSKILSD-----WVDS-------TRDYMCHIYAYATPTESALELLSSFVPGG-VVEVGSGTGYWAKLLRDRN---VKVLALDKNPP-------------------------DHQANAYHGRCR-PHTEVKKGNAADLQSLSAEEYP--KLMLCYPPPQEHMAAEAIGNFKGDYVYHIGEWFGDTGTLAMQ-KALGQGFRMIRREPLPNWPSTSYEMTIWKRRSN 540 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12867.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12867.2109.1 >prot_H-elongata_contig12867.2109.1 ID=prot_H-elongata_contig12867.2109.1|Name=mRNA_H-elongata_contig12867.2109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp MGYIFPGLSRQPSKLPYDFAPSEETQGSGVLWGEATKALMHRMDITHDRDback to top mRNA from alignment at H-elongata_contig12867:3665..6443- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12867.2109.1 ID=mRNA_H-elongata_contig12867.2109.1|Name=mRNA_H-elongata_contig12867.2109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2779bp|location=Sequence derived from alignment at H-elongata_contig12867:3665..6443- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12867:3665..6443- >mRNA_H-elongata_contig12867.2109.1 ID=mRNA_H-elongata_contig12867.2109.1|Name=mRNA_H-elongata_contig12867.2109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig12867:3665..6443- (Himanthalia elongata Himel1 dioecious)back to top |