mRNA_H-elongata_contig128532.2101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig128532.2101.1
Unique NamemRNA_H-elongata_contig128532.2101.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.370e-63
Identity = 144/411 (35.04%), Postives = 213/411 (51.82%), Query Frame = 1
Query:   10 RQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*RR-----PAS---SHLWQEEK----PFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVT-IKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 1203
            R  D+  A++++D++E++++ LPE           L K +YGL  A   W       L   GF +  AD CVFR I  G VVV +V ++DD+      +R + Q  RDL +  P+ +L +  +Y GC   RD +AGTLK  Q  Y   +   FG         P     S   Q+E+    PFR               SL     Q      TRPDI+ A   +A++  +P+  HWR     L Y+ R  DLGIT+      G  +  ++DAD  +    RRSVSG  VM  GG ISWFSR QK    +++E+EYV+LA+++ E+ FLRQV  FM     +  I + EDN+GAI++A++  S+  ++H+D++HH +R+ +    + I +V S  QHAD LTK++    FE
Sbjct:   36 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIG-----------SLMWLATQ------TRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFE 428          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 6.460e-62
Identity = 144/411 (35.04%), Postives = 213/411 (51.82%), Query Frame = 1
Query:   10 RQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*RR-----PAS---SHLWQEEK----PFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVT-IKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 1203
            R  D+  A++++D++E++++ LPE           L K +YGL  A   W       L   GF +  AD CVFR I  G VVV +V ++DD+      +R + Q  RDL +  P+ +L +  +Y GC   RD +AGTLK  Q  Y   +   FG         P     S   Q+E+    PFR               SL     Q      TRPDI+ A   +A++  +P+  HWR     L Y+ R  DLGIT+      G  +  ++DAD  +    RRSVSG  VM  GG ISWFSR QK    +++E+EYV+LA+++ E+ FLRQV  FM     +  I + EDN+GAI++A++  S+  ++H+D++HH +R+ +    + I +V S  QHAD LTK++    FE
Sbjct:  210 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIG-----------SLMWLATQ------TRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFE 602          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 8.580e-61
Identity = 134/368 (36.41%), Postives = 194/368 (52.72%), Query Frame = 1
Query:  115 LKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*-----RRPASSHLWQEEKPFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 1200
            L K +YGL  A   W       L A GF++  AD CVFR +  G VV+++V ++DD+  A  TK   +Q  +DL    P+  L E  +Y GC+  RDR AG L   Q  Y   + ER G         P +  LW       +    + +  +P    +G           TRPDI+ A   +A++   P+  HWR A   L Y  R    GI++      G  L  + DAD  +    RRSVSG  VM AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLR+V  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:   17 LNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEDGEVVLILVVHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELQWYSGCYYERDREAGRLTISQETYTKELGERHGVEWGGGIPLPTTWRLW-------DSDVNEPSVEYPFRALIGSLLWVALL---TRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDF 373          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 3.920e-59
Identity = 143/411 (34.79%), Postives = 213/411 (51.82%), Query Frame = 1
Query:   10 RQLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*RR-----PAS---SHLWQEEK----PFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVT-IKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 1203
            R  D+  A++++D++E++++ LPE           L K +YGL  A   W       L   GF +  AD CVFR I  G VVV +V ++DD+      +R + Q  RDL +  P+ +L +  +Y GC   RD +AGTLK  Q  Y   +   FG         P     S   Q+E+    PFR               SL     Q      TRPDI+ A   +A++  +P+  HWR     L Y+ R  DLGIT+      G  +  ++DAD  +    RRSVSG  VM  GG ISWFSR QK    +++E+EYV+LA+++ E+ FLRQV  FM     +  I + EDN+GAI++A++  S+  ++H+D++HH +R+ +    + I +V S  QHA+ LTK++    FE
Sbjct:  731 RHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIG-----------SLMWLATQ------TRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFE 1123          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.810e-58
Identity = 131/399 (32.83%), Postives = 208/399 (52.13%), Query Frame = 1
Query:   19 DVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*RR---PASSHLWQEEKPFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVT-IKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 1203
            DV+ A++ +++EE++Y+ LP+           L K +YGL  A   W       L A GF++  AD CVFR I  G VV+++V ++DD+      +R ++    DL    P+ +L E  +Y GC   R++  G L   Q  +   +A  +G       P SS +        +  A +    FP  + +G           TRPDI+ A   +A++  +P+  HW  A   L Y  R    GI++      G  L  + DAD  +    RRSVSG  V   GGA+SWFSR QK    +++E+EYVAL ++V E+ FLRQ+  FM  ++ +  I + EDN+GAI++A++  S+  ++H+D++HH +R+ ++   + + +V S  Q AD LTKS+    FE
Sbjct:   63 DVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-----KLSDFDADEVATEFPFRELVGSLMWLAT---QTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFE 452          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 207 bits (527), Expect = 2.590e-58
Identity = 143/404 (35.40%), Postives = 216/404 (53.47%), Query Frame = 1
Query:   13 QLDVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*R-----RPA--SSHLWQEEKPFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 1203
            QLDVD A+L AD++E++Y+E PE  +    +   L K +YGL  AG  W K     L   GF+   +D C++     G    + + Y+DD++V   T+   ++  + + + F I +L    + LG  I  DR    L   Q  Y+ T+ ERF          P   S  L + + P  +Q   + ++R P    +G  C Q      TRPDI+FA   L++F +NP P HW  A + L+YL   RD GI+YGG+    T +  + DAD  T  + RRSVSG  +MM GG I + ++ Q   A +SSE+EY+AL+    E+ ++R +   +   I   I++ EDN+GAI +A +      T+H+DI+HH VRD +   V+ + YV + +Q ADILTKS+  K FE
Sbjct:  103 QLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTYICL-YVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKR-PYRSLIG--CLQYV-AQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.690e-58
Identity = 132/368 (35.87%), Postives = 195/368 (52.99%), Query Frame = 1
Query:  115 LKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERFGA*-----RRPASSHLWQEEKPFRNQTARKRTQRFPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 1200
            L   +YGL  A   W       L A GF +  AD CVFR +  G VV+++V ++DD+  A  TK   +Q  +DL    P+  L E  +Y GC+  RDR AG L   Q  Y   + ER+G         P +  LW       +  A + +   P    +G           TRPDI+ +   +A+++  P+  HW+ A   L Y  R    GI++      G  L  +++AD  +    RRSVSG  VM AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:   69 LNNSLYGLRQASREWYALLKKCLLALGFGQCMADSCVFRFVEEGEVVLLLVVHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLW-------DFDADEPSVEHPFRALVGSLLWIALL---TRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREF 425          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.980e-58
Identity = 135/396 (34.09%), Postives = 218/396 (55.05%), Query Frame = 1
Query:   19 DVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERF---GA*RRPASSHLWQEEKPFRNQTARKRTQR---FPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRID-VTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSV 1185
            DV  AY  A ++EE++++LP    D   +    ++ +YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV Y+DD+LVA + + D E+ +  L   FP  +L E  ++ GC I RD  AGTL+  Q  YI ++ ERF      R PA+        P  +   ++  +    +P  +++G           +RPD+SFA   +A+    P   HW    K L YL   RDLGITY  + G G  L+ ++DA     ++ RRSVSG A  + G  +S  S+ Q + + +S+E+EY+A  E V E  F+R V  F+       +IK+ EDN+GAI + ++  SS  T+H+D+++H +R       + +++V + +QHAD+LTK++
Sbjct:  849 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--------PGADLGPKREDEEGGEWPVREAIGSMMWVSTF---SRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 3.360e-58
Identity = 135/396 (34.09%), Postives = 218/396 (55.05%), Query Frame = 1
Query:   19 DVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERF---GA*RRPASSHLWQEEKPFRNQTARKRTQR---FPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRID-VTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSV 1185
            DV  AY  A ++EE++++LP    D   +    ++ +YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV Y+DD+LVA + + D E+ +  L   FP  +L E  ++ GC I RD  AGTL+  Q  YI ++ ERF      R PA+        P  +   ++  +    +P  +++G           +RPD+SFA   +A+    P   HW    K L YL   RDLGITY  + G G  L+ ++DA     ++ RRSVSG A  + G  +S  S+ Q + + +S+E+EY+A  E V E  F+R V  F+       +IK+ EDN+GAI + ++  SS  T+H+D+++H +R       + +++V + +QHAD+LTK++
Sbjct: 1228 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--------PGADLGPKREDEEGGEWPVREAIGSMMWVSTF---SRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 3.400e-58
Identity = 135/396 (34.09%), Postives = 218/396 (55.05%), Query Frame = 1
Query:   19 DVDMAYLEADVEEEIYVELPEAYRDSRKQFGLLKKEMYGLVHAGLLWSKQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVAYIDDLLVASATKRDEEQAVRDLCSCFPINDLEEATYYLGCHITRDRNAGTLKFGQHQYIHTVAERF---GA*RRPASSHLWQEEKPFRNQTARKRTQR---FPTEKSLGP*CGQRQ*PGPTRPDISFAAHQLAKFNDNPRPTHWREAPKALQYLWRPRDLGITYGGEPGGGTKLSAWIDADCVTCQNLRRSVSGRAVMMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRID-VTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSV 1185
            DV  AY  A ++EE++++LP    D   +    ++ +YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV Y+DD+LVA + + D E+ +  L   FP  +L E  ++ GC I RD  AGTL+  Q  YI ++ ERF      R PA+        P  +   ++  +    +P  +++G           +RPD+SFA   +A+    P   HW    K L YL   RDLGITY  + G G  L+ ++DA     ++ RRSVSG A  + G  +S  S+ Q + + +S+E+EY+A  E V E  F+R V  F+       +IK+ EDN+GAI + ++  SS  T+H+D+++H +R       + +++V + +QHAD+LTK++
Sbjct: 1248 DVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPAT--------PGADLGPKREDEEGGEWPVREAIGSMMWVSTF---SRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.370e-6335.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE6.460e-6235.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE8.580e-6136.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE3.920e-5934.79Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JFG2_9PHAE1.810e-5832.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL2.590e-5835.40Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5JRZ9_9PHAE2.690e-5835.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.980e-5834.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.360e-5834.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.400e-5834.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128532contigH-elongata_contig128532:655..1875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue6.8e-17
Seed eggNOG ortholog67593.Physo133508
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1203
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128532.2101.1prot_H-elongata_contig128532.2101.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig128532 655..1014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.1120627-CDS-H-elongata_contig128532:654..10141622929764.1120627-CDS-H-elongata_contig128532:654..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128532 655..1014 -
1691679148.5885768-CDS-H-elongata_contig128532:654..10141691679148.5885768-CDS-H-elongata_contig128532:654..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig128532 655..1014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929764.1263442-UTR-H-elongata_contig128532:1014..13031622929764.1263442-UTR-H-elongata_contig128532:1014..1303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128532 1015..1303 -
1691679148.6048198-UTR-H-elongata_contig128532:1014..13031691679148.6048198-UTR-H-elongata_contig128532:1014..1303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128532 1015..1303 -
1622929764.139825-UTR-H-elongata_contig128532:1321..18751622929764.139825-UTR-H-elongata_contig128532:1321..1875Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128532 1322..1875 -
1691679148.614055-UTR-H-elongata_contig128532:1321..18751691679148.614055-UTR-H-elongata_contig128532:1321..1875Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig128532 1322..1875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig128532.2101.1

>prot_H-elongata_contig128532.2101.1 ID=prot_H-elongata_contig128532.2101.1|Name=mRNA_H-elongata_contig128532.2101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRI
DVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYV
RSGKQHADILTKSVDVKTFE
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mRNA from alignment at H-elongata_contig128532:655..1875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig128532.2101.1 ID=mRNA_H-elongata_contig128532.2101.1|Name=mRNA_H-elongata_contig128532.2101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1221bp|location=Sequence derived from alignment at H-elongata_contig128532:655..1875- (Himanthalia elongata Himel1 dioecious)
TGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGATGT GGAGGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGA AGCAATTCGGCCTACTAAAGAAGGAAATGTACGGGCTCGTCCACGCTGGG CTGCTATGGTCAAAACAGTTCGGGATCGAGCTCGAGGCGAAGGGTTTCCA GAGATCGCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCACGGGATAG TGGTAGTCGTCATCGTGGCCTACATTGACGACCTGCTGGTTGCTAGTGCG ACGAAACGTGACGAGGAGCAAGCCGTGAGGGACCTGTGCTCCTGTTTCCC CATCAATGATTTGGAGGAGGCTACATATTACCTGGGATGTCACATCACGC GGGACCGGAACGCTGGGACACTGAAGTTCGGCCAGCATCAGTACATACAT ACTGTGGCGGAACGTTTTGGTGCGTGACGAAGACCAGCATCGTCCCATCT GTGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGC AGAGGTTGAATAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGTCCC TAATGTGGGCAGCGACAATGACCAGGCCCGACCAGGCCCGACATTTCCTT CGCTGCGCACCAACTGGCAAAATTCAACGACAACCCGAGACCGACACACT GGAGGGAAGCCCCAAAAGCGCTGCAATACTTATGGCGCCCTCGGGACCTC GGGATCACATACGGAGGGGAACCGGGGGGGGGGACCAAGTTATCAGCATG GATCGACGCAGACTGTGTCACCTGCCAGAACCTGCGTCGCTCAGTGTCGG GAAGGGCGGTGATGATGGCTGGTGGGGCCATTAGTTGGTTCTCACGAGTG CAAAAGGTAACGGCGACGGCGTCGTCCGAATCGGAATACGTCGCGCTGGC TGAAATGGTGAACGAGTTGCATTTCCTACGACAGGTCAAGGAGTTCATGA CCTCTCGAATCGACGTCACCATCAAGATACACGAGGACAACGAAGGTGCA ATCAAGATGGCGAAACACCGCTTCAGCAGTCGACTAACGAGGCACGTGGA CATCAAGCATCACATTGTCCGCGACGCGATCGATGGGTGGGTGGTTCACA TAGAATACGTTCGGTCCGGGAAACAGCACGCCGACATCCTCACGAAGTCC GTAGACGTCAAGACATTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig128532:655..1875-

>mRNA_H-elongata_contig128532.2101.1 ID=mRNA_H-elongata_contig128532.2101.1|Name=mRNA_H-elongata_contig128532.2101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig128532:655..1875- (Himanthalia elongata Himel1 dioecious)
ATGATGGCTGGTGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGGTAAC
GGCGACGGCGTCGTCCGAATCGGAATACGTCGCGCTGGCTGAAATGGTGA
ACGAGTTGCATTTCCTACGACAGGTCAAGGAGTTCATGACCTCTCGAATC
GACGTCACCATCAAGATACACGAGGACAACGAAGGTGCAATCAAGATGGC
GAAACACCGCTTCAGCAGTCGACTAACGAGGCACGTGGACATCAAGCATC
ACATTGTCCGCGACGCGATCGATGGGTGGGTGGTTCACATAGAATACGTT
CGGTCCGGGAAACAGCACGCCGACATCCTCACGAAGTCCGTAGACGTCAA
GACATTTGAGATGATGGCTGGTGGGGCCATTAGTTGGTTCTCACGAGTGC
AAAAGGTAACGGCGACGGCGTCGTCCGAATCGGAATACGTCGCGCTGGCT
GAAATGGTGAACGAGTTGCATTTCCTACGACAGGTCAAGGAGTTCATGAC
CTCTCGAATCGACGTCACCATCAAGATACACGAGGACAACGAAGGTGCAA
TCAAGATGGCGAAACACCGCTTCAGCAGTCGACTAACGAGGCACGTGGAC
ATCAAGCATCACATTGTCCGCGACGCGATCGATGGGTGGGTGGTTCACAT
AGAATACGTTCGGTCCGGGAAACAGCACGCCGACATCCTCACGAAGTCCG
TAGACGTCAAGACATTTGAG
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