mRNA_H-elongata_contig102365.206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig102365.206.1
Unique NamemRNA_H-elongata_contig102365.206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A6H5KIL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.080e-19
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            RI EL+QD+VSVLLLPLYFAVSGLKTDLTLLD+ATSWGIC +TI+AAC+G+
Sbjct:  161 RIVELVQDVVSVLLLPLYFAVSGLKTDLTLLDSATSWGICALTISAACLGK 211
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: D8LLK5_ECTSI (K+ homeostasis protein Kha1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.240e-18
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            RI EL+QD+VSVLLLPLYFAVSGLKTDLTLLD+AT WGIC +TI+AAC+G+
Sbjct:  306 RIVELVQDVVSVLLLPLYFAVSGLKTDLTLLDSATLWGICALTISAACLGK 356
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A426ZWW0_ENSVE (Na_H_Exchanger domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426ZWW0_ENSVE)

HSP 1 Score: 63.5 bits (153), Expect = 2.020e-10
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            R+ E I+D VSVLLLPLYFA SGLKT++  + +ATSWGI  + I  ACVG+
Sbjct:  318 RLTERIEDFVSVLLLPLYFASSGLKTNVASIKDATSWGILALVICTACVGK 368
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A444G2R7_ENSVE (Na_H_Exchanger domain-containing protein n=3 Tax=Musaceae TaxID=4637 RepID=A0A444G2R7_ENSVE)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            R+ E I+D VSVLLLPLYFA SGLKT++  + +ATSWGI  + I  ACVG+
Sbjct:  318 RLTERIEDFVSVLLLPLYFASSGLKTNVASIKDATSWGILALVICTACVGK 368
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A0L0RVN0_ALLM3 (Na_H_Exchanger domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RVN0_ALLM3)

HSP 1 Score: 62.0 bits (149), Expect = 7.130e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 IAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            + E ++D+V+++LLPLYFA+SGLKT L LLD AT+WG+ V+ +  AC G+
Sbjct:  514 LTEKVEDLVTIVLLPLYFALSGLKTRLGLLDTATTWGLLVLVLVTACAGK 563
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A0L0RUR2_ALLM3 (Na_H_Exchanger domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RUR2_ALLM3)

HSP 1 Score: 62.0 bits (149), Expect = 7.130e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    4 IAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            + E ++D+V+++LLPLYFA+SGLKT L LLD AT+WG+ V+ +  AC G+
Sbjct:  324 LTEKVEDLVTIVLLPLYFALSGLKTRLGLLDTATTWGLLVLVLVTACAGK 373
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: UPI001CC34388 (cation/H(+) antiporter 20-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC34388)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            R+ E I+D VS LLLPLYFA SGLKTD+T +  A +WG+ V+ IA AC G+
Sbjct:  311 RLIERIEDFVSGLLLPLYFASSGLKTDVTKMHGAEAWGLLVLVIATACAGK 361
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A1J3DKG9_NOCCA (Cation/H(+) antiporter 19 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DKG9_NOCCA)

HSP 1 Score: 57.8 bits (138), Expect = 1.680e-9
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 IAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            + E I+D+VS LLLPLYFA SGLKTD+T +  A SWG+ V+ I   C G+
Sbjct:   47 LTEKIEDLVSGLLLPLYFASSGLKTDVTTIKGAQSWGLLVLVILTTCFGK 96
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: UPI00053C4778 (cation/H(+) antiporter 20-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4778)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-9
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            R+ E I+D VSVLLLPLYFA SGLKTD+  +  A +WGI  + IA AC G+
Sbjct:  325 RLIERIEDFVSVLLLPLYFASSGLKTDVAKIRGAEAWGILALVIATACAGK 375
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BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Match: A0A4Y7L255_PAPSO (Na_H_Exchanger domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L255_PAPSO)

HSP 1 Score: 60.8 bits (146), Expect = 1.820e-9
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 RIAELIQDMVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGE 153
            R+ E I+D VS LLLPLYFA SGLKTD+T +  A SWG+  + IA AC G+
Sbjct:  310 RLIERIEDFVSGLLLPLYFASSGLKTDVTKIRGAASWGLLALVIAVACAGK 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102365.206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIL8_9PHAE8.080e-1982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK5_ECTSI5.240e-1880.39K+ homeostasis protein Kha1 n=1 Tax=Ectocarpus sil... [more]
A0A426ZWW0_ENSVE2.020e-1060.78Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A444G2R7_ENSVE2.040e-1060.78Na_H_Exchanger domain-containing protein n=3 Tax=M... [more]
A0A0L0RVN0_ALLM37.130e-1054.00Na_H_Exchanger domain-containing protein n=1 Tax=A... [more]
A0A0L0RUR2_ALLM37.130e-1054.00Na_H_Exchanger domain-containing protein n=1 Tax=A... [more]
UPI001CC343881.330e-958.82cation/H(+) antiporter 20-like n=1 Tax=Telopea spe... [more]
A0A1J3DKG9_NOCCA1.680e-956.00Cation/H(+) antiporter 19 (Fragment) n=1 Tax=Nocca... [more]
UPI00053C47781.820e-958.82cation/H(+) antiporter 20-like n=1 Tax=Tarenaya ha... [more]
A0A4Y7L255_PAPSO1.820e-958.82Na_H_Exchanger domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102365contigH-elongata_contig102365:1360..1518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog2880.D8LLK5
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size159
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.641049-CDS-H-elongata_contig102365:1359..14941622929561.641049-CDS-H-elongata_contig102365:1359..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102365 1360..1494 -
1691679071.048605-CDS-H-elongata_contig102365:1359..14941691679071.048605-CDS-H-elongata_contig102365:1359..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig102365 1360..1494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.6537724-UTR-H-elongata_contig102365:1494..15181622929561.6537724-UTR-H-elongata_contig102365:1494..1518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102365 1495..1518 -
1691679071.0630715-UTR-H-elongata_contig102365:1494..15181691679071.0630715-UTR-H-elongata_contig102365:1494..1518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig102365 1495..1518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102365.206.1prot_H-elongata_contig102365.206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig102365 1360..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig102365.206.1

>prot_H-elongata_contig102365.206.1 ID=prot_H-elongata_contig102365.206.1|Name=mRNA_H-elongata_contig102365.206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MVSVLLLPLYFAVSGLKTDLTLLDNATSWGICVITIAAACVGES*
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mRNA from alignment at H-elongata_contig102365:1360..1518-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102365.206.1 ID=mRNA_H-elongata_contig102365.206.1|Name=mRNA_H-elongata_contig102365.206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig102365:1360..1518- (Himanthalia elongata Himel1 dioecious)
CGCATCGCGGAGCTGATCCAGGACATGGTGTCCGTTCTTCTGTTGCCGCT
GTATTTCGCCGTCTCCGGTCTCAAGACGGACCTCACCCTCTTGGATAACG
CCACCTCCTGGGGCATCTGTGTCATCACGATCGCTGCCGCTTGCGTTGGT
GAGAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig102365:1360..1518-

>mRNA_H-elongata_contig102365.206.1 ID=mRNA_H-elongata_contig102365.206.1|Name=mRNA_H-elongata_contig102365.206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig102365:1360..1518- (Himanthalia elongata Himel1 dioecious)
ATGGTGTCCGTTCTTCTGTTGCCGCTGTATTTCGCCGTCTCCGGTCTCAA
GACGGACCTCACCCTCTTGGATAACGCCACCTCCTGGGGCATCTGTGTCA
TCACGATCGCTGCCGCTTGCGTTGGTGAGAGCTAAATGGTGTCCGTTCTT
CTGTTGCCGCTGTATTTCGCCGTCTCCGGTCTCAAGACGGACCTCACCCT
CTTGGATAACGCCACCTCCTGGGGCATCTGTGTCATCACGATCGCTGCCG
CTTGCGTTGGTGAGAGCTAA
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