prot_H-elongata_contig127835.2050.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig127835.2050.1
Unique Name	prot_H-elongata_contig127835.2050.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	120

Homology

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A6H5K6B1_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B1_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 2.150e-49
Identity = 83/117 (70.94%), Postives = 96/117 (82.05%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            GVAHNKLLAKLCSNMHKPNAQTVLP D V  VF  LPV RV+GWGGKFGV+++E LGVSTAGEVA  G + LQR  G ++GWR W+KS  I  +PVK RSAPKS+GCSKTFPG++K+
Sbjct:   60 GVAHNKLLAKLCSNMHKPNAQTVLPLDKVEAVFHTLPVGRVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVKARSAPKSVGCSKTFPGKAKL 176

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: D7FT49_ECTSI (Translesion synthesis DNA polymerase eta splice variant n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT49_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 5.360e-49
Identity = 83/117 (70.94%), Postives = 96/117 (82.05%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            GVAHNKLLAKLCSNMHKPNAQTVLP D V  VF  LPVERV+GWGGKFGV+++E LGVSTAGEVA  G + LQR  G ++GWR W+KS  I  +PV  RSAPKS+GCSKTFPG++K+
Sbjct:  320 GVAHNKLLAKLCSNMHKPNAQTVLPLDKVEVVFHTLPVERVRGWGGKFGVKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVNARSAPKSVGCSKTFPGKTKL 436

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A3B3ZQX4_9GOBI (Polymerase (DNA directed), eta n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZQX4_9GOBI)

HSP 1 Score: 127 bits (319), Expect = 9.850e-32
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0

Query:    1 TGVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            +G+AHNK+LAKL   ++KPN QT+LP D VP++F +LP+ +++  GGK G  I ETLG+   GE+     + L + FG + G  ++   RGI+ EPVKPR  PKSIGCSK FPG++ +
Sbjct:  206 SGIAHNKVLAKLACGLNKPNRQTILPMDSVPELFSSLPISKIRNLGGKLGTSITETLGIENMGELTQFSQAQLGQHFGEKTGQWLYDLCRGIEFEPVKPRQLPKSIGCSKNFPGKTSL 323

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A3B3QCM7_9TELE (DNA polymerase eta n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QCM7_9TELE)

HSP 1 Score: 126 bits (316), Expect = 2.610e-31
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            G++HNK+LAKL    +KPN QT+LP   VP++F +LP+ +++  GGK G  IVE+L V   GE+     + L++ FG + G  ++  SRGID EPVKPR  PKSIGCSK FPG+S +
Sbjct:  218 GISHNKVLAKLACGFNKPNRQTILPSGSVPQLFSSLPISKIRNLGGKLGTSIVESLEVENMGEITKFTQAQLEQRFGEKTGQWLFDLSRGIDFEPVKPRQLPKSIGCSKNFPGKSAL 334

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A2I4AR82_9TELE (DNA polymerase eta n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4AR82_9TELE)

HSP 1 Score: 125 bits (315), Expect = 3.680e-31
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            G+AHNK+LAKL   ++KPN QT+LP D V ++F +LPV +++  GGK GV I ETLGV   G++     + L   FG + G  ++   RGI+ EPVKPR  PKSIGCSKTFPG++ +
Sbjct:  228 GIAHNKVLAKLACGLNKPNRQTILPLDSVAELFNSLPVSKIRNLGGKLGVSITETLGVENMGDLTRFSQAELGNHFGEKTGQWLYDLCRGIEFEPVKPRQLPKSIGCSKTFPGKTSL 344

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A3B4D598_PYGNA (DNA polymerase eta n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4D598_PYGNA)

HSP 1 Score: 125 bits (313), Expect = 6.610e-31
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            G++HNK+LAKL   ++KPN QT+LP   V ++FR LP+ +++  GGK GV I ETLGV   GE+ +   S L+  FG + G  ++   RGI+ EPVKPR  PKSIGCSK FPG++ +
Sbjct:  209 GISHNKVLAKLACGLNKPNRQTILPLGSVSELFRTLPISKIRNLGGKLGVSITETLGVENMGELTEFTRSQLEENFGEKTGQWLYDLCRGIEFEPVKPRQLPKSIGCSKNFPGKTAL 325

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A1A8NBR1_9TELE (Polymerase (DNA directed), eta (Fragment) n=2 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8NBR1_9TELE)

HSP 1 Score: 122 bits (307), Expect = 2.260e-30
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            G++HNK+LAKL   ++KPN QT+LP D V ++F +LPV +++  GGK GV I ETLGV   G++     + L + FG + G  ++   RGI+ EPVKPR  PKSIGCSK FPGR+ +
Sbjct:  245 GISHNKVLAKLACGLNKPNRQTILPLDSVGELFSSLPVSKIRNLGGKLGVSITETLGVENMGDLTRFSRAELGQHFGEKTGQWLFDLCRGIEFEPVKPRQLPKSIGCSKNFPGRTSL 361

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A1A7ZAD2_NOTFU (Polymerase (DNA directed), eta n=7 Tax=Nothobranchius TaxID=28779 RepID=A0A1A7ZAD2_NOTFU)

HSP 1 Score: 123 bits (308), Expect = 3.200e-30
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            G++HNK+LAKL   ++KPN QT+LP D V ++F +LPV +++  GGK GV I ETLGV   G++     + L + FG + G  ++   RGI+ EPVKPR  PKSIGCSK FPGR+ +
Sbjct:  225 GISHNKVLAKLACGLNKPNRQTILPLDSVGELFSSLPVSKIRNLGGKLGVSITETLGVENMGDLTRFSQAELGQHFGEKTGQWLFDLCRGIEFEPVKPRQLPKSIGCSKNFPGRTSL 341

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: UPI001CF9D4E1 (DNA polymerase eta n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9D4E1)

HSP 1 Score: 123 bits (308), Expect = 3.290e-30
Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRS 116
            G++HNK+LAKL   ++KPN QT+LP D VP++F  LP+  V+  GGK G  I ETLGV   G++     + LQ  FG + G  ++   RGI+ EPVKPR  PKSIGCSK FPGRS
Sbjct:  230 GISHNKVLAKLACGLNKPNRQTILPLDSVPQLFATLPISSVRNLGGKLGASISETLGVECMGQLTQFSETELQALFGEKTGPWLYALCRGIENEPVKPRQLPKSIGCSKHFPGRS 344

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BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Match: A0A667ZAQ0_9TELE (DNA polymerase eta n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZAQ0_9TELE)

HSP 1 Score: 123 bits (308), Expect = 3.370e-30
Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 0

Query:    2 GVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFGVRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPRSAPKSIGCSKTFPGRSKI 118
            G++HNK+LAKL   ++KPN QTV+P D VP++F +LP+ +++  GGK G  I ETL V   GE+     + L++ FG + G  ++   RGI+ EPVKPR  PKSIGCSK FPG++ +
Sbjct:  223 GISHNKVLAKLACGLNKPNRQTVVPLDSVPELFNSLPISKIRNLGGKLGASITETLHVENMGELTCYSQAQLEQHFGEKTGQWLYDLCRGIEFEPVKPRQLPKSIGCSKNFPGKTSL 339

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot

BLAST of mRNA_H-elongata_contig127835.2050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K6B1_9PHAE	2.150e-49	70.94	UmuC domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FT49_ECTSI	5.360e-49	70.94	Translesion synthesis DNA polymerase eta splice va...	[more]
A0A3B3ZQX4_9GOBI	9.850e-32	48.31	Polymerase (DNA directed), eta n=2 Tax=Periophthal...	[more]
A0A3B3QCM7_9TELE	2.610e-31	49.57	DNA polymerase eta n=1 Tax=Paramormyrops kingsleya...	[more]
A0A2I4AR82_9TELE	3.680e-31	50.43	DNA polymerase eta n=1 Tax=Austrofundulus limnaeus...	[more]
A0A3B4D598_PYGNA	6.610e-31	49.57	DNA polymerase eta n=2 Tax=Pygocentrus nattereri T...	[more]
A0A1A8NBR1_9TELE	2.260e-30	49.57	Polymerase (DNA directed), eta (Fragment) n=2 Tax=...	[more]
A0A1A7ZAD2_NOTFU	3.200e-30	49.57	Polymerase (DNA directed), eta n=7 Tax=Nothobranch...	[more]
UPI001CF9D4E1	3.290e-30	52.17	DNA polymerase eta n=1 Tax=Protopterus annectens T...	[more]
A0A667ZAQ0_9TELE	3.370e-30	47.86	DNA polymerase eta n=1 Tax=Myripristis murdjan Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036775	DNA polymerase, Y-family, little finger domain superfamily	GENE3D	3.30.1490.100		coord: 97..119 e-value: 4.5E-5 score: 25.7
None	No IPR available	GENE3D	1.10.150.20		coord: 39..96 e-value: 1.2E-11 score: 46.3
None	No IPR available	GENE3D	3.30.70.270		coord: 1..38 e-value: 4.7E-12 score: 48.2
None	No IPR available	PANTHER	PTHR45873	FAMILY NOT NAMED	coord: 2..119
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..101
IPR001126	UmuC domain	PROSITE	PS50173	UMUC	coord: 1..46 score: 12.678

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig127835	contig	H-elongata_contig127835:725..1532 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig127835.2050.1	mRNA_H-elongata_contig127835.2050.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig127835 725..1532 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig127835.2050.1 ID=prot_H-elongata_contig127835.2050.1|Name=mRNA_H-elongata_contig127835.2050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
TGVAHNKLLAKLCSNMHKPNAQTVLPGDLVPKVFRALPVERVKGWGGKFG
VRIVETLGVSTAGEVADRGPSALQRAFGAQDGWRVWQKSRGIDLEPVKPR
SAPKSIGCSKTFPGRSKIK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036775	DNA_pol_Y-fam_lit_finger_sf
IPR001126	UmuC