mRNA_H-elongata_contig12775.2044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12775.2044.1
Unique NamemRNA_H-elongata_contig12775.2044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.240e-43
Identity = 78/170 (45.88%), Postives = 105/170 (61.76%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDS-NGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
            QDGT+  +   AVA   DGSV LAGYT GDWN  N+G  D AV K+D N T+ W+WQ+GTE ++    V V  D  + +   + G++ G N G   F VVK+D  +G+E+WRWQNGT+  D + G     D S V+ G ++G+W  TNAG  DF A ++DA G+ MW WQ
Sbjct:  359 QDGTDADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEGETDFAVTKLDANGTLAWRWQDGTEDEEFGLMVVVGRDGGVYLAGYSTGAFGGINKGSEGFVVVKIDGRDGSELWRWQNGTSAADKLFGAAILDDDSVVVTGYSEGDWAETNAGGSDFCAARLDANGSEMWRWQ 528          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.590e-36
Identity = 75/174 (43.10%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAAADGS-VILAGYTWGDWNATNKGN-CDLAVAKVDL-NATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGT--NAGDKDFAAVKVDATGTMMWMWQ 507
            QDGT E +    V     GS V+LAG T GDW   N G   D A  K++  + + +W++Q+G+ G D  KSVA ++D ++++   T+GS  G N G +D AVVKLD++G  +WRWQ GT E+D       A DGS V+AG T G W G+  NAG+ D   VK+D  G  +W WQ
Sbjct:  147 QDGTEEDDVLMGVVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTEGSLGGDNAGETDCAVVKLDADGGVLWRWQGGTAESDVCSAAAVAEDGSIVVAGYTVGSWGGSEANAGEDDLVVVKLDKDGNELWHWQ 320          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.260e-35
Identity = 75/174 (43.10%), Postives = 104/174 (59.77%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAAADGS-VILAGYTWGDWNATNKGN-CDLAVAKVDL-NATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGT--NAGDKDFAAVKVDATGTMMWMWQ 507
            QDGT E +    +     GS V+LAG T GDW   N G   D A  K++  + + +W++Q+G+ G D  KSVA ++D ++++   TDGS  G N G +D  VVKLD++G  +WRWQ GT E+D       A DGS VLAG T G W+G+  NAG++D   VK+D  G  +W WQ
Sbjct:   94 QDGTEEDDVLVGLVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTDGSLGGVNAGETDCTVVKLDADGGVLWRWQGGTAESDVCSATVVAEDGSIVLAGYTVGSWDGSEANAGEEDLVVVKLDKDGNELWHWQ 267          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.390e-35
Identity = 74/172 (43.02%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDL-NATVLWKWQNGTEGQDE-AKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAI-DGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
            QDGT   E     +  ADG+V+L G T GDW  TN G   L   K+D+ + +V+W++Q G   Q   ++  A   D S+++G  TDG W G   G +DF  V LD +G+E+WR+Q+G+  +     G AA+ DGS VLAG+TDG + GTNAG +DFA VK+   G + W WQ
Sbjct:   74 QDGTEMDEGITTCSKTADGNVVLTGSTLGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSQSVVSRGSASRADGSIVIGGVTDGDWDGELTGFTDFFTVALDEDGSELWRFQDGSLLSSSSAWGVAALSDGSVVLAGTTDGNYAGTNAGAQDFAVVKLTEEGVLDWTWQ 245          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.880e-35
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLN-ATVLWKWQNGTEGQDEAKSVAVSD-DSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAI-DGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
            Q+GT + E  +  +  ADG+V+L G T GDW  TN G   L   K+D++  +V+W++Q G          A S  D S+++G  TDG W G   G +DF  V LD +G+E+WR+Q+G+  +     G AA+ DGS VLAG+TDG++ GTNAG +DFA VK+   G + W WQ
Sbjct:  128 QEGTEKDEVISTCSKTADGNVVLTGLTQGDWEETNTGLWALVAVKLDVSDGSVIWRYQAGVPSYSVVSRGAASRADGSIVIGGTTDGDWDGELTGYADFFSVALDEDGSELWRFQDGSLFSISSAWGVAALSDGSVVLAGTTDGDYAGTNAGAQDFAVVKLTEEGVLDWTWQ 299          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.200e-34
Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = 1
Query:    4 DGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAG---DKDFAAVKVDATGTMMWMWQ 507
            D  N      A+A    G V++ G  + D      G  D A  K+D +  V W+WQ  T+G +   S+A ++DS +L G +T G++ G++ GG+DF  VKLD +GTE+WRWQ+GT ++D V     + DGS VLAG T G W+  NA     KDFAAV + + G  +W WQ
Sbjct:   16 DDNNASRLAEAIAVDQQGGVLVGGLAFDD------GGTDFAACKLDSSGNVTWRWQATTDGLNAVSSIAPANDSFIL-GGRTTGNFNGTSAGGTDFVAVKLDDSGTEVWRWQDGTVQDDVVEAVAHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQ 179          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.620e-34
Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    4 DGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAG---DKDFAAVKVDATGTMMWMWQ 507
            D TN      A+A    G V++ G  + D         D A  K+D +  V W+WQ  T+G D   S+A ++  S ++G +T G + G++ GG+DF  VKLD +GTE+WRWQ+GT E+D+V     + DGS VLAG T G W+  NA     KDFAAV + + G  +W WQ
Sbjct:  142 DDTNASRLAEAIAVDQQGGVLVGGLAFDD------AGTDFAACKLDSSGNVTWRWQATTDGLDAVSSIAPAN-GSFVLGGRTTGDFNGTSAGGTDFVAVKLDDSGTEVWRWQDGTAEDDFVEAVVHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQ 305          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.850e-33
Identity = 71/177 (40.11%), Postives = 108/177 (61.02%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAA-ADGSVILAGYTWGDWN-ATNKGNCDLAVAKVDLNA-TVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRW-----QNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
            QDGT E +   A A    D SV++AG T+ +++ A+N G+ D+ V K++  + T +W++Q+GT   D+   +AV++D+ ++V   TDG W+G N G  DFA VKL S    I  +     Q+GT END++ G     DGS +L G+T G+W+G NAG++DF  V + A G  +W WQ
Sbjct:  151 QDGTEEEDLMTAAAMGDGDSSVVMAGQTYVNFSGASNSGSADIVVVKLNATSGTEIWRYQDGTSVYDKLGLIAVAEDNGIVVAGSTDGIWSGENAGLDDFAAVKLSSFSRLIIMYAHVLPQDGTAENDFLDGVAIQADGSVILGGNTVGDWDGANAGERDFIMVALSADGEELWRWQ 327          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 9.710e-33
Identity = 70/160 (43.75%), Postives = 98/160 (61.25%), Query Frame = 1
Query:   37 VAAAADGSVILAG-YTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDS-SLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGDK-DFAAVKVDATGTMMWMWQ 507
            VAA+  GSV+  G    G+W   + G  D    KVD +  +LWKWQ+GT G D   +V  +D+  S+++   T   ++G +VG  DF  +KLDS GT +W WQ+GT+ +D ++   A  DG  VLAG T GEW+G   G++ DFAAVK+DA GT +W WQ
Sbjct:  105 VAASDSGSVVAVGTINDGEWATPSVGGYDFIAYKVDGDGNLLWKWQDGTIGFDILWAVVSADEEGSVIMAGMTSLDFSGPSVGSLDFVAIKLDSGGTTLWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDANGTEVWRWQ 264          
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.730e-32
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 1
Query:    1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDL-NATVLWKWQNGTEGQDEAKSVAVSD-DSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAI-DGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
            QDGT + E     +  ADG+V+L G T GDW  TN G   L   K+D+ + +V+W++Q G          A S  D S+++G  TDG W G   G +DF  V L+ +G+E+WR+Q+G+  +     G AA+ DGS VLAG TDG++  TNAG++DFA VK+   G + W WQ
Sbjct:  131 QDGTEKDEVILTCSKTADGNVVLTGMTQGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSYSVVSRGAASRADGSIVIGGSTDGDWDGELTGYADFFSVALNEDGSELWRFQDGSEFSISSAWGVAALSDGSVVLAGVTDGDYAETNAGEQDFALVKLTEEGVLDWTWQ 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7A3_ECTSI1.240e-4345.88Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D7FXY5_ECTSI2.590e-3643.10von Willebrand factor type D domain protein n=1 Ta... [more]
A0A6H5JF09_9PHAE1.260e-3543.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIH4_ECTSI2.390e-3543.02Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D7FIH5_ECTSI6.880e-3542.44Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D7G371_ECTSI1.200e-3440.35Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5LJ25_9PHAE3.620e-3440.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY76_9PHAE2.850e-3340.11Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI9.710e-3343.75Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L7T2_9PHAE3.730e-3241.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12775contigH-elongata_contig12775:5708..7057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue2.7e-35
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12775.2044.1prot_H-elongata_contig12775.2044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12775 5708..7057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.6468713-CDS-H-elongata_contig12775:5707..58781622929757.6468713-CDS-H-elongata_contig12775:5707..5878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12775 5708..5878 +
1691679146.4566379-CDS-H-elongata_contig12775:5707..58781691679146.4566379-CDS-H-elongata_contig12775:5707..5878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12775 5708..5878 +
1622929757.6570332-CDS-H-elongata_contig12775:6286..64541622929757.6570332-CDS-H-elongata_contig12775:6286..6454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12775 6287..6454 +
1691679146.4702759-CDS-H-elongata_contig12775:6286..64541691679146.4702759-CDS-H-elongata_contig12775:6286..6454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12775 6287..6454 +
1622929757.6707737-CDS-H-elongata_contig12775:6886..70571622929757.6707737-CDS-H-elongata_contig12775:6886..7057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12775 6887..7057 +
1691679146.47953-CDS-H-elongata_contig12775:6886..70571691679146.47953-CDS-H-elongata_contig12775:6886..7057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12775 6887..7057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12775.2044.1

>prot_H-elongata_contig12775.2044.1 ID=prot_H-elongata_contig12775.2044.1|Name=mRNA_H-elongata_contig12775.2044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNA
TVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVV
KLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGD
KDFAAVKVDATGTMMWMWQV
back to top

mRNA from alignment at H-elongata_contig12775:5708..7057+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12775.2044.1 ID=mRNA_H-elongata_contig12775.2044.1|Name=mRNA_H-elongata_contig12775.2044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig12775:5708..7057+ (Himanthalia elongata Himel1 dioecious)
CAGGATGGGACGAATGAGCCGGAACGATGGAATGCAGTAGCAGCTGCTGC AGATGGGTCTGTTATATTGGCAGGGTACACATGGGGCGACTGGAATGCCA CAAATAAGGGCAATTGTGACCTTGCTGTGGCCAAGGTTGATCTCAACGCA ACAGTTCTTTGGAAATGGCAGGTGACGATAGACGTTGGTTTCTAATAATC CTACATTCTCCCCCCAACGGTGGGCTGTGTTCTGTGGCGTTGACTAGCTC AACCAACAAATGGGTCGTTTAATGTTAATAAGCTTCATGTACGTCGAAGA TATGCATGCTCAAACAATATGTAGACCAGAGATACAAATCCTTCAACATA ATAGTGTAACGTTTGATGTGCATTCTGACCTATTGAACATTCAAGATACC AACCTAATTCGGTCTTCGTTTTGGTCGCGCGCCTTTCCAATGAATGCGAT ACGTTTTTTAGTGACAAGCAATCGCAAGCGACTATTATTATGGATTGGTC CACATCGTGCAGTACTCTAGTCGCATGTGTATTGCCGCTTTTAAATGATT TCTCTTCCGTTTGAGTGAAATTTCAATAGAATGGAACAGAAGGACAAGAC GAGGCAAAATCTGTGGCGGTAAGCGATGACAGCTCCTTGTTAGTAGGCTT TCAAACTGATGGAAGTTGGACTGGCTCAAACGTTGGTGGTTCTGACTTTG CCGTGGTGAAGCTGGACTCCAATGGAACCGAAATATGGCGCTGGCAGGTG AACTAAGAAGGCTTGATATGTCAGGATATTTTACGCAGACGGTATGCTCG GTTGTTCCACGAGTCAGATCAGCACCTTGTTTGACCTTGGAATTTTGGAA CCTAGGAATGGTCGAATGTTAACTTAACACAAGATTGCATAAACATCCTC ACGACGTTAGGTTTTGTGATGGTCACCATACTGCTTAGTTAAATAGGTTT TATAGGCCACAATCCACAACGCGAGGGTAATAGCGCAGCTCTTGTTACTC GATGCCATAAATTATTTATGCTTTAGTTTTTCTTCAACAAACAAACGAGG CACTAGCTTTTCTATTGAGCACTACTCATCGTTTTTGGCTCGTCCTACTC GGCTCTTGTATATTATTTACTTGCTGATAAAAGTTAAGCATCTAACTACT CGGACATCGTATGTGCCTGCGCCACTCAGAATGGCACTACGGAGAATGAC TATGTACGTGGAGGTACAGCAGCCATCGATGGAAGTTTTGTCCTTGCGGG ATCTACCGACGGGGAATGGAATGGCACGAACGCTGGCGATAAGGACTTCG CAGCCGTCAAGGTCGATGCCACTGGTACCATGATGTGGATGTGGCAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig12775:5708..7057+

>mRNA_H-elongata_contig12775.2044.1 ID=mRNA_H-elongata_contig12775.2044.1|Name=mRNA_H-elongata_contig12775.2044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig12775:5708..7057+ (Himanthalia elongata Himel1 dioecious)
CAGGATGGGACGAATGAGCCGGAACGATGGAATGCAGTAGCAGCTGCTGC
AGATGGGTCTGTTATATTGGCAGGGTACACATGGGGCGACTGGAATGCCA
CAAATAAGGGCAATTGTGACCTTGCTGTGGCCAAGGTTGATCTCAACGCA
ACAGTTCTTTGGAAATGGCAGCAGGATGGGACGAATGAGCCGGAACGATG
GAATGCAGTAGCAGCTGCTGCAGATGGGTCTGTTATATTGGCAGGGTACA
CATGGGGCGACTGGAATGCCACAAATAAGGGCAATTGTGACCTTGCTGTG
GCCAAGGTTGATCTCAACGCAACAGTTCTTTGGAAATGGCAGAATGGAAC
AGAAGGACAAGACGAGGCAAAATCTGTGGCGGTAAGCGATGACAGCTCCT
TGTTAGTAGGCTTTCAAACTGATGGAAGTTGGACTGGCTCAAACGTTGGT
GGTTCTGACTTTGCCGTGGTGAAGCTGGACTCCAATGGAACCGAAATATG
GCGCTGGCAGAATGGAACAGAAGGACAAGACGAGGCAAAATCTGTGGCGG
TAAGCGATGACAGCTCCTTGTTAGTAGGCTTTCAAACTGATGGAAGTTGG
ACTGGCTCAAACGTTGGTGGTTCTGACTTTGCCGTGGTGAAGCTGGACTC
CAATGGAACCGAAATATGGCGCTGGCAGAATGGCACTACGGAGAATGACT
ATGTACGTGGAGGTACAGCAGCCATCGATGGAAGTTTTGTCCTTGCGGGA
TCTACCGACGGGGAATGGAATGGCACGAACGCTGGCGATAAGGACTTCGC
AGCCGTCAAGGTCGATGCCACTGGTACCATGATGTGGATGTGGCAGGTGA
ATGGCACTACGGAGAATGACTATGTACGTGGAGGTACAGCAGCCATCGAT
GGAAGTTTTGTCCTTGCGGGATCTACCGACGGGGAATGGAATGGCACGAA
CGCTGGCGATAAGGACTTCGCAGCCGTCAAGGTCGATGCCACTGGTACCA
TGATGTGGATGTGGCAGGTG
back to top