mRNA_H-elongata_contig12775.2044.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.240e-43 Identity = 78/170 (45.88%), Postives = 105/170 (61.76%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDS-NGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
QDGT+ + AVA DGSV LAGYT GDWN N+G D AV K+D N T+ W+WQ+GTE ++ V V D + + + G++ G N G F VVK+D +G+E+WRWQNGT+ D + G D S V+ G ++G+W TNAG DF A ++DA G+ MW WQ
Sbjct: 359 QDGTDADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEGETDFAVTKLDANGTLAWRWQDGTEDEEFGLMVVVGRDGGVYLAGYSTGAFGGINKGSEGFVVVKIDGRDGSELWRWQNGTSAADKLFGAAILDDDSVVVTGYSEGDWAETNAGGSDFCAARLDANGSEMWRWQ 528
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI) HSP 1 Score: 140 bits (354), Expect = 2.590e-36 Identity = 75/174 (43.10%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAAADGS-VILAGYTWGDWNATNKGN-CDLAVAKVDL-NATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGT--NAGDKDFAAVKVDATGTMMWMWQ 507
QDGT E + V GS V+LAG T GDW N G D A K++ + + +W++Q+G+ G D KSVA ++D ++++ T+GS G N G +D AVVKLD++G +WRWQ GT E+D A DGS V+AG T G W G+ NAG+ D VK+D G +W WQ
Sbjct: 147 QDGTEEDDVLMGVVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTEGSLGGDNAGETDCAVVKLDADGGVLWRWQGGTAESDVCSAAAVAEDGSIVVAGYTVGSWGGSEANAGEDDLVVVKLDKDGNELWHWQ 320
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.260e-35 Identity = 75/174 (43.10%), Postives = 104/174 (59.77%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAAADGS-VILAGYTWGDWNATNKGN-CDLAVAKVDL-NATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGT--NAGDKDFAAVKVDATGTMMWMWQ 507
QDGT E + + GS V+LAG T GDW N G D A K++ + + +W++Q+G+ G D KSVA ++D ++++ TDGS G N G +D VVKLD++G +WRWQ GT E+D A DGS VLAG T G W+G+ NAG++D VK+D G +W WQ
Sbjct: 94 QDGTEEDDVLVGLVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQDGSSGDDTLKSVAAAEDDTVVLAGYTDGSLGGVNAGETDCTVVKLDADGGVLWRWQGGTAESDVCSATVVAEDGSIVLAGYTVGSWDGSEANAGEEDLVVVKLDKDGNELWHWQ 267
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI) HSP 1 Score: 137 bits (346), Expect = 2.390e-35 Identity = 74/172 (43.02%), Postives = 103/172 (59.88%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDL-NATVLWKWQNGTEGQDE-AKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAI-DGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
QDGT E + ADG+V+L G T GDW TN G L K+D+ + +V+W++Q G Q ++ A D S+++G TDG W G G +DF V LD +G+E+WR+Q+G+ + G AA+ DGS VLAG+TDG + GTNAG +DFA VK+ G + W WQ
Sbjct: 74 QDGTEMDEGITTCSKTADGNVVLTGSTLGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSQSVVSRGSASRADGSIVIGGVTDGDWDGELTGFTDFFTVALDEDGSELWRFQDGSLLSSSSAWGVAALSDGSVVLAGTTDGNYAGTNAGAQDFAVVKLTEEGVLDWTWQ 245
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI) HSP 1 Score: 137 bits (344), Expect = 6.880e-35 Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLN-ATVLWKWQNGTEGQDEAKSVAVSD-DSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAI-DGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
Q+GT + E + + ADG+V+L G T GDW TN G L K+D++ +V+W++Q G A S D S+++G TDG W G G +DF V LD +G+E+WR+Q+G+ + G AA+ DGS VLAG+TDG++ GTNAG +DFA VK+ G + W WQ
Sbjct: 128 QEGTEKDEVISTCSKTADGNVVLTGLTQGDWEETNTGLWALVAVKLDVSDGSVIWRYQAGVPSYSVVSRGAASRADGSIVIGGTTDGDWDGELTGYADFFSVALDEDGSELWRFQDGSLFSISSAWGVAALSDGSVVLAGTTDGDYAGTNAGAQDFAVVKLTEEGVLDWTWQ 299
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI) HSP 1 Score: 133 bits (334), Expect = 1.200e-34 Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 4 DGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAG---DKDFAAVKVDATGTMMWMWQ 507
D N A+A G V++ G + D G D A K+D + V W+WQ T+G + S+A ++DS +L G +T G++ G++ GG+DF VKLD +GTE+WRWQ+GT ++D V + DGS VLAG T G W+ NA KDFAAV + + G +W WQ
Sbjct: 16 DDNNASRLAEAIAVDQQGGVLVGGLAFDD------GGTDFAACKLDSSGNVTWRWQATTDGLNAVSSIAPANDSFIL-GGRTTGNFNGTSAGGTDFVAVKLDDSGTEVWRWQDGTVQDDVVEAVAHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQ 179
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE) HSP 1 Score: 134 bits (337), Expect = 3.620e-34 Identity = 69/171 (40.35%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 4 DGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAG---DKDFAAVKVDATGTMMWMWQ 507
D TN A+A G V++ G + D D A K+D + V W+WQ T+G D S+A ++ S ++G +T G + G++ GG+DF VKLD +GTE+WRWQ+GT E+D+V + DGS VLAG T G W+ NA KDFAAV + + G +W WQ
Sbjct: 142 DDTNASRLAEAIAVDQQGGVLVGGLAFDD------AGTDFAACKLDSSGNVTWRWQATTDGLDAVSSIAPAN-GSFVLGGRTTGDFNGTSAGGTDFVAVKLDDSGTEVWRWQDGTAEDDFVEAVVHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQ 305
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE) HSP 1 Score: 134 bits (337), Expect = 2.850e-33 Identity = 71/177 (40.11%), Postives = 108/177 (61.02%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAA-ADGSVILAGYTWGDWN-ATNKGNCDLAVAKVDLNA-TVLWKWQNGTEGQDEAKSVAVSDDSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRW-----QNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
QDGT E + A A D SV++AG T+ +++ A+N G+ D+ V K++ + T +W++Q+GT D+ +AV++D+ ++V TDG W+G N G DFA VKL S I + Q+GT END++ G DGS +L G+T G+W+G NAG++DF V + A G +W WQ
Sbjct: 151 QDGTEEEDLMTAAAMGDGDSSVVMAGQTYVNFSGASNSGSADIVVVKLNATSGTEIWRYQDGTSVYDKLGLIAVAEDNGIVVAGSTDGIWSGENAGLDDFAAVKLSSFSRLIIMYAHVLPQDGTAENDFLDGVAIQADGSVILGGNTVGDWDGANAGERDFIMVALSADGEELWRWQ 327
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI) HSP 1 Score: 132 bits (333), Expect = 9.710e-33 Identity = 70/160 (43.75%), Postives = 98/160 (61.25%), Query Frame = 1
Query: 37 VAAAADGSVILAG-YTWGDWNATNKGNCDLAVAKVDLNATVLWKWQNGTEGQDEAKSVAVSDDS-SLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAIDGSFVLAGSTDGEWNGTNAGDK-DFAAVKVDATGTMMWMWQ 507
VAA+ GSV+ G G+W + G D KVD + +LWKWQ+GT G D +V +D+ S+++ T ++G +VG DF +KLDS GT +W WQ+GT+ +D ++ A DG VLAG T GEW+G G++ DFAAVK+DA GT +W WQ
Sbjct: 105 VAASDSGSVVAVGTINDGEWATPSVGGYDFIAYKVDGDGNLLWKWQDGTIGFDILWAVVSADEEGSVIMAGMTSLDFSGPSVGSLDFVAIKLDSGGTTLWTWQDGTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDANGTEVWRWQ 264
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE) HSP 1 Score: 130 bits (328), Expect = 3.730e-32 Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 1
Query: 1 QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDL-NATVLWKWQNGTEGQDEAKSVAVSD-DSSLLVGFQTDGSWTGSNVGGSDFAVVKLDSNGTEIWRWQNGTTENDYVRGGTAAI-DGSFVLAGSTDGEWNGTNAGDKDFAAVKVDATGTMMWMWQ 507
QDGT + E + ADG+V+L G T GDW TN G L K+D+ + +V+W++Q G A S D S+++G TDG W G G +DF V L+ +G+E+WR+Q+G+ + G AA+ DGS VLAG TDG++ TNAG++DFA VK+ G + W WQ
Sbjct: 131 QDGTEKDEVILTCSKTADGNVVLTGMTQGDWVETNTGLWALVAVKLDVTDGSVIWQYQAGVPSYSVVSRGAASRADGSIVIGGSTDGDWDGELTGYADFFSVALNEDGSELWRFQDGSEFSISSAWGVAALSDGSVVLAGVTDGDYAETNAGEQDFALVKLTEEGVLDWTWQ 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12775.2044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12775.2044.1 >prot_H-elongata_contig12775.2044.1 ID=prot_H-elongata_contig12775.2044.1|Name=mRNA_H-elongata_contig12775.2044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp QDGTNEPERWNAVAAAADGSVILAGYTWGDWNATNKGNCDLAVAKVDLNAback to top mRNA from alignment at H-elongata_contig12775:5708..7057+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12775.2044.1 ID=mRNA_H-elongata_contig12775.2044.1|Name=mRNA_H-elongata_contig12775.2044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-elongata_contig12775:5708..7057+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12775:5708..7057+ >mRNA_H-elongata_contig12775.2044.1 ID=mRNA_H-elongata_contig12775.2044.1|Name=mRNA_H-elongata_contig12775.2044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig12775:5708..7057+ (Himanthalia elongata Himel1 dioecious)back to top |