prot_H-elongata_contig127501.2035.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig127501.2035.1
Unique Nameprot_H-elongata_contig127501.2035.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: D7FRQ9_ECTSI (Dynein light intermediate chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 9.120e-41
Identity = 86/175 (49.14%), Postives = 96/175 (54.86%), Query Frame = 0
Query:    1 MLRDAMRRSRLPDGTLLLVGSQGCGKSTLLDTI-------SAANARG-----------------------------------------------------FHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCSELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            MLRDAMRRSRLP  TL+ VG +GCGKS+LLDT        S  N  G                                                     FHPVL+Y+YLDA DP+EQG+ERD+SPPRVSVW CS LEFE LL+TVLRPE+L N   VV VDLSRPWE MDSVEK
Sbjct:   34 MLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPIAGQAFHPVLSYAYLDAADPAEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEK 208          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A835Z2Q1_9STRA (Dynein light intermediate chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.200e-19
Identity = 54/139 (38.85%), Postives = 72/139 (51.80%), Query Frame = 0
Query:    1 MLRDAMRRSRLPDGTLLLVGSQGCGKSTLLDTISAANAR-----------GFHPVLAYSYLDATDPSEQ---GSERDDSPPRVSVWCCSELEFEGLLQTVLRPEQ-----------LANTTAVVTVDLSRPWEAMDSVE 114
            +LR+A    R PD  ++ VG +G GK+ L++ ++ A  R            FHPVLAY Y +A D + Q   GS   DSPPRVSVW CS+  F  +L  V    Q            A   A+V VDL+RPWEA+ + E
Sbjct:   19 LLREAATAERPPDSVIICVGPRGSGKTALVERLTGAAPRKQDATGEEPPPDFHPVLAYDYFEARDAAAQSSSGSAFSDSPPRVSVWSCSDARFVDILTAVTASTQHAPPPPAAAGVAAPALALVAVDLTRPWEAVPAAE 157          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A3Q2UA86_CHICK (Dynein light intermediate chain n=1 Tax=Gallus gallus TaxID=9031 RepID=A0A3Q2UA86_CHICK)

HSP 1 Score: 68.9 bits (167), Expect = 4.040e-12
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G T+L++G  G GK+TL+  +  A        L Y YL+  D      +RDD   R +VW    ++  +GLL+  +  E L +T  +  VD+SRPW AM+S+EK
Sbjct:   21 RSKLPSGKTILVLGDNGSGKTTLMAKLQGAEHGQKGRGLEYLYLNVHD-----EDRDDHT-RCNVWILDGDIYSKGLLKFAVSAESLQHTIVIFVVDMSRPWTAMESLEK 124          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: UPI000523A8E9 (cytoplasmic dynein 1 light intermediate chain 1 n=2 Tax=Neognathae TaxID=8825 RepID=UPI000523A8E9)

HSP 1 Score: 65.1 bits (157), Expect = 6.290e-10
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G  +LL+G  G GK++L+  I           L Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   12 RSKLPSGKNVLLLGEDGAGKTSLIGKIQGIEEYKKGRGLEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAVEASSLKDTLIMLVVDMSRPWTALDSLQK 115          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A7M4EAE4_CROPO (Dynein light intermediate chain n=22 Tax=Archelosauria TaxID=1329799 RepID=A0A7M4EAE4_CROPO)

HSP 1 Score: 65.1 bits (157), Expect = 6.320e-10
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G ++LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   45 RSKLPSGKSVLLLGEDGAGKTSLIGKIQGIEDYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLVMLVVDMSRPWTALDSLQK 148          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A7M4FTT0_CROPO (Dynein light intermediate chain n=9 Tax=Archosauria TaxID=8492 RepID=A0A7M4FTT0_CROPO)

HSP 1 Score: 65.1 bits (157), Expect = 6.360e-10
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G ++LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   45 RSKLPSGKSVLLLGEDGAGKTSLIGKIQGIEDYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLVMLVVDMSRPWTALDSLQK 148          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: H0YZW7_TAEGU (Dynein light intermediate chain n=98 Tax=Sauria TaxID=32561 RepID=H0YZW7_TAEGU)

HSP 1 Score: 65.1 bits (157), Expect = 6.400e-10
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G  +LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   68 RSKLPSGKNVLLLGEDGAGKTSLIGKIQGIEEYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLVMLVVDMSRPWTALDSLQK 171          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A8C8BJ14_9STRI (Dynein light intermediate chain n=1 Tax=Otus sunia TaxID=257818 RepID=A0A8C8BJ14_9STRI)

HSP 1 Score: 65.1 bits (157), Expect = 6.490e-10
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G ++LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:  135 RSKLPSGKSVLLLGEDGAGKTSLIGKIQGIEEYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAIEANSLKDTLIMLVVDMSRPWTALDSLQK 238          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A8C0FAQ0_BUBBB (Dynein light intermediate chain n=4 Tax=Neognathae TaxID=8825 RepID=A0A8C0FAQ0_BUBBB)

HSP 1 Score: 65.1 bits (157), Expect = 6.570e-10
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G ++LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:  209 RSKLPSGKSVLLLGEDGAGKTSLIGKIQGIEEYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAIEASSLKDTLIMLVVDMSRPWTALDSLQK 312          
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Match: A0A7L3XWC0_9AVES (Dynein light intermediate chain (Fragment) n=21 Tax=Aves TaxID=8782 RepID=A0A7L3XWC0_9AVES)

HSP 1 Score: 64.7 bits (156), Expect = 8.590e-10
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 0
Query:    8 RSRLPDG-TLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYLDATDPSEQGSERDDSPPRVSVWCCS-ELEFEGLLQTVLRPEQLANTTAVVTVDLSRPWEAMDSVEK 115
            RS+LP G  +LL+G  G GK++L+  I           + Y YL+  D      +RDD   R +VW    +L  +GLL+  +    L +T  ++ VD+SRPW A+DS++K
Sbjct:   12 RSKLPSGKNVLLLGEDGAGKTSLIGKIQGIEEYKKGRGMEYLYLNVHD-----EDRDDQT-RCNVWILDGDLYHKGLLKFAMEASSLKDTLIMLVVDMSRPWTALDSLQK 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127501.2035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ9_ECTSI9.120e-4149.14Dynein light intermediate chain n=2 Tax=Ectocarpus... [more]
A0A835Z2Q1_9STRA1.200e-1938.85Dynein light intermediate chain n=1 Tax=Tribonema ... [more]
A0A3Q2UA86_CHICK4.040e-1238.18Dynein light intermediate chain n=1 Tax=Gallus gal... [more]
UPI000523A8E96.290e-1036.36cytoplasmic dynein 1 light intermediate chain 1 n=... [more]
A0A7M4EAE4_CROPO6.320e-1035.45Dynein light intermediate chain n=22 Tax=Archelosa... [more]
A0A7M4FTT0_CROPO6.360e-1035.45Dynein light intermediate chain n=9 Tax=Archosauri... [more]
H0YZW7_TAEGU6.400e-1035.45Dynein light intermediate chain n=98 Tax=Sauria Ta... [more]
A0A8C8BJ14_9STRI6.490e-1035.45Dynein light intermediate chain n=1 Tax=Otus sunia... [more]
A0A8C0FAQ0_BUBBB6.570e-1035.45Dynein light intermediate chain n=4 Tax=Neognathae... [more]
A0A7L3XWC0_9AVES8.590e-1035.45Dynein light intermediate chain (Fragment) n=21 Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022780Dynein family light intermediate chainPFAMPF05783DLICcoord: 7..115
e-value: 5.4E-13
score: 48.6
IPR008467Dynein 1 light intermediate chainPANTHERPTHR12688DYNEIN LIGHT INTERMEDIATE CHAINcoord: 7..114
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..24
score: 6.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127501contigH-elongata_contig127501:280..804 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127501.2035.1mRNA_H-elongata_contig127501.2035.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig127501 280..822 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig127501.2035.1 ID=prot_H-elongata_contig127501.2035.1|Name=mRNA_H-elongata_contig127501.2035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MLRDAMRRSRLPDGTLLLVGSQGCGKSTLLDTISAANARGFHPVLAYSYL
DATDPSEQGSERDDSPPRVSVWCCSELEFEGLLQTVLRPEQLANTTAVVT
VDLSRPWEAMDSVEK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022780Dynein_light_int_chain
IPR008467Dynein1_light_intermed_chain
IPR027417P-loop_NTPase