mRNA_H-elongata_contig126111.1946.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.080e-39 Identity = 84/134 (62.69%), Postives = 90/134 (67.16%), Query Frame = 1
Query: 28 RQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGFGVAQV 429
RQ+A+QRKLGTVKGVF PCVQNI SMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGF++G H+ G+ QV
Sbjct: 99 RQQASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFSTGGGHNSDSGIPQV 232
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA) HSP 1 Score: 107 bits (266), Expect = 4.490e-24 Identity = 61/121 (50.41%), Postives = 69/121 (57.02%), Query Frame = 1
Query: 25 SRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFT 387
+R + KLGT+KGVFLPC QNI SM+AIATNG VQAGGPY+IISRNLGVE+GGAIGTLF L T+ +SLYVLGAVE I FT
Sbjct: 84 NRNHVRESKLGTMKGVFLPCFQNILGVIVFIRLPYITGQAGIWMTMLILFLSKLTTVLTTLSMSAIATNGTVQAGGPYFIISRNLGVELGGAIGTLFYLGTTIAASLYVLGAVEVISAAFT 204
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA) HSP 1 Score: 103 bits (256), Expect = 9.940e-23 Identity = 56/112 (50.00%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 49 KLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGF 384
KLGT+ GVFLPC+QNI S++AIATNG +QAGGPYY+ISRNLGVEIGGA+G LF L T+ SS+YVLGA+E I TGF
Sbjct: 144 KLGTLTGVFLPCLQNILGVILFIRLPFITSQAGCIQTTLIILMCVTSTFLTALSLSAIATNGTIQAGGPYYVISRNLGVEIGGALGLLFYLGTTIASSMYVLGAIEAIQTGF 255
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S1BPY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPY8_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.450e-22 Identity = 55/114 (48.25%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 43 QRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGF 384
+RKLGTV GVFLPC+QNI S++A+ TNG +QAGGPYYIISRNLGVEIGGA+G LF L T+ +S+YVLGAVE GF
Sbjct: 96 ERKLGTVNGVFLPCLQNILGVILFIRLPFITGQAGCFLASLMLVICFTATFTTSLSLSALVTNGSIQAGGPYYIISRNLGVEIGGALGALFYLGTTVAASMYVLGAVEAFQEGF 209
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.420e-20 Identity = 56/129 (43.41%), Postives = 72/129 (55.81%), Query Frame = 1
Query: 1 MPPENEHISRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFT 387
+PP I+ TQ KLGT KGVFLPC+QNI S++AIATNG+V+AGGPY++ISRNLG E+G A+G LF L T+ +S+YVLGAVE + GF+
Sbjct: 131 LPPTPVSITDSTDTQ-KLGTFKGVFLPCLQNILGIILYLRLTWITGQAGTFGTSGIVLICACSTFLTALSLSAIATNGRVEAGGPYFVISRNLGPEVGVAVGILFYLGTTIAASMYVLGAVEMLFEGFS 258
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: F0YC09_AURAN (AA_permease domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC09_AURAN) HSP 1 Score: 96.7 bits (239), Expect = 1.780e-20 Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = 1
Query: 37 ATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGFGVAQV 429
A + KLGT KGVFLPC+QNI S++A+ATNG+V+AGGPY++ISRNLG E+G A+G LF L T+ +S+YVLGAVE + GF +G+ S F + V
Sbjct: 152 AGEEKLGTFKGVFLPCLQNILGVILFLRLCWITGQAGALGATGIVLICATSTFLTALSLSAVATNGKVEAGGPYFVISRNLGPEVGTAVGLLFYLGTTIAASMYVLGAVEALYDGF-AGATRSADFPLRSV 281
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A183F697_HELPZ (AA_permease domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183F697_HELPZ) HSP 1 Score: 89.7 bits (221), Expect = 4.330e-20 Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 7 PENEHISRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIM 375
P +E + T K+GTV GVF PC+QNI S++AIATNG V GGPYY+ISRNLG E+GGA+G LF L T+ +S+Y+ GAVE +
Sbjct: 13 PTSEEADEKPKTATKMGTVMGVFFPCIQNIFGVLFFIRMTWIVGTAGIVQSFFVVLTCVSVTFLTAISLSAIATNGVVSGGGPYYMISRNLGPELGGAVGILFYLGTTIAASMYLTGAVEIFL 135
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A0R3PXV9_ANGCS (AA_permease domain-containing protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A0R3PXV9_ANGCS) HSP 1 Score: 89.7 bits (221), Expect = 2.250e-19 Identity = 51/136 (37.50%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 7 PENEHISRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGF 414
P +E + T K+GT+ GVF PC+QNI S++AIATNG V GGPYY+ISRNLG E+GGA+G LF L T+ +S+Y+ GAVE + S + GF
Sbjct: 49 PTSEEADEKPKTATKMGTIMGVFFPCIQNIFGVLFFIRMTWIVGTAGIVQAFFVVLTCVSVTFLTAISLSAIATNGVVSGGGPYYMISRNLGPELGGAVGILFYLGTTIAASMYLTGAVEIFLVSSYSVCDTANGF 184
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S2EJL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJL4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 3.850e-19 Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 31 QRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMT 378
+ + KLGT+ GVFLPC+Q I S++AIATNG + AGGPYY+ISR LGVEIGGA+G LF L +T+ +S+Y+LGAVE I +
Sbjct: 96 KNGAEGKLGTLNGVFLPCLQTIIGVILFLRLTSITAQAGVIMTTMIIIVCVISTLLTALSLSAIATNGTICAGGPYYVISRTLGVEIGGALGLLFYLGITIATSMYILGAVEAIQS 211
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S2LTH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LTH1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.360e-18 Identity = 50/114 (43.86%), Postives = 62/114 (54.39%), Query Frame = 1
Query: 31 QRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETI 372
Q + KL T GVFLPC+ I S++AIA+NG +QAGGPYYIISR LGVEIGGA+G LF L TLG+S++V+GAVET+
Sbjct: 55 QNRPEEKLDTYNGVFLPCLAQIVGVIFFLRLPTITGQAGTVHTTLIIFVCVLSTFVTSLSLSAIASNGTIQAGGPYYIISRTLGVEIGGALGILFYLGTTLGASMHVMGAVETM 168 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig126111.1946.1 >prot_H-elongata_contig126111.1946.1 ID=prot_H-elongata_contig126111.1946.1|Name=mRNA_H-elongata_contig126111.1946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MPPENEHISRQRATQRKLGTVKGVFLPCVQNILGVILFIRLPFIVGQAGVback to top mRNA from alignment at H-elongata_contig126111:461..1345+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig126111.1946.1 ID=mRNA_H-elongata_contig126111.1946.1|Name=mRNA_H-elongata_contig126111.1946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig126111:461..1345+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig126111:461..1345+ >mRNA_H-elongata_contig126111.1946.1 ID=mRNA_H-elongata_contig126111.1946.1|Name=mRNA_H-elongata_contig126111.1946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig126111:461..1345+ (Himanthalia elongata Himel1 dioecious)back to top |