mRNA_H-elongata_contig126111.1946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig126111.1946.1
Unique NamemRNA_H-elongata_contig126111.1946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.080e-39
Identity = 84/134 (62.69%), Postives = 90/134 (67.16%), Query Frame = 1
Query:   28 RQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGFGVAQV 429
            RQ+A+QRKLGTVKGVF PCVQNI                                     SMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGF++G  H+   G+ QV
Sbjct:   99 RQQASQRKLGTVKGVFQPCVQNILGVILFIRLPFIVGQAGVFLTIVIILVAKLATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFSTGGGHNSDSGIPQV 232          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.490e-24
Identity = 61/121 (50.41%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   25 SRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFT 387
            +R    + KLGT+KGVFLPC QNI                                     SM+AIATNG VQAGGPY+IISRNLGVE+GGAIGTLF L  T+ +SLYVLGAVE I   FT
Sbjct:   84 NRNHVRESKLGTMKGVFLPCFQNILGVIVFIRLPYITGQAGIWMTMLILFLSKLTTVLTTLSMSAIATNGTVQAGGPYFIISRNLGVELGGAIGTLFYLGTTIAASLYVLGAVEVISAAFT 204          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.940e-23
Identity = 56/112 (50.00%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   49 KLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGF 384
            KLGT+ GVFLPC+QNI                                     S++AIATNG +QAGGPYY+ISRNLGVEIGGA+G LF L  T+ SS+YVLGA+E I TGF
Sbjct:  144 KLGTLTGVFLPCLQNILGVILFIRLPFITSQAGCIQTTLIILMCVTSTFLTALSLSAIATNGTIQAGGPYYVISRNLGVEIGGALGLLFYLGTTIASSMYVLGAIEAIQTGF 255          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S1BPY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPY8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.450e-22
Identity = 55/114 (48.25%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   43 QRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGF 384
            +RKLGTV GVFLPC+QNI                                     S++A+ TNG +QAGGPYYIISRNLGVEIGGA+G LF L  T+ +S+YVLGAVE    GF
Sbjct:   96 ERKLGTVNGVFLPCLQNILGVILFIRLPFITGQAGCFLASLMLVICFTATFTTSLSLSALVTNGSIQAGGPYYIISRNLGVEIGGALGALFYLGTTVAASMYVLGAVEAFQEGF 209          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A8J2SMD4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMD4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.420e-20
Identity = 56/129 (43.41%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    1 MPPENEHISRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFT 387
            +PP    I+    TQ KLGT KGVFLPC+QNI                                     S++AIATNG+V+AGGPY++ISRNLG E+G A+G LF L  T+ +S+YVLGAVE +  GF+
Sbjct:  131 LPPTPVSITDSTDTQ-KLGTFKGVFLPCLQNILGIILYLRLTWITGQAGTFGTSGIVLICACSTFLTALSLSAIATNGRVEAGGPYFVISRNLGPEVGVAVGILFYLGTTIAASMYVLGAVEMLFEGFS 258          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: F0YC09_AURAN (AA_permease domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC09_AURAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.780e-20
Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   37 ATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGFGVAQV 429
            A + KLGT KGVFLPC+QNI                                     S++A+ATNG+V+AGGPY++ISRNLG E+G A+G LF L  T+ +S+YVLGAVE +  GF +G+  S  F +  V
Sbjct:  152 AGEEKLGTFKGVFLPCLQNILGVILFLRLCWITGQAGALGATGIVLICATSTFLTALSLSAVATNGKVEAGGPYFVISRNLGPEVGTAVGLLFYLGTTIAASMYVLGAVEALYDGF-AGATRSADFPLRSV 281          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A183F697_HELPZ (AA_permease domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183F697_HELPZ)

HSP 1 Score: 89.7 bits (221), Expect = 4.330e-20
Identity = 49/123 (39.84%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    7 PENEHISRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIM 375
            P +E    +  T  K+GTV GVF PC+QNI                                     S++AIATNG V  GGPYY+ISRNLG E+GGA+G LF L  T+ +S+Y+ GAVE  +
Sbjct:   13 PTSEEADEKPKTATKMGTVMGVFFPCIQNIFGVLFFIRMTWIVGTAGIVQSFFVVLTCVSVTFLTAISLSAIATNGVVSGGGPYYMISRNLGPELGGAVGILFYLGTTIAASMYLTGAVEIFL 135          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A0R3PXV9_ANGCS (AA_permease domain-containing protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A0R3PXV9_ANGCS)

HSP 1 Score: 89.7 bits (221), Expect = 2.250e-19
Identity = 51/136 (37.50%), Postives = 67/136 (49.26%), Query Frame = 1
Query:    7 PENEHISRQRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGF 414
            P +E    +  T  K+GT+ GVF PC+QNI                                     S++AIATNG V  GGPYY+ISRNLG E+GGA+G LF L  T+ +S+Y+ GAVE  +    S    + GF
Sbjct:   49 PTSEEADEKPKTATKMGTIMGVFFPCIQNIFGVLFFIRMTWIVGTAGIVQAFFVVLTCVSVTFLTAISLSAIATNGVVSGGGPYYMISRNLGPELGGAVGILFYLGTTIAASMYLTGAVEIFLVSSYSVCDTANGF 184          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S2EJL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJL4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.850e-19
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   31 QRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETIMT 378
            +   + KLGT+ GVFLPC+Q I                                     S++AIATNG + AGGPYY+ISR LGVEIGGA+G LF L +T+ +S+Y+LGAVE I +
Sbjct:   96 KNGAEGKLGTLNGVFLPCLQTIIGVILFLRLTSITAQAGVIMTTMIIIVCVISTLLTALSLSAIATNGTICAGGPYYVISRTLGVEIGGALGLLFYLGITIATSMYILGAVEAIQS 211          
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Match: A0A7S2LTH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LTH1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.360e-18
Identity = 50/114 (43.86%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   31 QRATQRKLGTVKGVFLPCVQNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMNAIATNGQVQAGGPYYIISRNLGVEIGGAIGTLFCLALTLGSSLYVLGAVETI 372
            Q   + KL T  GVFLPC+  I                                     S++AIA+NG +QAGGPYYIISR LGVEIGGA+G LF L  TLG+S++V+GAVET+
Sbjct:   55 QNRPEEKLDTYNGVFLPCLAQIVGVIFFLRLPTITGQAGTVHTTLIIFVCVLSTFVTSLSLSAIASNGTIQAGGPYYIISRTLGVEIGGALGILFYLGTTLGASMHVMGAVETM 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig126111.1946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z6_9PHAE1.080e-3962.69Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z2U9_9STRA4.490e-2450.41Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S2K263_9STRA9.940e-2350.00Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1BPY8_9STRA4.450e-2248.25Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A8J2SMD4_9STRA1.420e-2043.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YC09_AURAN1.780e-2041.98AA_permease domain-containing protein (Fragment) n... [more]
A0A183F697_HELPZ4.330e-2039.84AA_permease domain-containing protein n=1 Tax=Heli... [more]
A0A0R3PXV9_ANGCS2.250e-1937.50AA_permease domain-containing protein n=1 Tax=Angi... [more]
A0A7S2EJL4_9STRA3.850e-1942.24Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2LTH1_9STRA1.360e-1843.86Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig126111contigH-elongata_contig126111:461..1345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue9.9e-18
Seed eggNOG ortholog44056.XP_009037856.1
KEGG koko:K14427
KEGG TC2.A.30.5
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size444
Cds size444
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.1007931-CDS-H-elongata_contig126111:460..7481622929747.1007931-CDS-H-elongata_contig126111:460..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126111 461..748 +
1691679141.8654566-CDS-H-elongata_contig126111:460..7481691679141.8654566-CDS-H-elongata_contig126111:460..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126111 461..748 +
1622929747.1161995-CDS-H-elongata_contig126111:1189..13451622929747.1161995-CDS-H-elongata_contig126111:1189..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126111 1190..1345 +
1691679141.877875-CDS-H-elongata_contig126111:1189..13451691679141.877875-CDS-H-elongata_contig126111:1189..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig126111 1190..1345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig126111.1946.1prot_H-elongata_contig126111.1946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig126111 461..1345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig126111.1946.1

>prot_H-elongata_contig126111.1946.1 ID=prot_H-elongata_contig126111.1946.1|Name=mRNA_H-elongata_contig126111.1946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MPPENEHISRQRATQRKLGTVKGVFLPCVQNILGVILFIRLPFIVGQAGV
FLTILIIFIAKSATTLTTLSMNAIATNGQVQAGGPYYIISRNLGVEIGGA
IGTLFCLALTLGSSLYVLGAVETIMTGFTSGSAHSGGFGVAQVGHDL*
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mRNA from alignment at H-elongata_contig126111:461..1345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig126111.1946.1 ID=mRNA_H-elongata_contig126111.1946.1|Name=mRNA_H-elongata_contig126111.1946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig126111:461..1345+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCCCGAAAATGAACATATATCCAGGCAACGGGCTACTCAGCGCAA GCTTGGCACCGTGAAGGGTGTGTTTCTGCCGTGTGTGCAGAACATCCTTG GCGTCATCCTCTTCATCCGCCTCCCGTTCATCGTGGGACAGGCCGGGGTG TTCTTGACGATCTTGATCATCTTCATCGCCAAGTCGGCAACGACGCTGAC TACCCTCTCGATGAACGCGATTGCCACGAACGGGCAGGTGCAGGCGGGTG GGCCCTACTACATCATCTCCAGGAATCTCGGCGTAGAGGTGGGGGCCACT GGACACTAAGCAAGACACTTGGTTTCGACGTTTCTGTGGCGAACAAAGCT CTGTGTCGTCCGTGTCGCGTTTTCTCTGCTACTTAAAACACGACGAGGGG GTGCGAGGTGGTGCTCTAGTATTGTATGTGTCTACCACAAAGCGCGTGGT AGAGGTACTGAGGCACTTACGATGCTAAACTTAACGAGACATATCGGCTC GCTCGTGAAAGGTTTCCAGGTCCAACGCAGGTGTTTTCGGGAAGTTCAGG GGGTCATGAGGCTGAGGTGTCACTCCCCGCGGGAGAGCGATTGGCTCTTG CACCGTAAGAAATATCCTGAATGCGAAGCCGCCCTTCCCTCCTCGAGTCA TCGATCCGTGCGAAACGGCTCGTCCCTTCCCGATACCCCCCGCCTTTCCC CCTTTTCCAACCCGTCTCTGGTCTGGCAGATCGGCGGGGCTATCGGAACA TTGTTCTGCCTTGCTCTTACCCTGGGATCGTCTCTGTATGTCTTGGGAGC GGTGGAAACGATCATGACCGGTTTCACGAGCGGCAGCGCCCACAGCGGTG GTTTTGGGGTGGCGCAGGTGGGGCATGACCTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig126111:461..1345+

>mRNA_H-elongata_contig126111.1946.1 ID=mRNA_H-elongata_contig126111.1946.1|Name=mRNA_H-elongata_contig126111.1946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig126111:461..1345+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCCCGAAAATGAACATATATCCAGGCAACGGGCTACTCAGCGCAA
GCTTGGCACCGTGAAGGGTGTGTTTCTGCCGTGTGTGCAGAACATCCTTG
GCGTCATCCTCTTCATCCGCCTCCCGTTCATCGTGGGACAGGCCGGGGTG
TTCTTGACGATCTTGATCATCTTCATCGCCAAGTCGGCAACGACGCTGAC
TACCCTCTCGATGAACGCGATTGCCACGAACGGGCAGGTGCAGGCGGGTG
GGCCCTACTACATCATCTCCAGGAATCTCGGCGTAGAGATGCCGCCCGAA
AATGAACATATATCCAGGCAACGGGCTACTCAGCGCAAGCTTGGCACCGT
GAAGGGTGTGTTTCTGCCGTGTGTGCAGAACATCCTTGGCGTCATCCTCT
TCATCCGCCTCCCGTTCATCGTGGGACAGGCCGGGGTGTTCTTGACGATC
TTGATCATCTTCATCGCCAAGTCGGCAACGACGCTGACTACCCTCTCGAT
GAACGCGATTGCCACGAACGGGCAGGTGCAGGCGGGTGGGCCCTACTACA
TCATCTCCAGGAATCTCGGCGTAGAGATCGGCGGGGCTATCGGAACATTG
TTCTGCCTTGCTCTTACCCTGGGATCGTCTCTGTATGTCTTGGGAGCGGT
GGAAACGATCATGACCGGTTTCACGAGCGGCAGCGCCCACAGCGGTGGTT
TTGGGGTGGCGCAGGTGGGGCATGACCTATAAATCGGCGGGGCTATCGGA
ACATTGTTCTGCCTTGCTCTTACCCTGGGATCGTCTCTGTATGTCTTGGG
AGCGGTGGAAACGATCATGACCGGTTTCACGAGCGGCAGCGCCCACAGCG
GTGGTTTTGGGGTGGCGCAGGTGGGGCATGACCTATAA
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