mRNA_H-elongata_contig125390.1904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125390.1904.1
Unique NamemRNA_H-elongata_contig125390.1904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: D8LPN0_ECTSI (ABC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN0_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.080e-59
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            SRLLEILQP LGRTSF+AIASD+RTAMLDELDFRKEAKNIE FT FL R GI +AVAPKVYE LSS+RLLVMER KGV LTDLEGI+ YSS+PEATLITALNTWSMSVMMAESFHA
Sbjct:   22 SRLLEILQPELGRTSFAAIASDIRTAMLDELDFRKEAKNIEDFTGFLDRAGILDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 137          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A6H5KTF5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF5_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.200e-56
Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            SRLLEILQP LGRTSF+AIASD+RTAMLDELDFRKEAKNIE FT FL R GI +AVAPKVYE LSS+RLLVMER KGV LTDL+GI+ YSS+PEATLITALNTWSMSVMMAESFHA
Sbjct:  323 SRLLEILQPELGRTSFAAIASDIRTAMLDELDFRKEAKNIEDFTGFLGRAGILDAVAPKVYEDLSSKRLLVMERLKGVALTDLDGIKDYSSNPEATLITALNTWSMSVMMAESFHA 438          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A835YPW4_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW4_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.900e-44
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            SR++E+LQP L RTSFS I  D+R +MLDELDF KEA NI+ F  FL    +T+A AP+VY SLS+ R+L MER KGVPLTD+EGIR YS++PEATLI ALNTWS+SVMM  SFHA
Sbjct:  239 SRVVELLQPELARTSFSNIVGDIRASMLDELDFGKEADNIDEFLQFLSDADVTQATAPRVYRSLSTRRVLTMERLKGVPLTDIEGIRRYSANPEATLINALNTWSLSVMMCNSFHA 354          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A6T5M278_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5M278_HETAK)

HSP 1 Score: 144 bits (363), Expect = 1.150e-38
Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITE-AVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            SR+LE+L P LGR + + IA D+RT+MLDELDF KEA NI  F DFL R G+T  A AP+VY  LS  R+L MERF GVPLTDL+ IR YSS PE TLI ALNTW+ SV++ ++FHA
Sbjct:  200 SRVLELLSPELGRVALADIAGDIRTSMLDELDFTKEAANIAEFRDFLVREGLTGVAAAPRVYPELSGRRVLCMERFDGVPLTDLDNIRRYSSQPEKTLIDALNTWTASVLLCDTFHA 316          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A7S3GXX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXX8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.430e-36
Identity = 63/117 (53.85%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITE-AVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            +R+L  L P L R+S   +  ++R +ML ELDFR E +N+E+F +FL    +T  A AP+ ++ +SSE++LVMERF+GVPLTDL+GIRGYS++PEATLI+ALN W++SV   E FHA
Sbjct:    9 ARVLGFLSPALARSSLVDLVEEIRRSMLGELDFRLELQNLETFREFLVANDLTSIAAAPRPFKEVSSEQVLVMERFRGVPLTDLDGIRGYSANPEATLISALNVWALSVRNCEIFHA 125          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A4D9CYJ6_9STRA (ABC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYJ6_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.240e-35
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            SRL+E L P L RTS   I +D+R+++L+E+DF KE  N+E F  FL + G+T A  PKVY  LS+ ++L MER +GV L DLEGIR Y+ DPE  LITALNTWS+SV++  SFHA
Sbjct:  220 SRLIETLAPDLARTSLGDIVADIRSSILEEVDFSKEQANLEEFRMFLDQAGVTAATCPKVYPELSTRKVLTMERLRGVSLIDLEGIRAYTDDPEGALITALNTWSLSVVLCPSFHA 335          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A3M2RC77_9GAMM (Protein kinase domain-containing protein n=6 Tax=Marinobacter TaxID=2742 RepID=A0A3M2RC77_9GAMM)

HSP 1 Score: 132 bits (333), Expect = 1.150e-34
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            +R+LE L P L  TS S I  +++  M++E DF KEA N++ F +FL+ TG  EA  P+VYE  SS R+L MERF GVPLTDLE IRGY+ DPE TLITA+NTW  S+   E FHA
Sbjct:  155 ARILETLAPKLSWTSLSGIVDEIQKTMMEECDFIKEANNLKVFREFLESTGNEEATVPQVYEHCSSRRILTMERFYGVPLTDLESIRGYAKDPERTLITAMNTWFSSLTQCEFFHA 270          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: UPI0003B2F011 (AarF/UbiB family protein n=1 Tax=Perlucidibaca piscinae TaxID=392589 RepID=UPI0003B2F011)

HSP 1 Score: 132 bits (332), Expect = 1.920e-34
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query:    7 LLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            LLE   P L   S S I S+++  M++E+DF KEA+N+E F  FL++TG T+A AP++Y   SS R+L MERF GVPLTDLE IR Y+ DP  TL+TALNTW  S+MM ESFHA
Sbjct:  160 LLERSMPKLKFASLSGIVSEIQACMMEEVDFYKEARNVEQFRAFLEKTGNTQAAAPRIYPEASSLRVLTMERFHGVPLTDLETIRKYTRDPAGTLVTALNTWFSSLMMCESFHA 273          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A8J6CCQ0_DIALT (ABC1 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCQ0_DIALT)

HSP 1 Score: 132 bits (333), Expect = 4.070e-34
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITE-AVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            SR+LE + P LGR S + I SD+RT ML ELDFR+EAKN+  F  FL+  G+T+ +  P+ Y + S  R+L MER  GVPLTDL+GIR YS +PE TLI ALNTWS+SV+ +  FHA
Sbjct:  240 SRVLEFVAPSLGRLSLAGIVSDLRTTMLGELDFRQEAKNLGEFATFLRTAGLTDVSTCPRPYPAASGARVLTMERLYGVPLTDLDGIRAYSPNPEQTLINALNTWSLSVVASPFFHA 356          
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A3D4UCW2_9GAMM (Kinase n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A3D4UCW2_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 7.330e-34
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
            +R++E+  P +   S SAI S+++  M++E+DF KEA+NI  F  FL+RTG   A+APKVYE  SS R+L MERF GVPLTDL+ IR YS DP  TLI A+NTW  S+M  ESFHA
Sbjct:  159 ARIVEVAFPKIKFASLSAIVSEIQACMMEEVDFYKEARNIGEFNAFLERTGNQAAIAPKVYEHASSLRVLTMERFYGVPLTDLDTIRKYSKDPAGTLILAMNTWFASLMFCESFHA 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPN0_ECTSI1.080e-5986.21ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KTF5_9PHAE4.200e-5685.34Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YPW4_9STRA9.900e-4466.38ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A6T5M278_HETAK1.150e-3862.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GXX8_9STRA3.430e-3653.85Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CYJ6_9STRA1.240e-3556.03ABC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A3M2RC77_9GAMM1.150e-3456.03Protein kinase domain-containing protein n=6 Tax=M... [more]
UPI0003B2F0111.920e-3457.02AarF/UbiB family protein n=1 Tax=Perlucidibaca pis... [more]
A0A8J6CCQ0_DIALT4.070e-3456.41ABC1 domain-containing protein n=2 Tax=Diacronema ... [more]
A0A3D4UCW2_9GAMM7.330e-3456.03Kinase n=1 Tax=Moraxellaceae bacterium TaxID=18897... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125390contigH-elongata_contig125390:222..1784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue2.1e-47
Seed eggNOG ortholog2880.D8LPN0
KEGG koko:K08869
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010287,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125390.1904.1prot_H-elongata_contig125390.1904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125390 222..1784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.9118571-CDS-H-elongata_contig125390:221..2921622929740.9118571-CDS-H-elongata_contig125390:221..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125390 222..292 +
1691679139.7901468-CDS-H-elongata_contig125390:221..2921691679139.7901468-CDS-H-elongata_contig125390:221..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125390 222..292 +
1622929740.93532-CDS-H-elongata_contig125390:670..7761622929740.93532-CDS-H-elongata_contig125390:670..776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125390 671..776 +
1691679139.8144703-CDS-H-elongata_contig125390:670..7761691679139.8144703-CDS-H-elongata_contig125390:670..776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125390 671..776 +
1622929741.3727605-CDS-H-elongata_contig125390:1607..17841622929741.3727605-CDS-H-elongata_contig125390:1607..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125390 1608..1784 +
1691679139.8260937-CDS-H-elongata_contig125390:1607..17841691679139.8260937-CDS-H-elongata_contig125390:1607..1784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125390 1608..1784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125390.1904.1

>prot_H-elongata_contig125390.1904.1 ID=prot_H-elongata_contig125390.1904.1|Name=mRNA_H-elongata_contig125390.1904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRT
GITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITA
LNTWSMSVMMAESFHAV*
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mRNA from alignment at H-elongata_contig125390:222..1784+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125390.1904.1 ID=mRNA_H-elongata_contig125390.1904.1|Name=mRNA_H-elongata_contig125390.1904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1563bp|location=Sequence derived from alignment at H-elongata_contig125390:222..1784+ (Himanthalia elongata Himel1 dioecious)
TCTAGACTGTTGGAGATTTTGCAGCCAGGGCTAGGAAGGACATCCTTCTC GGCCATCGCGAGTGACGTCAGGTAAGGTGAGGTAAGGTGGCGTCAGAAAA GAACGGGGGACGAGACGGGGCGGGGTCGTGATTTGCGTGACCCATCGTTT TTCGCTCACGCCTTTCTCTTCCCCCGTATAGGAGATGCTTTGCGTACGCT GGACCGCGGGATGCATGTCTATCTCGTATTGTCCTCCTCCTCCTTCTCCT CCTCCTTTACAAGACGGTGTAGCGCAAGCCTTATGTGTCAGGGTATGGCC CGCTGTAGCACGTCCGCTGGTGCTATACAGTGCGTGTGAGTTGTGGGCAG TACGCAGCGGTAGAGGTATATACACCTGAAGAGCGTTTTTGGTAAATGAA ATGATGGATAGTGCAATTGCCTTTTTTAATGTCCCCCTCTCTCTTTCAGA ACGGCTATGCTGGACGAACTCGACTTCCGCAAGGAAGCCAAGAACATCGA AAGCTTTACCGATTTCTTGAAGAGGACAGGCATCACGGAAGCGGTCGCTC CGAAGGTTTTTTTCTATTTTTTTTTCTCGCGTGTCGCCTCTTGCGTCAAG TCACTAACGATGCGAACAATACAAGTACGCCGTTGTGGAGTTTTCTGCCA CACGTACAGCTGGAGATAGATAACTAGAGCTACAGCTGGAGATAGACTTG ACGTTCACCTCCGCCATGGCCGAGAAATAATTTAATATTGCCCATCGACA TACCCCGGGCACCGAATCCCAATCGTGAGCATCTCAAAATCTCAGGGCTA ATCATTTTCGCGCTCTTGGTGCTGCTAGTGCGTTCGTCTTTTCTTCCGAG AGGTTTCAGCCTGCGACTCGTGTGGCGATGGGGTTCTTATCTAAGCTATT TCGCCCGCTTTACTCGCCAACACCTGTTTTTTGTATTTCGCCGCACTTCG CACAAGCAGCCTACATCCCCCCCTCTCTCCCTACTCCACCGCATCCTCTA TCCCCTATTTCACACTCCTACTGAATCCCACCCAAATCCGTCTACTGAAA ACGTGCTCCCCCCTTCGTCTCGACGTTCGTGAAAACGATATATACTCGTT TTGACAAAGACTAACATTGTGTAGTGTAGTAATAACACGTCGCTAAAAAA TATCAAATGTGTTTTCGGCGGGGGGGTGGGGGGAGGGGGGGTACGTTTCC AGACTAAAATCGAGCTGTTCTATCGCCTCCGTAGGATTTCCGCTTTGAAC CGAACTATGTGTTGACGCCGAGTATGCTTAGATAGAGTAAATACCTAACC CGATGTATATATGCATGTATATAGCCCTATAGTGCTCGGCCGGGAGCGTA AACCTTAATCGGCCTATTTTGCTTCCTGTAATGAAGGTCTACGAAAGCCT GAGCTCGGAACGGCTGCTGGTGATGGAGCGGTTCAAGGGGGTGCCGCTGA CGGACCTGGAGGGCATTCGCGGCTACAGCAGCGACCCCGAGGCGACGCTC ATTACGGCCCTCAACACATGGAGCATGAGCGTCATGATGGCAGAATCCTT CCATGCGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig125390:222..1784+

>mRNA_H-elongata_contig125390.1904.1 ID=mRNA_H-elongata_contig125390.1904.1|Name=mRNA_H-elongata_contig125390.1904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig125390:222..1784+ (Himanthalia elongata Himel1 dioecious)
TCTAGACTGTTGGAGATTTTGCAGCCAGGGCTAGGAAGGACATCCTTCTC
GGCCATCGCGAGTGACGTCAGTCTAGACTGTTGGAGATTTTGCAGCCAGG
GCTAGGAAGGACATCCTTCTCGGCCATCGCGAGTGACGTCAGAACGGCTA
TGCTGGACGAACTCGACTTCCGCAAGGAAGCCAAGAACATCGAAAGCTTT
ACCGATTTCTTGAAGAGGACAGGCATCACGGAAGCGGTCGCTCCGAAGAA
CGGCTATGCTGGACGAACTCGACTTCCGCAAGGAAGCCAAGAACATCGAA
AGCTTTACCGATTTCTTGAAGAGGACAGGCATCACGGAAGCGGTCGCTCC
GAAGGTCTACGAAAGCCTGAGCTCGGAACGGCTGCTGGTGATGGAGCGGT
TCAAGGGGGTGCCGCTGACGGACCTGGAGGGCATTCGCGGCTACAGCAGC
GACCCCGAGGCGACGCTCATTACGGCCCTCAACACATGGAGCATGAGCGT
CATGATGGCAGAATCCTTCCATGCGGTGTGAGTCTACGAAAGCCTGAGCT
CGGAACGGCTGCTGGTGATGGAGCGGTTCAAGGGGGTGCCGCTGACGGAC
CTGGAGGGCATTCGCGGCTACAGCAGCGACCCCGAGGCGACGCTCATTAC
GGCCCTCAACACATGGAGCATGAGCGTCATGATGGCAGAATCCTTCCATG
CGGTGTGA
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