mRNA_H-elongata_contig125390.1904.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: D8LPN0_ECTSI (ABC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN0_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.080e-59 Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
SRLLEILQP LGRTSF+AIASD+RTAMLDELDFRKEAKNIE FT FL R GI +AVAPKVYE LSS+RLLVMER KGV LTDLEGI+ YSS+PEATLITALNTWSMSVMMAESFHA
Sbjct: 22 SRLLEILQPELGRTSFAAIASDIRTAMLDELDFRKEAKNIEDFTGFLDRAGILDAVAPKVYEDLSSKRLLVMERLKGVALTDLEGIKDYSSNPEATLITALNTWSMSVMMAESFHA 137
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A6H5KTF5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF5_9PHAE) HSP 1 Score: 192 bits (489), Expect = 4.200e-56 Identity = 99/116 (85.34%), Postives = 106/116 (91.38%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
SRLLEILQP LGRTSF+AIASD+RTAMLDELDFRKEAKNIE FT FL R GI +AVAPKVYE LSS+RLLVMER KGV LTDL+GI+ YSS+PEATLITALNTWSMSVMMAESFHA
Sbjct: 323 SRLLEILQPELGRTSFAAIASDIRTAMLDELDFRKEAKNIEDFTGFLGRAGILDAVAPKVYEDLSSKRLLVMERLKGVALTDLDGIKDYSSNPEATLITALNTWSMSVMMAESFHA 438
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A835YPW4_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW4_9STRA) HSP 1 Score: 158 bits (400), Expect = 9.900e-44 Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
SR++E+LQP L RTSFS I D+R +MLDELDF KEA NI+ F FL +T+A AP+VY SLS+ R+L MER KGVPLTD+EGIR YS++PEATLI ALNTWS+SVMM SFHA
Sbjct: 239 SRVVELLQPELARTSFSNIVGDIRASMLDELDFGKEADNIDEFLQFLSDADVTQATAPRVYRSLSTRRVLTMERLKGVPLTDIEGIRRYSANPEATLINALNTWSLSVMMCNSFHA 354
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A6T5M278_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5M278_HETAK) HSP 1 Score: 144 bits (363), Expect = 1.150e-38 Identity = 73/117 (62.39%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITE-AVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
SR+LE+L P LGR + + IA D+RT+MLDELDF KEA NI F DFL R G+T A AP+VY LS R+L MERF GVPLTDL+ IR YSS PE TLI ALNTW+ SV++ ++FHA
Sbjct: 200 SRVLELLSPELGRVALADIAGDIRTSMLDELDFTKEAANIAEFRDFLVREGLTGVAAAPRVYPELSGRRVLCMERFDGVPLTDLDNIRRYSSQPEKTLIDALNTWTASVLLCDTFHA 316
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A7S3GXX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXX8_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.430e-36 Identity = 63/117 (53.85%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITE-AVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
+R+L L P L R+S + ++R +ML ELDFR E +N+E+F +FL +T A AP+ ++ +SSE++LVMERF+GVPLTDL+GIRGYS++PEATLI+ALN W++SV E FHA
Sbjct: 9 ARVLGFLSPALARSSLVDLVEEIRRSMLGELDFRLELQNLETFREFLVANDLTSIAAAPRPFKEVSSEQVLVMERFRGVPLTDLDGIRGYSANPEATLISALNVWALSVRNCEIFHA 125
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A4D9CYJ6_9STRA (ABC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYJ6_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.240e-35 Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
SRL+E L P L RTS I +D+R+++L+E+DF KE N+E F FL + G+T A PKVY LS+ ++L MER +GV L DLEGIR Y+ DPE LITALNTWS+SV++ SFHA
Sbjct: 220 SRLIETLAPDLARTSLGDIVADIRSSILEEVDFSKEQANLEEFRMFLDQAGVTAATCPKVYPELSTRKVLTMERLRGVSLIDLEGIRAYTDDPEGALITALNTWSLSVVLCPSFHA 335
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A3M2RC77_9GAMM (Protein kinase domain-containing protein n=6 Tax=Marinobacter TaxID=2742 RepID=A0A3M2RC77_9GAMM) HSP 1 Score: 132 bits (333), Expect = 1.150e-34 Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
+R+LE L P L TS S I +++ M++E DF KEA N++ F +FL+ TG EA P+VYE SS R+L MERF GVPLTDLE IRGY+ DPE TLITA+NTW S+ E FHA
Sbjct: 155 ARILETLAPKLSWTSLSGIVDEIQKTMMEECDFIKEANNLKVFREFLESTGNEEATVPQVYEHCSSRRILTMERFYGVPLTDLESIRGYAKDPERTLITAMNTWFSSLTQCEFFHA 270
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: UPI0003B2F011 (AarF/UbiB family protein n=1 Tax=Perlucidibaca piscinae TaxID=392589 RepID=UPI0003B2F011) HSP 1 Score: 132 bits (332), Expect = 1.920e-34 Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1
Query: 7 LLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
LLE P L S S I S+++ M++E+DF KEA+N+E F FL++TG T+A AP++Y SS R+L MERF GVPLTDLE IR Y+ DP TL+TALNTW S+MM ESFHA
Sbjct: 160 LLERSMPKLKFASLSGIVSEIQACMMEEVDFYKEARNVEQFRAFLEKTGNTQAAAPRIYPEASSLRVLTMERFHGVPLTDLETIRKYTRDPAGTLVTALNTWFSSLMMCESFHA 273
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A8J6CCQ0_DIALT (ABC1 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCQ0_DIALT) HSP 1 Score: 132 bits (333), Expect = 4.070e-34 Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITE-AVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
SR+LE + P LGR S + I SD+RT ML ELDFR+EAKN+ F FL+ G+T+ + P+ Y + S R+L MER GVPLTDL+GIR YS +PE TLI ALNTWS+SV+ + FHA
Sbjct: 240 SRVLEFVAPSLGRLSLAGIVSDLRTTMLGELDFRQEAKNLGEFATFLRTAGLTDVSTCPRPYPAASGARVLTMERLYGVPLTDLDGIRAYSPNPEQTLINALNTWSLSVVASPFFHA 356
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Match: A0A3D4UCW2_9GAMM (Kinase n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A3D4UCW2_9GAMM) HSP 1 Score: 130 bits (328), Expect = 7.330e-34 Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTGITEAVAPKVYESLSSERLLVMERFKGVPLTDLEGIRGYSSDPEATLITALNTWSMSVMMAESFHA 348
+R++E+ P + S SAI S+++ M++E+DF KEA+NI F FL+RTG A+APKVYE SS R+L MERF GVPLTDL+ IR YS DP TLI A+NTW S+M ESFHA
Sbjct: 159 ARIVEVAFPKIKFASLSAIVSEIQACMMEEVDFYKEARNIGEFNAFLERTGNQAAIAPKVYEHASSLRVLTMERFYGVPLTDLDTIRKYSKDPAGTLILAMNTWFASLMFCESFHA 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125390.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig125390.1904.1 >prot_H-elongata_contig125390.1904.1 ID=prot_H-elongata_contig125390.1904.1|Name=mRNA_H-elongata_contig125390.1904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp SRLLEILQPGLGRTSFSAIASDVRTAMLDELDFRKEAKNIESFTDFLKRTback to top mRNA from alignment at H-elongata_contig125390:222..1784+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig125390.1904.1 ID=mRNA_H-elongata_contig125390.1904.1|Name=mRNA_H-elongata_contig125390.1904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1563bp|location=Sequence derived from alignment at H-elongata_contig125390:222..1784+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig125390:222..1784+ >mRNA_H-elongata_contig125390.1904.1 ID=mRNA_H-elongata_contig125390.1904.1|Name=mRNA_H-elongata_contig125390.1904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig125390:222..1784+ (Himanthalia elongata Himel1 dioecious)back to top |