mRNA_H-elongata_contig125374.1901.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: W7TSF6_9STRA (Ankyrin repeat family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSF6_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.770e-19 Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 1 NFSVIAGVCT-LH-AIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSG-GATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVGMEEVMARGEVR 447
+ + AG T LH A + +++ L+ G + D N QGL+P+I+AAA GCG V L + GAD G +LSG G T LH+ A+ G + V+A LAT A Q+++ P HLAA ++ +D+VE LLP+S + V EE+M+ G R
Sbjct: 184 DVNAAAGTGTPLHWASAEGAKASLEALIETGGDVDAVNDQGLSPIILAAAHGCGGCVALLAKGGADVGFILSGAGLTALHMMAEYGSLDGVQAILATGAPGVACAVQESENGKPIHLAAWAAHKDVVETLLPYSDVKETV--EELMSWGRAR 333
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: D8LBH9_ECTSI (Putative ankyrin protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH9_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.590e-17 Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1
Query: 259 AVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVGMEEVMARGE 441
AVEA LAT +GRKCAA D+QG +PAHLAAMSSR D+VE LLPHS LG DVG+E VMARG+
Sbjct: 177 AVEAILATAVGRKCAALADSQGRVPAHLAAMSSRTDLVETLLPHSGLGPDVGLEVVMARGK 237
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A7S0SRZ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRZ6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.430e-12 Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query: 91 NPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
+P+ + GL P+IMAA V L++A + G +LSG T+LHICA+ G++ AV + + G CA + G LP HLAAMS +I+E+L+P
Sbjct: 151 DPNELSGSGLPPVIMAAVAHSEECVCLLLEANVNVGFILSGNLTLLHICAENGMKNAVALIIKSIDGINCANLETIDGNLPIHLAAMSKYEEIIEILIP 249
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A836CAJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.230e-11 Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 205 LSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVG-----MEEVMARG 438
+SGG TVLHICAD+G AV+A LAT++GRKCAA ++ G+ P LAAM R +VE L P + + G +EE+MA G
Sbjct: 1 MSGGLTVLHICADLGSAAAVDALLATDVGRKCAALRNDAGMRPIDLAAMGRHRALVEKLHPVTTSNSGGGGSGETVEELMAAG 83
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A4D9AXI9_SALSN (Uncharacterized protein n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9AXI9_SALSN) HSP 1 Score: 58.9 bits (141), Expect = 3.060e-7 Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSA 396
AG + A + +V+ LL +NPD + +TPL+ A A G + + L++AGA +GGAT LHI AD+G E + L A D GL P +AA + VE+LLP +A
Sbjct: 154 AGTPLIWAAGHGQQDSVKLLLEHKANPDAMTEDDITPLLSAVAAGSLACLELLIKAGATVNFT-AGGATPLHIAADIGSPEIINCLLQAGADPN---AIDEDGLKPVQVAASRGNKVAVEILLPVTA 276
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: F0WIY4_9STRA (Uncharacterized protein AlNc14C115G6520 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIY4_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.190e-7 Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 1
Query: 31 LH-AIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLA--TEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
LH A+ + R T LL G+N + RN G+TPLI+ + V L++A D + G T LHI A+MG E V+A L+ E A A+ G P LAA + IVELL P
Sbjct: 165 LHMAVSEKREKTACFLLEKGANVNARNPDGVTPLILCCILNVPNIAVKLLEALCDITCTVMEGLTALHIAAEMGSEEIVQAILSIRAEEAIVVANARSKAGSTPLQLAAGAKHLKIVELLKP 286
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A5N5H7R3_9ROSA (Ankyrin-1 n=5 Tax=Maleae TaxID=721813 RepID=A0A5N5H7R3_9ROSA) HSP 1 Score: 56.6 bits (135), Expect = 1.930e-6 Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 1
Query: 16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
AG + A + V+ LL +NP+ N +TPL+ + A G + L+QAGA I +GGAT LHI AD+G E ++ L G D GL P +AA R VE+L P
Sbjct: 154 AGSPLIWAAGHGQQDAVKVLLEHNANPNAENDDNITPLLSSVAAGSLPCLELLIQAGAKVNIS-AGGATPLHIAADIGSPEILQLLLK---GGGDPNITDEDGLKPIQVAAGRGNRSAVEILFP 273
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A1R3JNB7_9ROSI (Tetratricopeptide TPR-1 n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3JNB7_9ROSI) HSP 1 Score: 55.8 bits (133), Expect = 3.560e-6 Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = 1
Query: 16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
AG + A + V+ LL +NP+ + +TPL+ A A G + + LVQAGA I +GGAT LHI AD+G E + + L A D G P +AA +R VE+L P
Sbjct: 154 AGTPLVWAAGHGQHDAVKVLLEHQANPNAETEDNITPLLSAVAAGSLACLDLLVQAGAKVNIT-AGGATPLHIAADIGNPELINSLLKAGADPN---AIDEDGQKPIQVAAGRGQRAAVEMLFP 273
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A5N6Q1A1_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q1A1_9ASTR) HSP 1 Score: 55.8 bits (133), Expect = 3.630e-6 Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1
Query: 16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSA 396
+G + A + ++ LL ++P+ G+TPL+ A A G + LVQA A I+ +GGAT LH+ AD+G E + L D GL P +AA R VE+LLP S+
Sbjct: 154 SGTPLIWAAGHGQQDALKLLLKHNADPNIETDDGITPLLSAVAAGSLQCLELLVQACAKVNII-AGGATPLHVAADIGNSELIACLLKAGADPNMT---DEDGLKPVQVAAARGNRGAVEILLPLSS 276
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A2I0ARY9_9ASPA (Putative E3 ubiquitin-protein ligase XBOS33 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ARY9_9ASPA) HSP 1 Score: 55.1 bits (131), Expect = 6.280e-6 Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1
Query: 16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELL 381
AG + A + G+V+ LL ++P+ + G+TPL+ A A G + L++AGA I +GGAT LH+ AD+G +E V L A D L P +AA R VE+L
Sbjct: 163 AGTPLIWAAGHGQQGSVKLLLEHDADPNAETEDGITPLLSAVAAGSLPCLELLIEAGASADIK-AGGATPLHVAADVGNKEIVNCLLKAGGDPN---AFDEDDLKPIQVAAARGNRVAVEIL 280 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig125374.1901.1 >prot_H-elongata_contig125374.1901.1 ID=prot_H-elongata_contig125374.1901.1|Name=mRNA_H-elongata_contig125374.1901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp NFSVIAGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGback to top mRNA from alignment at H-elongata_contig125374:1016..1762+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig125374.1901.1 ID=mRNA_H-elongata_contig125374.1901.1|Name=mRNA_H-elongata_contig125374.1901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig125374:1016..1762+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig125374:1016..1762+ >mRNA_H-elongata_contig125374.1901.1 ID=mRNA_H-elongata_contig125374.1901.1|Name=mRNA_H-elongata_contig125374.1901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig125374:1016..1762+ (Himanthalia elongata Himel1 dioecious)back to top |