mRNA_H-elongata_contig125374.1901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig125374.1901.1
Unique NamemRNA_H-elongata_contig125374.1901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: W7TSF6_9STRA (Ankyrin repeat family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSF6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.770e-19
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    1 NFSVIAGVCT-LH-AIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSG-GATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVGMEEVMARGEVR 447
            + +  AG  T LH A  +    +++ L+  G + D  N QGL+P+I+AAA GCG  V  L + GAD G +LSG G T LH+ A+ G  + V+A LAT       A Q+++   P HLAA ++ +D+VE LLP+S +   V  EE+M+ G  R
Sbjct:  184 DVNAAAGTGTPLHWASAEGAKASLEALIETGGDVDAVNDQGLSPIILAAAHGCGGCVALLAKGGADVGFILSGAGLTALHMMAEYGSLDGVQAILATGAPGVACAVQESENGKPIHLAAWAAHKDVVETLLPYSDVKETV--EELMSWGRAR 333          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: D8LBH9_ECTSI (Putative ankyrin protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.590e-17
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  259 AVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVGMEEVMARGE 441
            AVEA LAT +GRKCAA  D+QG +PAHLAAMSSR D+VE LLPHS LG DVG+E VMARG+
Sbjct:  177 AVEAILATAVGRKCAALADSQGRVPAHLAAMSSRTDLVETLLPHSGLGPDVGLEVVMARGK 237          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A7S0SRZ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRZ6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.430e-12
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   91 NPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
            +P+  +  GL P+IMAA       V  L++A  + G +LSG  T+LHICA+ G++ AV   + +  G  CA  +   G LP HLAAMS   +I+E+L+P
Sbjct:  151 DPNELSGSGLPPVIMAAVAHSEECVCLLLEANVNVGFILSGNLTLLHICAENGMKNAVALIIKSIDGINCANLETIDGNLPIHLAAMSKYEEIIEILIP 249          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A836CAJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-11
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  205 LSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVG-----MEEVMARG 438
            +SGG TVLHICAD+G   AV+A LAT++GRKCAA ++  G+ P  LAAM   R +VE L P +   +  G     +EE+MA G
Sbjct:    1 MSGGLTVLHICADLGSAAAVDALLATDVGRKCAALRNDAGMRPIDLAAMGRHRALVEKLHPVTTSNSGGGGSGETVEELMAAG 83          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A4D9AXI9_SALSN (Uncharacterized protein n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9AXI9_SALSN)

HSP 1 Score: 58.9 bits (141), Expect = 3.060e-7
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSA 396
            AG   + A    +  +V+ LL   +NPD   +  +TPL+ A A G  + +  L++AGA      +GGAT LHI AD+G  E +   L          A D  GL P  +AA    +  VE+LLP +A
Sbjct:  154 AGTPLIWAAGHGQQDSVKLLLEHKANPDAMTEDDITPLLSAVAAGSLACLELLIKAGATVNFT-AGGATPLHIAADIGSPEIINCLLQAGADPN---AIDEDGLKPVQVAASRGNKVAVEILLPVTA 276          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: F0WIY4_9STRA (Uncharacterized protein AlNc14C115G6520 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIY4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.190e-7
Identity = 46/122 (37.70%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   31 LH-AIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLA--TEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
            LH A+ + R  T   LL  G+N + RN  G+TPLI+       +  V L++A  D    +  G T LHI A+MG  E V+A L+   E     A A+   G  P  LAA +    IVELL P
Sbjct:  165 LHMAVSEKREKTACFLLEKGANVNARNPDGVTPLILCCILNVPNIAVKLLEALCDITCTVMEGLTALHIAAEMGSEEIVQAILSIRAEEAIVVANARSKAGSTPLQLAAGAKHLKIVELLKP 286          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A5N5H7R3_9ROSA (Ankyrin-1 n=5 Tax=Maleae TaxID=721813 RepID=A0A5N5H7R3_9ROSA)

HSP 1 Score: 56.6 bits (135), Expect = 1.930e-6
Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 1
Query:   16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
            AG   + A    +   V+ LL   +NP+  N   +TPL+ + A G    +  L+QAGA   I  +GGAT LHI AD+G  E ++  L    G       D  GL P  +AA    R  VE+L P
Sbjct:  154 AGSPLIWAAGHGQQDAVKVLLEHNANPNAENDDNITPLLSSVAAGSLPCLELLIQAGAKVNIS-AGGATPLHIAADIGSPEILQLLLK---GGGDPNITDEDGLKPIQVAAGRGNRSAVEILFP 273          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A1R3JNB7_9ROSI (Tetratricopeptide TPR-1 n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3JNB7_9ROSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.560e-6
Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLP 387
            AG   + A    +   V+ LL   +NP+   +  +TPL+ A A G  + +  LVQAGA   I  +GGAT LHI AD+G  E + + L          A D  G  P  +AA   +R  VE+L P
Sbjct:  154 AGTPLVWAAGHGQHDAVKVLLEHQANPNAETEDNITPLLSAVAAGSLACLDLLVQAGAKVNIT-AGGATPLHIAADIGNPELINSLLKAGADPN---AIDEDGQKPIQVAAGRGQRAAVEMLFP 273          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A5N6Q1A1_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q1A1_9ASTR)

HSP 1 Score: 55.8 bits (133), Expect = 3.630e-6
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1
Query:   16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELLLPHSA 396
            +G   + A    +   ++ LL   ++P+     G+TPL+ A A G    +  LVQA A   I+ +GGAT LH+ AD+G  E +   L            D  GL P  +AA    R  VE+LLP S+
Sbjct:  154 SGTPLIWAAGHGQQDALKLLLKHNADPNIETDDGITPLLSAVAAGSLQCLELLVQACAKVNII-AGGATPLHVAADIGNSELIACLLKAGADPNMT---DEDGLKPVQVAAARGNRGAVEILLPLSS 276          
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Match: A0A2I0ARY9_9ASPA (Putative E3 ubiquitin-protein ligase XBOS33 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ARY9_9ASPA)

HSP 1 Score: 55.1 bits (131), Expect = 6.280e-6
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1
Query:   16 AGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARGCGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKCAAAQDAQGLLPAHLAAMSSRRDIVELL 381
            AG   + A    + G+V+ LL   ++P+   + G+TPL+ A A G    +  L++AGA   I  +GGAT LH+ AD+G +E V   L          A D   L P  +AA    R  VE+L
Sbjct:  163 AGTPLIWAAGHGQQGSVKLLLEHDADPNAETEDGITPLLSAVAAGSLPCLELLIEAGASADIK-AGGATPLHVAADVGNKEIVNCLLKAGGDPN---AFDEDDLKPIQVAAARGNRVAVEIL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig125374.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
W7TSF6_9STRA1.770e-1940.13Ankyrin repeat family protein n=2 Tax=Monodopsidac... [more]
D8LBH9_ECTSI2.590e-1773.77Putative ankyrin protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S0SRZ6_9STRA4.430e-1240.40Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A836CAJ6_9STRA1.230e-1149.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9AXI9_SALSN3.060e-734.65Uncharacterized protein n=5 Tax=Salvia TaxID=21880... [more]
F0WIY4_9STRA4.190e-737.70Uncharacterized protein AlNc14C115G6520 n=1 Tax=Al... [more]
A0A5N5H7R3_9ROSA1.930e-635.48Ankyrin-1 n=5 Tax=Maleae TaxID=721813 RepID=A0A5N5... [more]
A0A1R3JNB7_9ROSI3.560e-635.48Tetratricopeptide TPR-1 n=1 Tax=Corchorus olitoriu... [more]
A0A5N6Q1A1_9ASTR3.630e-633.07Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2I0ARY9_9ASPA6.280e-634.43Putative E3 ubiquitin-protein ligase XBOS33 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig125374contigH-elongata_contig125374:1016..1762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue6.3e-15
Seed eggNOG ortholog2880.D8LBH9
KEGG rclassRC00005,RC00482
KEGG koko:K07151,ko:K19870
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,COG0666@1,KOG0504@2759,KOG0548@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_003920.1
EC2.4.99.18
COG Functional cat.J
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03036
Hectar predicted targeting categorysignal peptide
Exons2
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.6507957-CDS-H-elongata_contig125374:1015..12731622929740.6507957-CDS-H-elongata_contig125374:1015..1273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125374 1016..1273 +
1691679139.6619017-CDS-H-elongata_contig125374:1015..12731691679139.6619017-CDS-H-elongata_contig125374:1015..1273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125374 1016..1273 +
1622929740.6636145-CDS-H-elongata_contig125374:1552..17621622929740.6636145-CDS-H-elongata_contig125374:1552..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125374 1553..1762 +
1691679139.6722429-CDS-H-elongata_contig125374:1552..17621691679139.6722429-CDS-H-elongata_contig125374:1552..1762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig125374 1553..1762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig125374.1901.1prot_H-elongata_contig125374.1901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig125374 1016..1762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig125374.1901.1

>prot_H-elongata_contig125374.1901.1 ID=prot_H-elongata_contig125374.1901.1|Name=mRNA_H-elongata_contig125374.1901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
NFSVIAGVCTLHAIPQARAGTVQKLLSLGSNPDPRNKQGLTPLIMAAARG
CGSAVVHLVQAGADPGIVLSGGATVLHICADMGLREAVEATLATEIGRKC
AAAQDAQGLLPAHLAAMSSRRDIVELLLPHSALGADVGMEEVMARGEVRK
LPRRG*
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mRNA from alignment at H-elongata_contig125374:1016..1762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig125374.1901.1 ID=mRNA_H-elongata_contig125374.1901.1|Name=mRNA_H-elongata_contig125374.1901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig125374:1016..1762+ (Himanthalia elongata Himel1 dioecious)
AATTTTTCAGTTATCGCCGGTGTTTGCACTCTCCACGCCATCCCGCAGGC GAGAGCGGGGACCGTGCAGAAACTGCTGTCCCTAGGATCGAATCCGGACC CCCGCAACAAGCAAGGCCTAACCCCCTTGATCATGGCTGCCGCACGGGGA TGCGGATCTGCCGTCGTCCATCTAGTGCAAGCTGGAGCGGACCCTGGGAT CGTGCTTTCTGGGGGCGCGACTGTGCTACACATTTGTGCGGACATGGGCC TAAGAGAGGTTAATGCAGGGGCGGGCGGGCGGGCGAGGGGAAGGTAAAGG AGGGTAGTGGCTAGGGGGAAAACGCACAGCGCGAAAGCGAGCAAACCTTT TTATAGCGTAACATTCGCCCGATAGACCCAGCGCTGGCGCGGAGCCTCTC CTCTAGTCCTCGCACTTCAAGCCTATTTGAGGCCAAATCCTTCACGCCGT GTGCGGATCCAACGTTTAGCGCGAAAGCGATAGTCATATGCCCGCGTGAC CCTTCTTATCTCTGGCGTTATCGTCGCGGTTGGGCAGGCGGTTGAAGCAA CCTTAGCCACCGAGATTGGTCGCAAGTGCGCAGCCGCGCAAGATGCGCAA GGGCTCCTCCCCGCACACCTGGCAGCGATGTCGTCCAGACGGGACATCGT GGAGTTGCTGCTGCCCCACTCGGCTCTCGGAGCGGATGTCGGGATGGAGG AAGTAATGGCGCGCGGAGAGGTGAGAAAACTGCCGAGGCGAGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig125374:1016..1762+

>mRNA_H-elongata_contig125374.1901.1 ID=mRNA_H-elongata_contig125374.1901.1|Name=mRNA_H-elongata_contig125374.1901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig125374:1016..1762+ (Himanthalia elongata Himel1 dioecious)
AATTTTTCAGTTATCGCCGGTGTTTGCACTCTCCACGCCATCCCGCAGGC
GAGAGCGGGGACCGTGCAGAAACTGCTGTCCCTAGGATCGAATCCGGACC
CCCGCAACAAGCAAGGCCTAACCCCCTTGATCATGGCTGCCGCACGGGGA
TGCGGATCTGCCGTCGTCCATCTAGTGCAAGCTGGAGCGGACCCTGGGAT
CGTGCTTTCTGGGGGCGCGACTGTGCTACACATTTGTGCGGACATGGGCC
TAAGAGAGAATTTTTCAGTTATCGCCGGTGTTTGCACTCTCCACGCCATC
CCGCAGGCGAGAGCGGGGACCGTGCAGAAACTGCTGTCCCTAGGATCGAA
TCCGGACCCCCGCAACAAGCAAGGCCTAACCCCCTTGATCATGGCTGCCG
CACGGGGATGCGGATCTGCCGTCGTCCATCTAGTGCAAGCTGGAGCGGAC
CCTGGGATCGTGCTTTCTGGGGGCGCGACTGTGCTACACATTTGTGCGGA
CATGGGCCTAAGAGAGGCGGTTGAAGCAACCTTAGCCACCGAGATTGGTC
GCAAGTGCGCAGCCGCGCAAGATGCGCAAGGGCTCCTCCCCGCACACCTG
GCAGCGATGTCGTCCAGACGGGACATCGTGGAGTTGCTGCTGCCCCACTC
GGCTCTCGGAGCGGATGTCGGGATGGAGGAAGTAATGGCGCGCGGAGAGG
TGAGAAAACTGCCGAGGCGAGGGTAGGCGGTTGAAGCAACCTTAGCCACC
GAGATTGGTCGCAAGTGCGCAGCCGCGCAAGATGCGCAAGGGCTCCTCCC
CGCACACCTGGCAGCGATGTCGTCCAGACGGGACATCGTGGAGTTGCTGC
TGCCCCACTCGGCTCTCGGAGCGGATGTCGGGATGGAGGAAGTAATGGCG
CGCGGAGAGGTGAGAAAACTGCCGAGGCGAGGGTAG
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