mRNA_H-elongata_contig100166.19.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100166.19.1
Unique NamemRNA_H-elongata_contig100166.19.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: D7G200_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G200_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.530e-27
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   22 TPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            TP   +SLVFGY+VHVGCMKSVA+ TSG+RAGQLLVTGGADE +RIYDLRD+ ELGELQQH+GT+
Sbjct:   60 TPPQPLSLVFGYNVHVGCMKSVAIATSGSRAGQLLVTGGADERVRIYDLRDRTELGELQQHNGTI 124
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: A0A836CGS2_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.160e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   16 ATTPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            AT P + +S+ +GY VH GC+KS+A+   GT AG++LVTGG DE IRIYDL  + E GELQQH GTV
Sbjct:   22 ATAPDT-LSMAYGYKVHAGCVKSLAIAEKGTLAGKMLVTGGTDERIRIYDLGQRTEKGELQQHSGTV 87
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: A0A7R9Y9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   31 SSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            S + L F Y  H+GC+KS+A+ T+  R G LLV+GG DE IRIYDL  K E+GELQQH+G V
Sbjct:   38 SPLQLSFAYRAHIGCIKSLALCTTQKRGGALLVSGGTDERIRIYDLALKAEVGELQQHNGAV 99
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: A0A7R9U2R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.200e-15
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   31 SSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            S + L F Y  H+GC+KS+A+ T+  R G LLV+GG DE IRIYDL  K E+GELQQH+G V
Sbjct:   38 SPLQLSFAYRAHIGCIKSLALCTTQKRGGALLVSGGTDERIRIYDLALKAEVGELQQHNGAV 99
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: K8ZAK0_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAK0_NANGC)

HSP 1 Score: 73.2 bits (178), Expect = 1.780e-13
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   37 MSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            + ++F Y+ H G ++S+A+   G +AG LLV+GG DEHIR+YDLR + E+GEL  H GT+
Sbjct:   53 LKMIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTI 112
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: A0A7S3YLB8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLB8_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 2.720e-13
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   31 SSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            S + L +    H G +K +++T +G + G++LVTGG DE IRIYDL  K ELGELQQH GT+
Sbjct:   14 SDVQLSYALHAHEGSVKCLSITQTGAKQGRILVTGGNDELIRIYDLSKKVELGELQQHSGTI 75
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: W7TL70_9STRA (Pak1ip1 protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL70_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.270e-13
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   40 SLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            S +F Y+ H G ++S+A+   G +AG LLV+GG DEHIR+YDLR + E+GEL  H GT+
Sbjct:   37 SQIFAYTPHQGSVRSLAIPQGGVKAGSLLVSGGVDEHIRMYDLRKRAEVGELLHHKGTI 95
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: A0A0C2X428_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2X428_9AGAM)

HSP 1 Score: 63.2 bits (152), Expect = 6.060e-10
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 QPVATATTPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            +P    T  +S    +F +  H+ C+K+VA +  G   G+ L +GG DE I+++DLR K+ELG LQQH G+V
Sbjct:   88 EPTGRETGQTSEFKPIFVFPAHISCVKAVAASPQG---GKWLASGGTDEIIKVWDLRRKKELGSLQQHQGSV 156
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: G4TBN7_SERID (Related to MAK11 protein (Maintenance of killer toxin-encoding satellite M1 dsRNA) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TBN7_SERID)

HSP 1 Score: 60.1 bits (144), Expect = 7.400e-9
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   46 VFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            VF +  H+ C+K+VA +  G   G+ L TG  DE I+I+DLR ++ELG LQQH G++
Sbjct:  106 VFCFPAHISCVKAVAASPQG---GKWLATGATDETIKIWDLRRRKELGSLQQHQGSI 159
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BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Match: A0A2G8RTK2_9APHY (Transporter n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RTK2_9APHY)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-8
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   46 VFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEHIRIYDLRDKRELGELQQHDGTV 216
            +F +  HV C+KSVA++  G   G+ L TG ADE I+++DLR ++ELG L QH G++
Sbjct:  126 IFIFPAHVSCIKSVAVSPQG---GKWLATGSADEIIKVWDLRRRKELGGLMQHQGSI 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100166.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G200_ECTSI7.530e-2778.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGS2_9STRA1.160e-1759.70WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7R9Y9Y4_9STRA1.430e-1558.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9U2R5_9STRA3.200e-1558.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K8ZAK0_NANGC1.780e-1350.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3YLB8_HETAK2.720e-1351.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TL70_9STRA3.270e-1352.54Pak1ip1 protein n=1 Tax=Nannochloropsis gaditana T... [more]
A0A0C2X428_9AGAM6.060e-1041.67Uncharacterized protein n=1 Tax=Serendipita vermif... [more]
G4TBN7_SERID7.400e-947.37Related to MAK11 protein (Maintenance of killer to... [more]
A0A2G8RTK2_9APHY1.020e-847.37Transporter n=1 Tax=Ganoderma sinense ZZ0214-1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100166contigH-elongata_contig100166:21..236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7G200
Preferred namePAK1IP1
KEGG koko:K11684,ko:K14830,ko:K18272
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0294@1,KOG0294@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929544.2052968-CDS-H-elongata_contig100166:20..2361622929544.2052968-CDS-H-elongata_contig100166:20..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100166 21..236 +
1691679062.5180259-CDS-H-elongata_contig100166:20..2361691679062.5180259-CDS-H-elongata_contig100166:20..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100166 21..236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100166.19.1prot_H-elongata_contig100166.19.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100166 21..236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100166.19.1

>prot_H-elongata_contig100166.19.1 ID=prot_H-elongata_contig100166.19.1|Name=mRNA_H-elongata_contig100166.19.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
QPVATATTPSSSMSLVFGYSVHVGCMKSVAMTTSGTRAGQLLVTGGADEH
IRIYDLRDKRELGELQQHDGTV
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mRNA from alignment at H-elongata_contig100166:21..236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100166.19.1 ID=mRNA_H-elongata_contig100166.19.1|Name=mRNA_H-elongata_contig100166.19.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig100166:21..236+ (Himanthalia elongata Himel1 dioecious)
CAGCCAGTGGCCACAGCTACTACCCCCAGCAGCTCCATGTCTCTCGTGTT
TGGATATAGCGTTCACGTGGGCTGCATGAAATCAGTGGCAATGACTACGT
CTGGCACGCGCGCGGGTCAGCTCCTAGTAACGGGCGGGGCAGATGAGCAC
ATCCGAATCTACGACCTAAGAGACAAAAGGGAGCTTGGCGAGCTGCAGCA
GCACGACGGTACGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig100166:21..236+

>mRNA_H-elongata_contig100166.19.1 ID=mRNA_H-elongata_contig100166.19.1|Name=mRNA_H-elongata_contig100166.19.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig100166:21..236+ (Himanthalia elongata Himel1 dioecious)
CAGCCAGTGGCCACAGCTACTACCCCCAGCAGCTCCATGTCTCTCGTGTT
TGGATATAGCGTTCACGTGGGCTGCATGAAATCAGTGGCAATGACTACGT
CTGGCACGCGCGCGGGTCAGCTCCTAGTAACGGGCGGGGCAGATGAGCAC
ATCCGAATCTACGACCTAAGAGACAAAAGGGAGCTTGGCGAGCTGCAGCA
GCACGACGGTACGGTGCAGCCAGTGGCCACAGCTACTACCCCCAGCAGCT
CCATGTCTCTCGTGTTTGGATATAGCGTTCACGTGGGCTGCATGAAATCA
GTGGCAATGACTACGTCTGGCACGCGCGCGGGTCAGCTCCTAGTAACGGG
CGGGGCAGATGAGCACATCCGAATCTACGACCTAAGAGACAAAAGGGAGC
TTGGCGAGCTGCAGCAGCACGACGGTACGGTG
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