mRNA_H-elongata_contig12511.1890.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 135 bits (341), Expect = 3.870e-34 Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 1
Query: 10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
WRKA E E+ V+++V RP+D+ ++G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y E ++ + SIR+LLA AA D E+ D + AFL ++ EE+Y+++P ++ AV RL KA+YGL QA R W K
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKK 1155
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 123 bits (308), Expect = 1.040e-29 Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 1
Query: 10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWNN 444
W++A + E +++N ++ V+ PK K VVG+K ++K K ++G V++YK RLVAQG+ Q EGV Y+E +S +IR LLA + AK+ E+ D + AFL ++ EE+Y+ P+ Y ++ P V +L K+IYGL Q+ RCWNN
Sbjct: 825 WKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 971
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 122 bits (305), Expect = 2.690e-29 Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYR--KFPGAVGRLNKAIYGLVQAGRCWNN 444
W+KA + E +++N ++ V P DK +VG++ ++K K DG VEK+K RLVAQG+ Q EG+ Y E +S SIR LLA A D E+ D AFL D+ +E+Y++ PE YR + P V +L K++YGL Q+ RCWN+
Sbjct: 848 WKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNS 994
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 120 bits (300), Expect = 1.200e-28 Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 1
Query: 4 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
ERW+ A E+ V +Y +V RP+D+ VVG K +++ K G DG++EKYK R+VA+GF QVEGV YT+ ++ ASIR LLA AA D E+ D + AFL ++ EE+++ P ++ V +L KA+YGL QA R W K
Sbjct: 295 ERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKK 442
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 118 bits (296), Expect = 4.270e-28 Identity = 66/147 (44.90%), Postives = 86/147 (58.50%), Query Frame = 1
Query: 7 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWN 441
+W A EM+ M DN V+ V P VG+K ++KRK G V YK RLVA+GF Q +GV Y E +S SIR+LLA AA D E+ D + AFL + E++Y+ PE + K+P V +LNK+IYGL QA RCWN
Sbjct: 480 KWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWN 626
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 118 bits (296), Expect = 4.290e-28 Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 1
Query: 10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWNN 444
W++A + E +++N ++ V+ PK K VVG+K ++K K ++G V++YK RLVAQG+ Q EGV Y+E +S +IR LLA + AK+ E+ D + AFL ++ EE+Y+ P+ Y ++ P V +L K+IYGL Q+ RCWNN
Sbjct: 738 WKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 883
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 117 bits (292), Expect = 1.100e-27 Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 7 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKF-PGAVGRLNKAIYGLVQAGRCW 438
RWR+A E+ + N +K V P +K +G K +YK K DG +E+YK RLVAQGF Q+EG+ Y E +S S+R LA A AK EL D AFL D+ EE+Y+++PE ++ V +L K++YGL QA R W
Sbjct: 95 RWREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR) HSP 1 Score: 117 bits (293), Expect = 1.110e-27 Identity = 65/147 (44.22%), Postives = 86/147 (58.50%), Query Frame = 1
Query: 7 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWN 441
+W A EM+ M DN V+ V P VG+K ++KRK G V YK RLVA+GF Q +GV Y E +S SIR+LLA AA D E+ D + AFL + E++Y+ P+ + K+P V +LNK+IYGL QA RCWN
Sbjct: 813 KWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWN 959
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO) HSP 1 Score: 117 bits (293), Expect = 1.140e-27 Identity = 62/148 (41.89%), Postives = 93/148 (62.84%), Query Frame = 1
Query: 4 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
E+W++A + E++ + N + V PK++ V+ + +Y K +DG V+KYK RLVA+GF QV GV Y E +S SIRM+L AA++ LR FD + AFL +I E LY++ P+ Y+ V +LN+++YGL QA RCWN +
Sbjct: 211 EQWKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQR 358
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO) HSP 1 Score: 116 bits (291), Expect = 1.610e-27 Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 1
Query: 4 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
E W++A + E++ + N + V PK++ + + +YK K +DG V+KYK RLVA+GF QV GV Y E +S SIRM+L A ++ LR FD + AFL +I E LY++ P+ Y+ V +LN+++YGL QA RCWN +
Sbjct: 146 EHWKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQR 293 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12511.1890.1 >prot_H-elongata_contig12511.1890.1 ID=prot_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp MERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEback to top mRNA from alignment at H-elongata_contig12511:7173..7619+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12511.1890.1 ID=mRNA_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig12511:7173..7619+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12511:7173..7619+ >mRNA_H-elongata_contig12511.1890.1 ID=mRNA_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig12511:7173..7619+ (Himanthalia elongata Himel1 dioecious)back to top |