mRNA_H-elongata_contig12511.1890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12511.1890.1
Unique NamemRNA_H-elongata_contig12511.1890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 135 bits (341), Expect = 3.870e-34
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 1
Query:   10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
            WRKA E E+       V+++V RP+D+ ++G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y E ++    + SIR+LLA AA  D E+   D + AFL  ++ EE+Y+++P  ++    AV RL KA+YGL QA R W  K
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKK 1155          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 123 bits (308), Expect = 1.040e-29
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 1
Query:   10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWNN 444
            W++A + E   +++N  ++ V+ PK K VVG+K ++K K  ++G V++YK RLVAQG+ Q EGV Y+E +S      +IR LLA + AK+ E+   D + AFL  ++ EE+Y+  P+ Y  ++ P  V +L K+IYGL Q+ RCWNN
Sbjct:  825 WKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 971          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 122 bits (305), Expect = 2.690e-29
Identity = 63/147 (42.86%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYR--KFPGAVGRLNKAIYGLVQAGRCWNN 444
            W+KA + E   +++N  ++ V  P DK +VG++ ++K K   DG VEK+K RLVAQG+ Q EG+ Y E +S      SIR LLA A   D E+   D   AFL  D+ +E+Y++ PE YR  + P  V +L K++YGL Q+ RCWN+
Sbjct:  848 WKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNS 994          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 120 bits (300), Expect = 1.200e-28
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    4 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
            ERW+ A   E+   V   +Y +V RP+D+ VVG K +++ K G DG++EKYK R+VA+GF QVEGV YT+ ++     ASIR LLA AA  D E+   D + AFL  ++ EE+++  P  ++     V +L KA+YGL QA R W  K
Sbjct:  295 ERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKK 442          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 118 bits (296), Expect = 4.270e-28
Identity = 66/147 (44.90%), Postives = 86/147 (58.50%), Query Frame = 1
Query:    7 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWN 441
            +W  A   EM+ M DN V+  V  P     VG+K ++KRK    G V  YK RLVA+GF Q +GV Y E +S      SIR+LLA AA  D E+   D + AFL   + E++Y+  PE +   K+P  V +LNK+IYGL QA RCWN
Sbjct:  480 KWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWN 626          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 118 bits (296), Expect = 4.290e-28
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 1
Query:   10 WRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWNN 444
            W++A + E   +++N  ++ V+ PK K VVG+K ++K K  ++G V++YK RLVAQG+ Q EGV Y+E +S      +IR LLA + AK+ E+   D + AFL  ++ EE+Y+  P+ Y  ++ P  V +L K+IYGL Q+ RCWNN
Sbjct:  738 WKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNN 883          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 117 bits (292), Expect = 1.100e-27
Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    7 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKF-PGAVGRLNKAIYGLVQAGRCW 438
            RWR+A   E+  +  N  +K V  P +K  +G K +YK K   DG +E+YK RLVAQGF Q+EG+ Y E +S      S+R  LA A AK  EL   D   AFL  D+ EE+Y+++PE ++      V +L K++YGL QA R W
Sbjct:   95 RWREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR)

HSP 1 Score: 117 bits (293), Expect = 1.110e-27
Identity = 65/147 (44.22%), Postives = 86/147 (58.50%), Query Frame = 1
Query:    7 RWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWN 441
            +W  A   EM+ M DN V+  V  P     VG+K ++KRK    G V  YK RLVA+GF Q +GV Y E +S      SIR+LLA AA  D E+   D + AFL   + E++Y+  P+ +   K+P  V +LNK+IYGL QA RCWN
Sbjct:  813 KWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWN 959          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO)

HSP 1 Score: 117 bits (293), Expect = 1.140e-27
Identity = 62/148 (41.89%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    4 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
            E+W++A + E++ +  N  +  V  PK++ V+  + +Y  K  +DG V+KYK RLVA+GF QV GV Y E +S      SIRM+L  AA++   LR FD + AFL  +I E LY++ P+ Y+     V +LN+++YGL QA RCWN +
Sbjct:  211 EQWKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQR 358          
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO)

HSP 1 Score: 116 bits (291), Expect = 1.610e-27
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    4 ERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFDAEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK 447
            E W++A + E++ +  N  +  V  PK++  +  + +YK K  +DG V+KYK RLVA+GF QV GV Y E +S      SIRM+L  A ++   LR FD + AFL  +I E LY++ P+ Y+     V +LN+++YGL QA RCWN +
Sbjct:  146 EHWKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQR 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12511.1890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.870e-3446.58Integrase catalytic domain-containing protein (Fra... [more]
A0A7D9D6Q5_PARCT1.040e-2942.18Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9IUY0_PARCT2.690e-2942.86Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1C7MSU6_GRIFR1.200e-2843.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LW24_9ASTR4.270e-2844.90Integrase catalytic domain-containing protein n=2 ... [more]
A0A7D9HXK4_PARCT4.290e-2842.18Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438GNV2_VITVI1.100e-2742.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6MMD4_9ASTR1.110e-2744.22Uncharacterized protein n=6 Tax=Mikania micrantha ... [more]
A0A8J6LHG9_TENMO1.140e-2741.89Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LFP5_TENMO1.610e-2741.22Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12511contigH-elongata_contig12511:7173..7619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.4
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog15368.BRADI3G60275.1
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.2396276-CDS-H-elongata_contig12511:7172..76191622929739.2396276-CDS-H-elongata_contig12511:7172..7619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12511 7173..7619 +
1691679139.0270264-CDS-H-elongata_contig12511:7172..76191691679139.0270264-CDS-H-elongata_contig12511:7172..7619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12511 7173..7619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12511.1890.1prot_H-elongata_contig12511.1890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12511 7173..7619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12511.1890.1

>prot_H-elongata_contig12511.1890.1 ID=prot_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MERWRKAEEIEMRGMVDNCVYKQVARPKDKFVVGTKMLYKRKVGQDGKVE
KYKCRLVAQGFWQVEGVHYTEKYSSTPSTASIRMLLATAAAKDGELRHFD
AEQAFLTADIGEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWNNK
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mRNA from alignment at H-elongata_contig12511:7173..7619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12511.1890.1 ID=mRNA_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig12511:7173..7619+ (Himanthalia elongata Himel1 dioecious)
ATGGAACGTTGGCGGAAAGCAGAGGAAATAGAGATGCGTGGCATGGTCGA TAACTGCGTTTATAAGCAGGTGGCTCGGCCGAAGGATAAGTTTGTGGTTG GCACGAAAATGCTCTACAAACGAAAAGTTGGACAGGACGGCAAGGTCGAG AAATACAAGTGCCGGCTTGTAGCTCAAGGGTTCTGGCAGGTAGAGGGTGT GCACTATACGGAGAAATACTCATCCACGCCATCGACCGCATCAATCCGGA TGCTTTTGGCCACAGCAGCGGCCAAGGATGGTGAGCTGCGCCATTTCGAC GCGGAGCAGGCATTCCTGACAGCAGACATCGGTGAGGAATTGTACATTGA GATCCCTGAGGAGTATCGGAAGTTTCCGGGGGCAGTGGGACGACTGAACA AGGCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig12511:7173..7619+

>mRNA_H-elongata_contig12511.1890.1 ID=mRNA_H-elongata_contig12511.1890.1|Name=mRNA_H-elongata_contig12511.1890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig12511:7173..7619+ (Himanthalia elongata Himel1 dioecious)
ATGGAACGTTGGCGGAAAGCAGAGGAAATAGAGATGCGTGGCATGGTCGA
TAACTGCGTTTATAAGCAGGTGGCTCGGCCGAAGGATAAGTTTGTGGTTG
GCACGAAAATGCTCTACAAACGAAAAGTTGGACAGGACGGCAAGGTCGAG
AAATACAAGTGCCGGCTTGTAGCTCAAGGGTTCTGGCAGGTAGAGGGTGT
GCACTATACGGAGAAATACTCATCCACGCCATCGACCGCATCAATCCGGA
TGCTTTTGGCCACAGCAGCGGCCAAGGATGGTGAGCTGCGCCATTTCGAC
GCGGAGCAGGCATTCCTGACAGCAGACATCGGTGAGGAATTGTACATTGA
GATCCCTGAGGAGTATCGGAAGTTTCCGGGGGCAGTGGGACGACTGAACA
AGGCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGATG
GAACGTTGGCGGAAAGCAGAGGAAATAGAGATGCGTGGCATGGTCGATAA
CTGCGTTTATAAGCAGGTGGCTCGGCCGAAGGATAAGTTTGTGGTTGGCA
CGAAAATGCTCTACAAACGAAAAGTTGGACAGGACGGCAAGGTCGAGAAA
TACAAGTGCCGGCTTGTAGCTCAAGGGTTCTGGCAGGTAGAGGGTGTGCA
CTATACGGAGAAATACTCATCCACGCCATCGACCGCATCAATCCGGATGC
TTTTGGCCACAGCAGCGGCCAAGGATGGTGAGCTGCGCCATTTCGACGCG
GAGCAGGCATTCCTGACAGCAGACATCGGTGAGGAATTGTACATTGAGAT
CCCTGAGGAGTATCGGAAGTTTCCGGGGGCAGTGGGACGACTGAACAAGG
CCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAG
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