prot_H-elongata_contig12492.1881.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12492.1881.1
Unique Nameprot_H-elongata_contig12492.1881.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length232
Homology
BLAST of mRNA_H-elongata_contig12492.1881.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.760e-33
Identity = 100/253 (39.53%), Postives = 134/253 (52.96%), Query Frame = 0
Query:    1 AQEEWRATCESVARFIGIPPDLGMTETAVLEGAFDTIARLTRAAPAPGSAHNNQDDTQTGEIGEGNHSGASAAEIIKTRDKLASRDLAGDHRPSTSSAGMFK------GGRAPKS-----APDRSEV-RIPASEILLLLRSGAIEGHRRASPALTAICVHREFAEGLGEAASDIEAGPPCGWAGRGEDARDR-----------DVVGDPASTPAAYHREANQRSLSKAEFCEYLEAVTDLVELNGLNLTQTRP 230
            A+EEW+ATC+SVARFIGIPPDLG TET VLE AFD I  L   +P   +A ++ +    G+    +  G    + I T    A++    +   +T   G+ +      GG   +       PD     R+PA EI+ LLR+GAI+G+RRASPAL+A C++ EFAEGL  AA+            RG+D   R           D  GD         R+  +  +SK EFC+Y EAVTDLV+LNGL+L    P
Sbjct: 1150 AEEEWKATCDSVARFIGIPPDLGETETEVLEKAFDAIVNLV--SPTTQAALDSDETDAVGDARGKSGKGIKGPKGITT--PTANQPPNPNREDATQQGGLARRRQHEDGGHLERKNGLVGTPDADAAPRVPAGEIIRLLRAGAIDGYRRASPALSAACIYAEFAEGLEGAAAT-----------RGQDREARTANHPIADCCTDEEGDTRGGQRG-SRDKGEWGISKEEFCDYFEAVTDLVDLNGLSLVPQVP 1386          
BLAST of mRNA_H-elongata_contig12492.1881.1 vs. uniprot
Match: A0A6H5JU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU28_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.800e-33
Identity = 104/247 (42.11%), Postives = 132/247 (53.44%), Query Frame = 0
Query:    1 AQEEWRATCESVARFIGIPPDLGMTETAVLEGAFDTIARLTRAAP--APGSAHNNQDDTQTGEIGEG------NHSGASAAEIIKTRDKLASRDLAGDHRPSTSSAGMFKGGRAPKSAPDRSEVRIPASEILLLLRSGAIEGHRRASPALTAICVHREFAEGLGEAASDIEAGPPCGWAGRGEDARDR-------DVVGDPASTPAAYHREANQRS--LSKAEFCEYLEAVTDLVELNGLNLTQTRP 230
            A+EEW+ATC+SVARFIGIPPDLG TET VL+ AFD I  L       A GS   +      G+ G+G      N    S  E    +  LA R    D     +  G+  G R   +AP     R+PASEI+ LLR+GAI+G+RRASPAL+A C++ EFAEGL +AA+            RG+D+  R       D   D   T         +    +SK EFC+Y EAVTDLV+LNGL+L    P
Sbjct:  733 AEEEWKATCDSVARFIGIPPDLGETETEVLQKAFDAIVNLVSPTTQAALGSDKADAVGDARGKGGKGITTPTANQPPNSNREDATQQGGLARRRQHEDGGHLETKNGVV-GTRDADAAP-----RVPASEIIRLLRAGAIDGYRRASPALSAACIYPEFAEGLEDAAAT-----------RGQDSEARAANHPIADCGTDEGDTRGGQQGGGGEEEWGVSKEEFCDYFEAVTDLVDLNGLSLVPQVP 962          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12492.1881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFK6_ECTSI2.760e-3339.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU28_9PHAE4.800e-3342.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12492contigH-elongata_contig12492:6415..7820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12492.1881.1mRNA_H-elongata_contig12492.1881.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12492 6415..7820 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12492.1881.1 ID=prot_H-elongata_contig12492.1881.1|Name=mRNA_H-elongata_contig12492.1881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
AQEEWRATCESVARFIGIPPDLGMTETAVLEGAFDTIARLTRAAPAPGSA
HNNQDDTQTGEIGEGNHSGASAAEIIKTRDKLASRDLAGDHRPSTSSAGM
FKGGRAPKSAPDRSEVRIPASEILLLLRSGAIEGHRRASPALTAICVHRE
FAEGLGEAASDIEAGPPCGWAGRGEDARDRDVVGDPASTPAAYHREANQR
SLSKAEFCEYLEAVTDLVELNGLNLTQTRPP*
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