mRNA_H-elongata_contig12492.1881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12492.1881.1
Unique NamemRNA_H-elongata_contig12492.1881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12492.1881.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.760e-33
Identity = 100/253 (39.53%), Postives = 134/253 (52.96%), Query Frame = 1 
Query:    1 AQEEWRATCESVARFIGIPPDLGMTETAVLEGAFDTIARLTRAAPAPGSAHNNQDDTQTGEIGEGNHSGASAAEIIKTRDKLASRDLAGDHRPSTSSAGMFK------GGRAPKS-----APDRSEV-RIPASEILLLLRSGAIEGHRRASPALTAICVHREFAEGLGEAASDIEAGPPCGWAGRGEDARDR-----------DVVGDPASTPAAYHREANQRSLSKAEFCEYLEAVTDLVELNGLNLTQTRP 690
            A+EEW+ATC+SVARFIGIPPDLG TET VLE AFD I  L   +P   +A ++ +    G+    +  G    + I T    A++    +   +T   G+ +      GG   +       PD     R+PA EI+ LLR+GAI+G+RRASPAL+A C++ EFAEGL  AA+            RG+D   R           D  GD         R+  +  +SK EFC+Y EAVTDLV+LNGL+L    P
Sbjct: 1150 AEEEWKATCDSVARFIGIPPDLGETETEVLEKAFDAIVNLV--SPTTQAALDSDETDAVGDARGKSGKGIKGPKGITT--PTANQPPNPNREDATQQGGLARRRQHEDGGHLERKNGLVGTPDADAAPRVPAGEIIRLLRAGAIDGYRRASPALSAACIYAEFAEGLEGAAAT-----------RGQDREARTANHPIADCCTDEEGDTRGGQRG-SRDKGEWGISKEEFCDYFEAVTDLVDLNGLSLVPQVP 1386
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BLAST of mRNA_H-elongata_contig12492.1881.1 vs. uniprot
Match: A0A6H5JU28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU28_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.800e-33
Identity = 104/247 (42.11%), Postives = 132/247 (53.44%), Query Frame = 1 
Query:    1 AQEEWRATCESVARFIGIPPDLGMTETAVLEGAFDTIARLTRAAP--APGSAHNNQDDTQTGEIGEG------NHSGASAAEIIKTRDKLASRDLAGDHRPSTSSAGMFKGGRAPKSAPDRSEVRIPASEILLLLRSGAIEGHRRASPALTAICVHREFAEGLGEAASDIEAGPPCGWAGRGEDARDR-------DVVGDPASTPAAYHREANQRS--LSKAEFCEYLEAVTDLVELNGLNLTQTRP 690
            A+EEW+ATC+SVARFIGIPPDLG TET VL+ AFD I  L       A GS   +      G+ G+G      N    S  E    +  LA R    D     +  G+  G R   +AP     R+PASEI+ LLR+GAI+G+RRASPAL+A C++ EFAEGL +AA+            RG+D+  R       D   D   T         +    +SK EFC+Y EAVTDLV+LNGL+L    P
Sbjct:  733 AEEEWKATCDSVARFIGIPPDLGETETEVLQKAFDAIVNLVSPTTQAALGSDKADAVGDARGKGGKGITTPTANQPPNSNREDATQQGGLARRRQHEDGGHLETKNGVV-GTRDADAAP-----RVPASEIIRLLRAGAIDGYRRASPALSAACIYPEFAEGLEDAAAT-----------RGQDSEARAANHPIADCGTDEGDTRGGQQGGGGEEEWGVSKEEFCDYFEAVTDLVDLNGLSLVPQVP 962
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12492.1881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFK6_ECTSI2.760e-3339.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU28_9PHAE4.800e-3342.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12492contigH-elongata_contig12492:6415..7820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2880.D8LFK6
EggNOG OGs29WS3@1,2RXQ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size696
Cds size696
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.1195867-CDS-H-elongata_contig12492:6414..70611622929738.1195867-CDS-H-elongata_contig12492:6414..7061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 6415..7061 -
1691679138.7133837-CDS-H-elongata_contig12492:6414..70611691679138.7133837-CDS-H-elongata_contig12492:6414..7061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 6415..7061 -
1622929738.1350894-CDS-H-elongata_contig12492:7771..78201622929738.1350894-CDS-H-elongata_contig12492:7771..7820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 7772..7820 -
1691679138.7244244-CDS-H-elongata_contig12492:7771..78201691679138.7244244-CDS-H-elongata_contig12492:7771..7820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12492 7772..7820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12492.1881.1prot_H-elongata_contig12492.1881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12492 6415..7820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12492.1881.1

>prot_H-elongata_contig12492.1881.1 ID=prot_H-elongata_contig12492.1881.1|Name=mRNA_H-elongata_contig12492.1881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
AQEEWRATCESVARFIGIPPDLGMTETAVLEGAFDTIARLTRAAPAPGSA
HNNQDDTQTGEIGEGNHSGASAAEIIKTRDKLASRDLAGDHRPSTSSAGM
FKGGRAPKSAPDRSEVRIPASEILLLLRSGAIEGHRRASPALTAICVHRE
FAEGLGEAASDIEAGPPCGWAGRGEDARDRDVVGDPASTPAAYHREANQR
SLSKAEFCEYLEAVTDLVELNGLNLTQTRPP*
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mRNA from alignment at H-elongata_contig12492:6415..7820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12492.1881.1 ID=mRNA_H-elongata_contig12492.1881.1|Name=mRNA_H-elongata_contig12492.1881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1406bp|location=Sequence derived from alignment at H-elongata_contig12492:6415..7820- (Himanthalia elongata Himel1 dioecious)
GCTCAGGAAGAGTGGAGAGCCACCTGTGAGAGCGTGGCGAGATTCATCGG
TACGCTTTCTTCCTCGGCGTGAACAACGTCTCGTTGCTGCTTTGCCCCTT
TTGTGTCGCTCGCCGGTAATGCGCACGTGTACTCAAGCGGACCGTCTTGA
CCCCTAACTACGAGGGGCGGCATCGTTGCAAAATTAATTACGATATTTAG
TGTATTTATTTAATTGCACGTATTAACCACGCAATCCGGCTCTGTCATGC
TAGCTCTTCTAGGCTACTCCTCTCGCATTGATCCTCCCAATGGGAGATAC
AATCATATATGTGTATGTGTTTGTGCATGTGAGTTCGTGAATGGCTCGAC
CCCACCGAATAAACGATTATTTTTAACGTGTGGTTCCAGGGACCCAAATA
TATCTTGAGGAGGCGTTATCTAGGGGCAGGGCGTACACACAGTTTGTATG
CCCCAGCTTTATTTAATGACCATTTTGCCCACGCGTCCTCGGGAGGGTGA
ACGGAGCATTGTTCCCAAATGATTAGAGGGTATGTTTGTGTGGCGTGGAC
GTTCCCTGCGAAAACCCCAAAACGTGTTTATTGTTCCCTCTGGTTGCATA
AACTTTTTTTTATCATGGGGAATTAAAAAAGGCGGCTCGAAGGTCGTTGT
GGGAAAATGAATGGACACTTTTTTTGAATAAACACAAAAATAAAGACACA
CACACATAAACACACACGCGCGCGCATGATCGTGTGCAACCATGGGCCGC
CTTGCGCAGGCATACCTCCCGATCTCGGAATGACAGAAACCGCGGTACTT
GAGGGAGCCTTCGACACCATCGCGCGCTTGACAAGGGCCGCGCCAGCGCC
AGGAAGCGCCCACAATAATCAGGATGATACGCAGACTGGGGAAATCGGCG
AAGGTAACCACAGTGGCGCCTCTGCTGCCGAAATTATCAAGACACGAGAC
AAACTCGCATCGAGAGACCTGGCGGGAGACCATCGCCCGTCTACGTCATC
TGCGGGGATGTTCAAGGGAGGCCGTGCCCCAAAAAGCGCGCCCGACAGGA
GCGAGGTGCGCATTCCCGCCAGCGAGATCCTGCTCCTCTTGCGCTCGGGA
GCGATAGAAGGTCACCGTAGGGCCAGTCCGGCCCTCACGGCAATCTGCGT
GCATCGGGAGTTTGCCGAAGGCTTGGGAGAAGCGGCAAGCGACATAGAAG
CGGGGCCGCCTTGCGGATGGGCCGGGAGGGGCGAGGATGCTCGTGATCGC
GACGTTGTGGGTGACCCGGCCTCGACTCCAGCCGCGTATCATAGGGAAGC
GAACCAGCGGAGTTTGTCGAAGGCGGAGTTCTGCGAGTACTTGGAGGCGG
TGACGGATCTGGTCGAACTAAACGGTCTGAACTTGACACAAACGAGACCA
CCATAG
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Coding sequence (CDS) from alignment at H-elongata_contig12492:6415..7820-

>mRNA_H-elongata_contig12492.1881.1 ID=mRNA_H-elongata_contig12492.1881.1|Name=mRNA_H-elongata_contig12492.1881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig12492:6415..7820- (Himanthalia elongata Himel1 dioecious)
GCTCAGGAAGAGTGGAGAGCCACCTGTGAGAGCGTGGCGAGATTCATCGG
CTCAGGAAGAGTGGAGAGCCACCTGTGAGAGCGTGGCGAGATTCATCGGC
ATACCTCCCGATCTCGGAATGACAGAAACCGCGGTACTTGAGGGAGCCTT
CGACACCATCGCGCGCTTGACAAGGGCCGCGCCAGCGCCAGGAAGCGCCC
ACAATAATCAGGATGATACGCAGACTGGGGAAATCGGCGAAGGTAACCAC
AGTGGCGCCTCTGCTGCCGAAATTATCAAGACACGAGACAAACTCGCATC
GAGAGACCTGGCGGGAGACCATCGCCCGTCTACGTCATCTGCGGGGATGT
TCAAGGGAGGCCGTGCCCCAAAAAGCGCGCCCGACAGGAGCGAGGTGCGC
ATTCCCGCCAGCGAGATCCTGCTCCTCTTGCGCTCGGGAGCGATAGAAGG
TCACCGTAGGGCCAGTCCGGCCCTCACGGCAATCTGCGTGCATCGGGAGT
TTGCCGAAGGCTTGGGAGAAGCGGCAAGCGACATAGAAGCGGGGCCGCCT
TGCGGATGGGCCGGGAGGGGCGAGGATGCTCGTGATCGCGACGTTGTGGG
TGACCCGGCCTCGACTCCAGCCGCGTATCATAGGGAAGCGAACCAGCGGA
GTTTGTCGAAGGCGGAGTTCTGCGAGTACTTGGAGGCGGTGACGGATCTG
GTCGAACTAAACGGTCTGAACTTGACACAAACGAGACCACCATAGGCATA
CCTCCCGATCTCGGAATGACAGAAACCGCGGTACTTGAGGGAGCCTTCGA
CACCATCGCGCGCTTGACAAGGGCCGCGCCAGCGCCAGGAAGCGCCCACA
ATAATCAGGATGATACGCAGACTGGGGAAATCGGCGAAGGTAACCACAGT
GGCGCCTCTGCTGCCGAAATTATCAAGACACGAGACAAACTCGCATCGAG
AGACCTGGCGGGAGACCATCGCCCGTCTACGTCATCTGCGGGGATGTTCA
AGGGAGGCCGTGCCCCAAAAAGCGCGCCCGACAGGAGCGAGGTGCGCATT
CCCGCCAGCGAGATCCTGCTCCTCTTGCGCTCGGGAGCGATAGAAGGTCA
CCGTAGGGCCAGTCCGGCCCTCACGGCAATCTGCGTGCATCGGGAGTTTG
CCGAAGGCTTGGGAGAAGCGGCAAGCGACATAGAAGCGGGGCCGCCTTGC
GGATGGGCCGGGAGGGGCGAGGATGCTCGTGATCGCGACGTTGTGGGTGA
CCCGGCCTCGACTCCAGCCGCGTATCATAGGGAAGCGAACCAGCGGAGTT
TGTCGAAGGCGGAGTTCTGCGAGTACTTGGAGGCGGTGACGGATCTGGTC
GAACTAAACGGTCTGAACTTGACACAAACGAGACCACCATAG
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