mRNA_H-elongata_contig124845.1869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124845.1869.1
Unique NamemRNA_H-elongata_contig124845.1869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.000e-31
Identity = 59/134 (44.03%), Postives = 86/134 (64.18%), Query Frame = 2
Query:    2 EGPAVMSLGHAEYFAEVSFRKNSLFCVKGKYGFDNGSEGSDTCRIEVVCSRCNIECNEVSGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
            +G AV S+G  +    V+F  N+L C  G+Y +D  +E  D+CR E+ C+RC+ +C+ +  S+ + +ST+PVC  +  G     +G TV TL+L +GYYRTS +SQ V ECY + AC GG++  NYCA GY GP
Sbjct:  253 DGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAE-DDSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGP 385          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.720e-30
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 2
Query:    2 EGPAVMSLGHAEYFAEVSFRKNSLFCVKGKYGFDNGSEGSDTCRIEVVCSRCNIECNEVSGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
            +G AV S+G  +    V+F  N+L C  G+  +D  +E  D+CR E+ C+RC+ +C+ +  S+ + +ST+PVC     G     +G TV TL+L +GYYRTS +SQ V ECY + AC GG++  NYCA GY GP
Sbjct:  494 DGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAE-DDSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGP 626          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.070e-29
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 2
Query:    5 GPAVMSLGHAEYFAEVSFRKNSLFCVKGKYGFD---NGSEGSDTCRIEVVCSRCNIECNEVSGSIIL-DESTVPVCEVVPTGVNEK-KAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTG 400
            G AV SLG A    + +F  N+ +C  G+YG++      E S TCR  VVCS C   C +  GS+++ +++ VP+CE   TGV+     G+T+  L LL+GYYRTS +SQ+V +CY+ EACIGG++ S YC +GY G
Sbjct:  518 GLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRG 654          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 5.830e-29
Identity = 62/132 (46.97%), Postives = 85/132 (64.39%), Query Frame = 2
Query:   32 AEYFAEVSFRKNSLFCVKGKYGFDN---GSEGSDTCRIEVVCSRC-NIECNEV----SGSIILDESTVPVCEVVPTGVNEK-KAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTG 400
            AE F +V+F +N+ +C  G+YG D      E +DTCR+EVVCSRC +  C +     +G  +L+++ VP C+ V  GVN    AG T++TL+L  GYYRTS +S  + EC+R EAC+GGS A  YCA GY G
Sbjct:  300 AENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQG 431          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.810e-23
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   65 NSLFCVKGKYGFDNGSE-----GSDTCRIEVVCSRCNIECNEV--SGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
            N  +C +G++G +   +     G+D CR   VCSRC  EC+    S + ++D  T+P CE  P G    + G T+ TLE+L G+YR+S  S D+REC+  +AC GGS    YCA+GY GP
Sbjct:  514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGP 633          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.950e-22
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   65 NSLFCVKGKYGFDNGSE-----GSDTCRIEVVCSRCNIEC-NEVSGSI-ILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
            N  +C +G++G +   +     G+D CR   VCSRC  EC +E+  +  ++D  T+P CE  P G    + G T+ TLE+L G+YR+S  S D+REC+  +AC GGS    YC++GY GP
Sbjct:  490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGP 609          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7S4MJB6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MJB6_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 4.930e-10
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 2
Query:  218 CEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNA-SNYCAQGYTGP 403
            C   P G +    G ++ETL L  G++RT NQS+DVREC+ S+ACIG  NA S+ CA G+ GP
Sbjct:  139 CTACPHGADCSTQGTSLETLPLKAGFWRTGNQSEDVRECFTSDACIGSCNATSSVCADGHLGP 201          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.060e-9
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  218 CEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
            C  +  G+     G+T+ETL L  G++RTSN S D+REC  + AC+GG N++N C +G+TGP
Sbjct:  181 CVEIVEGIRNDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGG-NSTNMCREGHTGP 241          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7R9U892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U892_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.370e-8
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 2
Query:  215 VCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGY 394
            VCE    GV     G  +  L LL G++R+  QS DVREC   +AC+GG+NA +YCA G+
Sbjct:   13 VCETCGEGVVCNDFGNKLTNLTLLPGFWRSGRQSTDVRECIERDACVGGTNADDYCAPGH 72          
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7R9U1A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.120e-8
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  215 VCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGY 394
            VC     G+     G  + TL+L +GY+R+   S D+R+C   +AC+GG++ASNYCA+G+
Sbjct:   13 VCVFCGEGLTCNSFGNVLPTLQLQRGYWRSGPMSGDIRDCISRDACVGGTDASNYCAEGH 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FWD7_ECTSI1.000e-3144.03Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JSF5_9PHAE1.720e-3043.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE2.070e-2944.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB6_ECTSI5.830e-2946.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI1.810e-2341.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE2.950e-2240.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4MJB6_9EUKA4.930e-1050.79Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2VWR0_9STRA3.060e-946.77Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7R9U892_9STRA3.370e-846.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7R9U1A3_9STRA4.120e-841.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124845contigH-elongata_contig124845:640..1502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FTU5
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size404
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124845.1869.1prot_H-elongata_contig124845.1869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124845 640..1486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.074075-CDS-H-elongata_contig124845:639..9271622929737.074075-CDS-H-elongata_contig124845:639..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124845 640..927 -
1691679138.3790665-CDS-H-elongata_contig124845:639..9271691679138.3790665-CDS-H-elongata_contig124845:639..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124845 640..927 -
1622929737.096117-CDS-H-elongata_contig124845:1387..14861622929737.096117-CDS-H-elongata_contig124845:1387..1486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124845 1388..1486 -
1691679138.3932443-CDS-H-elongata_contig124845:1387..14861691679138.3932443-CDS-H-elongata_contig124845:1387..1486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124845 1388..1486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.1122048-UTR-H-elongata_contig124845:1486..15021622929737.1122048-UTR-H-elongata_contig124845:1486..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124845 1487..1502 -
1691679138.4037504-UTR-H-elongata_contig124845:1486..15021691679138.4037504-UTR-H-elongata_contig124845:1486..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig124845 1487..1502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124845.1869.1

>prot_H-elongata_contig124845.1869.1 ID=prot_H-elongata_contig124845.1869.1|Name=mRNA_H-elongata_contig124845.1869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MSLGHAEYFAEVSFRKNSLFCVKGKYGFDNGSEGSDTCRIEVVCSRCNIE
CNEVSGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQS
QDVRECYRSEACIGGSNASNYCAQGYTGP
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mRNA from alignment at H-elongata_contig124845:640..1502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124845.1869.1 ID=mRNA_H-elongata_contig124845.1869.1|Name=mRNA_H-elongata_contig124845.1869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=863bp|location=Sequence derived from alignment at H-elongata_contig124845:640..1502- (Himanthalia elongata Himel1 dioecious)
GGAGGGGCCAGCAGTAATGAGTCTCGGTCATGCCGAATATTTCGCAGAAG TATCGTTCCGAAAAAACTCGTTATTCTGTGTCAAGGGCAAGTACGGGTTC GACAACGGCAGTGAGGTGATCGTGTAAAAACTGGTTTCCAATCGTCACTC AAACTCCAAATAAATCGCAGCTTCGCAGCTTGATTCTTCCCCCGTCGTCT GCCGTTGCCGTTTTATGGCCATCAGAGGATATTATTGCCTGTCGATATAT GGCGATCTTCTCGTTTAGGAGTAGTTTTATCATTGGAATGCGTTTTCCTC TCTTAGCTTTGGGTGCAATGTTTTCGTAAGTACACATTTTGGAGGGCCGA TTATGGTTAAACCACGAAATATCGAGCCCGCAACATATTTGGATATACTT TAGGTTCAGTTTGTAATTAATGATTATCTCGACAATCGCCACACATATAT AGCCTACAACGCTTTCGGGGTGTTTCTTCCGGCACGTGGCGTAATCTACG TTATCAACGCATCGACGACAAAAACTTAATAACAAACACGAGCTACCCCC GCCTCGCCAATCTCTCCGCTCCCAGGGTTCCGATACATGTCGTATAGAGG TCGTCTGCTCTCGTTGCAACATCGAGTGTAACGAAGTCTCCGGAAGCATT ATCTTAGACGAATCAACGGTACCAGTTTGCGAGGTAGTCCCTACAGGGGT GAACGAAAAAAAGGCAGGAATGACCGTCGAGACGCTCGAACTCTTACAAG GGTATTACCGAACTTCAAACCAGAGCCAGGATGTACGAGAGTGTTATAGA TCGGAGGCTTGTATCGGAGGCTCAAACGCAAGTAACTACTGTGCACAGGG CTACACAGGTCCA
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Coding sequence (CDS) from alignment at H-elongata_contig124845:640..1502-

>mRNA_H-elongata_contig124845.1869.1 ID=mRNA_H-elongata_contig124845.1869.1|Name=mRNA_H-elongata_contig124845.1869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig124845:640..1502- (Himanthalia elongata Himel1 dioecious)
ATGAGTCTCGGTCATGCCGAATATTTCGCAGAAGTATCGTTCCGAAAAAA
CTCGTTATTCTGTGTCAAGGGCAAGTACGGGTTCGACAACGGCAGTGAGA
TGAGTCTCGGTCATGCCGAATATTTCGCAGAAGTATCGTTCCGAAAAAAC
TCGTTATTCTGTGTCAAGGGCAAGTACGGGTTCGACAACGGCAGTGAGGG
TTCCGATACATGTCGTATAGAGGTCGTCTGCTCTCGTTGCAACATCGAGT
GTAACGAAGTCTCCGGAAGCATTATCTTAGACGAATCAACGGTACCAGTT
TGCGAGGTAGTCCCTACAGGGGTGAACGAAAAAAAGGCAGGAATGACCGT
CGAGACGCTCGAACTCTTACAAGGGTATTACCGAACTTCAAACCAGAGCC
AGGATGTACGAGAGTGTTATAGATCGGAGGCTTGTATCGGAGGCTCAAAC
GCAAGTAACTACTGTGCACAGGGCTACACAGGTCCAGGTTCCGATACATG
TCGTATAGAGGTCGTCTGCTCTCGTTGCAACATCGAGTGTAACGAAGTCT
CCGGAAGCATTATCTTAGACGAATCAACGGTACCAGTTTGCGAGGTAGTC
CCTACAGGGGTGAACGAAAAAAAGGCAGGAATGACCGTCGAGACGCTCGA
ACTCTTACAAGGGTATTACCGAACTTCAAACCAGAGCCAGGATGTACGAG
AGTGTTATAGATCGGAGGCTTGTATCGGAGGCTCAAACGCAAGTAACTAC
TGTGCACAGGGCTACACAGGTCCA
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