mRNA_H-elongata_contig124845.1869.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.000e-31 Identity = 59/134 (44.03%), Postives = 86/134 (64.18%), Query Frame = 2
Query: 2 EGPAVMSLGHAEYFAEVSFRKNSLFCVKGKYGFDNGSEGSDTCRIEVVCSRCNIECNEVSGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
+G AV S+G + V+F N+L C G+Y +D +E D+CR E+ C+RC+ +C+ + S+ + +ST+PVC + G +G TV TL+L +GYYRTS +SQ V ECY + AC GG++ NYCA GY GP
Sbjct: 253 DGTAVFSIGVVQQALNVTFASNTLNCPLGEYAYDKEAE-DDSCRFELACARCSADCDAIPSSVTMADSTIPVCLELMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTGACAGGTDPENYCADGYEGP 385
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.720e-30 Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 2
Query: 2 EGPAVMSLGHAEYFAEVSFRKNSLFCVKGKYGFDNGSEGSDTCRIEVVCSRCNIECNEVSGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
+G AV S+G + V+F N+L C G+ +D +E D+CR E+ C+RC+ +C+ + S+ + +ST+PVC G +G TV TL+L +GYYRTS +SQ V ECY + AC GG++ NYCA GY GP
Sbjct: 494 DGTAVFSMGVVQKALNVAFASNTLNCPPGENAYDKEAE-DDSCRFELACARCSADCDAIPSSVTMADSTIPVCVESMEGTKASSSGTTVATLDLQEGYYRTSAESQVVVECYLTSACAGGTDPKNYCADGYEGP 626
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.070e-29 Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 2
Query: 5 GPAVMSLGHAEYFAEVSFRKNSLFCVKGKYGFD---NGSEGSDTCRIEVVCSRCNIECNEVSGSIIL-DESTVPVCEVVPTGVNEK-KAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTG 400
G AV SLG A + +F N+ +C G+YG++ E S TCR VVCS C C + GS+++ +++ VP+CE TGV+ G+T+ L LL+GYYRTS +SQ+V +CY+ EACIGG++ S YC +GY G
Sbjct: 518 GLAVQSLGIAGNITDTTFESNTYYCSSGQYGYEYEIGEDEVSGTCRFGVVCSSCAASCEDNPGSVVVVNDAHVPICETAMTGVDTSGDGGVTLPELNLLRGYYRTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRG 654
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 119 bits (297), Expect = 5.830e-29 Identity = 62/132 (46.97%), Postives = 85/132 (64.39%), Query Frame = 2
Query: 32 AEYFAEVSFRKNSLFCVKGKYGFDN---GSEGSDTCRIEVVCSRC-NIECNEV----SGSIILDESTVPVCEVVPTGVNEK-KAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTG 400
AE F +V+F +N+ +C G+YG D E +DTCR+EVVCSRC + C + +G +L+++ VP C+ V GVN AG T++TL+L GYYRTS +S + EC+R EAC+GGS A YCA GY G
Sbjct: 300 AENFTDVTFAENTFYCAPGQYGSDAHFLDEEVADTCRLEVVCSRCVSSPCEDDDMLDNGISVLEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQG 431
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.810e-23 Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 2
Query: 65 NSLFCVKGKYGFDNGSE-----GSDTCRIEVVCSRCNIECNEV--SGSIILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
N +C +G++G + + G+D CR VCSRC EC+ S + ++D T+P CE P G + G T+ TLE+L G+YR+S S D+REC+ +AC GGS YCA+GY GP
Sbjct: 514 NDFYCEEGEFGTETLIDKDLFGGADQCRFGRVCSRCASECDSELESAAELVDAETLPTCEEAPEGSRTTRRGATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGP 633
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.950e-22 Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 2
Query: 65 NSLFCVKGKYGFDNGSE-----GSDTCRIEVVCSRCNIEC-NEVSGSI-ILDESTVPVCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
N +C +G++G + + G+D CR VCSRC EC +E+ + ++D T+P CE P G + G T+ TLE+L G+YR+S S D+REC+ +AC GGS YC++GY GP
Sbjct: 490 NDFYCEEGEFGTETLIDKDLFGGADQCRFRRVCSRCASECGSELERTAELVDADTLPTCETAPEGSRTTRRGATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGP 609
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7S4MJB6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MJB6_9EUKA) HSP 1 Score: 66.2 bits (160), Expect = 4.930e-10 Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 2
Query: 218 CEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNA-SNYCAQGYTGP 403
C P G + G ++ETL L G++RT NQS+DVREC+ S+ACIG NA S+ CA G+ GP
Sbjct: 139 CTACPHGADCSTQGTSLETLPLKAGFWRTGNQSEDVRECFTSDACIGSCNATSSVCADGHLGP 201
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.060e-9 Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 2
Query: 218 CEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGYTGP 403
C + G+ G+T+ETL L G++RTSN S D+REC + AC+GG N++N C +G+TGP
Sbjct: 181 CVEIVEGIRNDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGG-NSTNMCREGHTGP 241
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7R9U892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U892_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.370e-8 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 2
Query: 215 VCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGY 394
VCE GV G + L LL G++R+ QS DVREC +AC+GG+NA +YCA G+
Sbjct: 13 VCETCGEGVVCNDFGNKLTNLTLLPGFWRSGRQSTDVRECIERDACVGGTNADDYCAPGH 72
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Match: A0A7R9U1A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A3_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.120e-8 Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query: 215 VCEVVPTGVNEKKAGMTVETLELLQGYYRTSNQSQDVRECYRSEACIGGSNASNYCAQGY 394
VC G+ G + TL+L +GY+R+ S D+R+C +AC+GG++ASNYCA+G+
Sbjct: 13 VCVFCGEGLTCNSFGNVLPTLQLQRGYWRSGPMSGDIRDCISRDACVGGTDASNYCAEGH 72 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124845.1869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig124845.1869.1 >prot_H-elongata_contig124845.1869.1 ID=prot_H-elongata_contig124845.1869.1|Name=mRNA_H-elongata_contig124845.1869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp MSLGHAEYFAEVSFRKNSLFCVKGKYGFDNGSEGSDTCRIEVVCSRCNIEback to top mRNA from alignment at H-elongata_contig124845:640..1502- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig124845.1869.1 ID=mRNA_H-elongata_contig124845.1869.1|Name=mRNA_H-elongata_contig124845.1869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=863bp|location=Sequence derived from alignment at H-elongata_contig124845:640..1502- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig124845:640..1502- >mRNA_H-elongata_contig124845.1869.1 ID=mRNA_H-elongata_contig124845.1869.1|Name=mRNA_H-elongata_contig124845.1869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig124845:640..1502- (Himanthalia elongata Himel1 dioecious)back to top |