mRNA_H-elongata_contig124546.1846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig124546.1846.1
Unique NamemRNA_H-elongata_contig124546.1846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: D7G6T8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T8_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 2.740e-154
Identity = 244/369 (66.12%), Postives = 285/369 (77.24%), Query Frame = 1 
Query:    1 IKACRLPAPKIGPGRIGFVDRAKLLDADALREEVASRYNPTIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQDLERPLKALAQAIVDASGADVTL--APTLVAEVALRRLKA-----AGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAKFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFATREARAARGGVTAFVAALRS-------GEVTGE-PEDLEERLWRAMKGAVALCEGRQGRNPGLDEVVDELGVSERDFERAAERAGPVCPVAVDPFSYKVVLRSSFFSDALAA 1062
            IK  RLP  K+GPG  GFVDR KLLDADALR EV SRYNPT++V+GERGSGKTVAVRLAL+   SVVHVKLW +D+ RPL ALAQAI+D S   VT   +  LV E ALR +K       G+  PIVV+ELDKRC+   L+GVLLA KRWGDDENLAKFVVEAPSARIARGL ISLSDLRVEG+K+ PLA  EA QVA GCVP+ A+R+WKGGR EDLA Y+V+KVG GMLDLVRVGFAAR+ARDPLALH++V+ FATRE+RAARGGV AF+ +LR+       G V G   ED+E RLWRA++GA A  +GR G+ PGLDEV++ +GVSER FE A    GP  P++VDPFSYKV +RS FF +AL A
Sbjct:   60 IKTSRLPPAKVGPGNPGFVDRPKLLDADALRREVQSRYNPTLLVHGERGSGKTVAVRLALHSSESVVHVKLWGKDVSRPLFALAQAIIDTSSVQVTAPGSAPLVVESALRNIKGRGWKPGGASVPIVVVELDKRCSDTDLLGVLLACKRWGDDENLAKFVVEAPSARIARGLPISLSDLRVEGVKMRPLAPSEAQQVAVGCVPIAASRNWKGGRQEDLAKYIVSKVGLGMLDLVRVGFAARNARDPLALHASVNRFATRESRAARGGVKAFLVSLRTELERKGGGSVHGPGEEDIERRLWRAIEGAAARADGRGGKKPGLDEVLETIGVSERAFESAVRGVGPASPLSVDPFSYKVSIRSLFFRNALEA 428
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BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: A0A836CEX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.570e-13
Identity = 84/321 (26.17%), Postives = 137/321 (42.68%), Query Frame = 1 
Query:  109 RYNPTIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQ--DLERPLKALAQAI--VDASGADVTLAPTLVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAKFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFATREARAARGGVTAFVAALRSGEVTGEPEDLEERLWRAMKGAVALCEGRQGRNPGLDE-VVDELGVSERDFERAAERAGPVCPVAVDPFSYKVVLRSSFFSDAL 1056
            + NP+++VYG RG GKT  V  AL G   V+ +       DLE+ L+ L   +  +   G    L   L A +   ++       P+VVI++++R     L  +LLAAK+ G  E LA F+    ++R A GLTI +   RV G + P  ++ EAL      +P              +A +VV ++G   +DLV +    R           V+++     + AR  +  FVA  +  E   +   +    +R +  A +      G     D+   D  G  E +    A         A+DPF + + ++S F   A+
Sbjct:   44 KQNPSLLVYGARGVGKTSLVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQI--VHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLP----------PFPGMAEFVVQQIGTRAMDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVA--FFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLA--LAKYHAFAIDPFDHTISMQSHFMQTAI 348
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BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: A0A835YHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.540e-12
Identity = 97/341 (28.45%), Postives = 138/341 (40.47%), Query Frame = 1 
Query:   67 KLLDADALREEVAS-------RYNPTIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQ--DLERPLKALA--QAIVDASGADVTLAPTLVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAKFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFATREARAARGGVTAFVAALRSGEVTGEPEDLE--ERLWRAMKGAVALCEGRQGRNPGLDEVV--DELGVSERDFERAAERAGPVCPV---AVDPFSYKVVLRS 1035
            KLL  D   E  A+         NP+++VYG RG GKT  V  AL GI  V+ +       DLE+ L+ L    A +   G    L   L A   L   +      P+VVI +D+R     L  +LLAA++ G  E LA F+    + R A GL I LS  +V G + P   + EAL      +P              +A + V ++G   +DLV +  A R         + V +        AR  +  FV   +  +   E   L   E+L  A  G  AL      R   LD+ V  D        FE+ A     +       VDPF + + ++S
Sbjct:   82 KLLQRDCFAEFKATVNLTRADDQNPSLLVYGARGGGKTSIVEAALQGIAGVLAMSYNGDGTDLEQRLEQLLLKPAGLPGHGPKADLGDRLRA--ILTFYQKVYDRRPVVVIHIDERTAPATLSKLLLAAEQLGFQEKLATFIFVVSAYRSALGLPIGLSQTQVLGYRAPDFTEDEALAYLAKHLP----------SCPGMAEFAVQQIGTRAMDLVELCSACRGVESETECRARVAALRAMRIGDARFALRGFVGIAKKNKAFEEKAGLAFFEKLLAAHGGDAALA-----RACVLDDDVLTDYHAAVAFGFEKPALLLSALAEYHAFVVDPFYHTISMQS 405
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BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: A0A1E7F6C6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6C6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.720e-10
Identity = 66/235 (28.09%), Postives = 116/235 (49.36%), Query Frame = 1 
Query:  121 TIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQDLERPLKALAQAIVDASGADVTLAPTLVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAK-----FVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSAR--DPLALHSTVDSFATREARAARGGVTAFVAAL 804
            T+++YG+RGSGKT  +R AL G   V+ +++  +  +   K L    ++   + V L  T    V +  + AA  + PI+V+ +D RC    L  VL+  K +  + +  +     F+V+   +R A   + ++  LRV G++V    + EAL  A   +P  + +D +  R  ++AM VV K  C +  L RV  A R+    D   + +T++    +E + A  G  +F  +L
Sbjct:   73 TVLLYGQRGSGKTSFIRYALKGRRGVLSIQITKKTHDEASKEL----IEKMSSQVDLLGTQQDLVFMEDVFAACRVPPIIVVTMDARCKGEVLEAVLILCKSFSYENSFRRGKQPRFLVDISFSRAAIDASSNIEVLRVVGIQVGNFPRDEALLYATERMPA-SLKDRR--RRHEIAMSVVEKFDCNVYTLQRVCKALRNGHPTDVSTVAATIERELRKEQQWAARGWYSFCCSL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6T8_ECTSI2.740e-15466.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEX4_9STRA4.570e-1326.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHU7_9STRA3.540e-1228.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7F6C6_9STRA3.720e-1028.09Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124546contigH-elongata_contig124546:124..1931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_012290.1
Hectar predicted targeting categoryother localisation
Exons2
Model size1062
Cds size1062
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.494292-CDS-H-elongata_contig124546:123..6511622929734.494292-CDS-H-elongata_contig124546:123..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124546 124..651 -
1691679137.39942-CDS-H-elongata_contig124546:123..6511691679137.39942-CDS-H-elongata_contig124546:123..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124546 124..651 -
1622929734.5146346-CDS-H-elongata_contig124546:1397..19311622929734.5146346-CDS-H-elongata_contig124546:1397..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124546 1398..1931 -
1691679137.4101117-CDS-H-elongata_contig124546:1397..19311691679137.4101117-CDS-H-elongata_contig124546:1397..1931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig124546 1398..1931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124546.1846.1prot_H-elongata_contig124546.1846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig124546 124..1931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig124546.1846.1

>prot_H-elongata_contig124546.1846.1 ID=prot_H-elongata_contig124546.1846.1|Name=mRNA_H-elongata_contig124546.1846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp
IKACRLPAPKIGPGRIGFVDRAKLLDADALREEVASRYNPTIVVYGERGS
GKTVAVRLALYGICSVVHVKLWAQDLERPLKALAQAIVDASGADVTLAPT
LVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLA
KFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAA
RDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFA
TREARAARGGVTAFVAALRSGEVTGEPEDLEERLWRAMKGAVALCEGRQG
RNPGLDEVVDELGVSERDFERAAERAGPVCPVAVDPFSYKVVLRSSFFSD
ALAA
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mRNA from alignment at H-elongata_contig124546:124..1931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig124546.1846.1 ID=mRNA_H-elongata_contig124546.1846.1|Name=mRNA_H-elongata_contig124546.1846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1808bp|location=Sequence derived from alignment at H-elongata_contig124546:124..1931- (Himanthalia elongata Himel1 dioecious)
ATTAAGGCTTGCCGTCTGCCGGCCCCAAAAATTGGGCCAGGACGAATCGG
TTTTGTCGACCGCGCCAAACTCCTTGACGCCGATGCTTTGAGGGAAGAGG
TCGCGTCGCGGTACAACCCCACAATAGTAGTGTATGGCGAGAGAGGCTCG
GGAAAAACGGTCGCTGTCCGACTCGCTCTTTATGGGATATGCTCGGTGGT
TCATGTCAAGCTTTGGGCTCAAGATCTGGAACGCCCGCTTAAGGCGTTGG
CGCAAGCAATTGTCGATGCCAGCGGGGCGGACGTGACTTTAGCACCAACA
CTTGTGGCCGAGGTGGCATTAAGGCGCCTCAAAGCCGCTGGTTCATTGAC
TCCGATTGTGGTGATCGAGCTCGACAAAAGATGCACGGCTCCGCAGCTGA
TGGGCGTGTTGTTGGCGGCCAAGCGATGGGGTGATGACGAGAACCTCGCC
AAGTTCGTTGTAGAGGCACCGTCCGCACGCATCGCCCGGGGCTTGACTAT
ATCGTTGTCGGACTTGAGAGTGGAAGGGTTGAAGGTGAGTAAGAGTGGAA
GGGATAAAGGTGGATAAGAGTAGAAGGGATGAAGGTGGGTGAGAGTGGAA
GGGATTAAGGTGAGTGAGAGTGGAAGGGGTGAAGGTGGGTAAATATGTCA
TGACCTCATACGCCATCGTCTCTGATGGCGTCATTACGTCATCGCCTCGA
CGTCTCATCGTCTCGATTGCATCAACTCTGCTGGCATCTTAAGATTTCTA
CAATTCTGCAGTTGATAATTAATGCGAGATGAGTACCGGTAGATATGGTT
GCGTCAGGTCATTTTCGTACCACTGACACGATGTTGAAATACGCCTAGCG
CCACCGACGATTATGTGCTTTGGCCAGTTTAGTAGCGCTGGCGTGCGCCG
TCGTCTACATCCGGTCACCCACGGTTGTCCGCACATTCCTTTTTTACGAT
GTTCAGCTTTCGGCGAGATCGATTGCGCTGACCAAGATACTTCGGTAGCC
TATGAAGACATCCATTGCAGACTCAACCCACCTCGTAATATCGCTGTACC
CGTAATTTTCGGGTACAACGATGCGCAAGAGTGGCAATCTAGTATGATTC
CACTAGGAAGGACACCCCAGCGCCGTTGTTATGTCAGTACTCGACGTCAG
CCTAATCTTTCTTTGTTATGGGTTGGGGTTGGGGTTGGGGTTGGGCCTAC
TCACGCACGCCCAGTCTGATTTGAAAGCCGTAAACACCATGTGAATCGTA
CACAATGCCTTACTCTTGTTATCCGTGTAGGTGCCCCCTCTCGCGAAGAA
AGAAGCCTTGCAAGTGGCTCGAGGGTGTGTACCTTTAGAAGCTGCGCGAG
ATTGGAAAGGTGGGCGCCTCGAAGATCTTGCCATGTACGTTGTGGCCAAG
GTTGGCTGTGGGATGCTGGACCTTGTGCGTGTCGGGTTCGCCGCCCGGAG
TGCAAGAGACCCACTTGCCCTACATTCCACCGTAGATTCCTTCGCTACCC
GCGAAGCGCGTGCTGCCAGGGGCGGCGTCACAGCGTTTGTCGCGGCCCTG
AGGTCAGGGGAAGTTACTGGCGAGCCGGAAGATTTGGAGGAACGCCTGTG
GAGGGCAATGAAGGGGGCTGTTGCCTTGTGCGAAGGGCGTCAGGGAAGAA
ATCCGGGGCTTGACGAAGTAGTGGACGAACTCGGGGTCTCAGAAAGGGAC
TTCGAACGCGCTGCTGAACGGGCAGGACCGGTTTGTCCCGTGGCCGTGGA
CCCTTTTTCGTACAAGGTTGTCTTGCGTTCTTCCTTCTTTAGTGACGCTC
TAGCAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig124546:124..1931-

>mRNA_H-elongata_contig124546.1846.1 ID=mRNA_H-elongata_contig124546.1846.1|Name=mRNA_H-elongata_contig124546.1846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig124546:124..1931- (Himanthalia elongata Himel1 dioecious)
ATTAAGGCTTGCCGTCTGCCGGCCCCAAAAATTGGGCCAGGACGAATCGG
TTTTGTCGACCGCGCCAAACTCCTTGACGCCGATGCTTTGAGGGAAGAGG
TCGCGTCGCGGTACAACCCCACAATAGTAGTGTATGGCGAGAGAGGCTCG
GGAAAAACGGTCGCTGTCCGACTCGCTCTTTATGGGATATGCTCGGTGGT
TCATGTCAAGCTTTGGGCTCAAGATCTGGAACGCCCGCTTAAGGCGTTGG
CGCAAGCAATTGTCGATGCCAGCGGGGCGGACGTGACTTTAGCACCAACA
CTTGTGGCCGAGGTGGCATTAAGGCGCCTCAAAGCCGCTGGTTCATTGAC
TCCGATTGTGGTGATCGAGCTCGACAAAAGATGCACGGCTCCGCAGCTGA
TGGGCGTGTTGTTGGCGGCCAAGCGATGGGGTGATGACGAGAACCTCGCC
AAGTTCGTTGTAGAGGCACCGTCCGCACGCATCGCCCGGGGCTTGACTAT
ATCGTTGTCGGACTTGAGAGTGGAAGGGTTGAAGATTAAGGCTTGCCGTC
TGCCGGCCCCAAAAATTGGGCCAGGACGAATCGGTTTTGTCGACCGCGCC
AAACTCCTTGACGCCGATGCTTTGAGGGAAGAGGTCGCGTCGCGGTACAA
CCCCACAATAGTAGTGTATGGCGAGAGAGGCTCGGGAAAAACGGTCGCTG
TCCGACTCGCTCTTTATGGGATATGCTCGGTGGTTCATGTCAAGCTTTGG
GCTCAAGATCTGGAACGCCCGCTTAAGGCGTTGGCGCAAGCAATTGTCGA
TGCCAGCGGGGCGGACGTGACTTTAGCACCAACACTTGTGGCCGAGGTGG
CATTAAGGCGCCTCAAAGCCGCTGGTTCATTGACTCCGATTGTGGTGATC
GAGCTCGACAAAAGATGCACGGCTCCGCAGCTGATGGGCGTGTTGTTGGC
GGCCAAGCGATGGGGTGATGACGAGAACCTCGCCAAGTTCGTTGTAGAGG
CACCGTCCGCACGCATCGCCCGGGGCTTGACTATATCGTTGTCGGACTTG
AGAGTGGAAGGGTTGAAGGTGCCCCCTCTCGCGAAGAAAGAAGCCTTGCA
AGTGGCTCGAGGGTGTGTACCTTTAGAAGCTGCGCGAGATTGGAAAGGTG
GGCGCCTCGAAGATCTTGCCATGTACGTTGTGGCCAAGGTTGGCTGTGGG
ATGCTGGACCTTGTGCGTGTCGGGTTCGCCGCCCGGAGTGCAAGAGACCC
ACTTGCCCTACATTCCACCGTAGATTCCTTCGCTACCCGCGAAGCGCGTG
CTGCCAGGGGCGGCGTCACAGCGTTTGTCGCGGCCCTGAGGTCAGGGGAA
GTTACTGGCGAGCCGGAAGATTTGGAGGAACGCCTGTGGAGGGCAATGAA
GGGGGCTGTTGCCTTGTGCGAAGGGCGTCAGGGAAGAAATCCGGGGCTTG
ACGAAGTAGTGGACGAACTCGGGGTCTCAGAAAGGGACTTCGAACGCGCT
GCTGAACGGGCAGGACCGGTTTGTCCCGTGGCCGTGGACCCTTTTTCGTA
CAAGGTTGTCTTGCGTTCTTCCTTCTTTAGTGACGCTCTAGCAGCAGTGC
CCCCTCTCGCGAAGAAAGAAGCCTTGCAAGTGGCTCGAGGGTGTGTACCT
TTAGAAGCTGCGCGAGATTGGAAAGGTGGGCGCCTCGAAGATCTTGCCAT
GTACGTTGTGGCCAAGGTTGGCTGTGGGATGCTGGACCTTGTGCGTGTCG
GGTTCGCCGCCCGGAGTGCAAGAGACCCACTTGCCCTACATTCCACCGTA
GATTCCTTCGCTACCCGCGAAGCGCGTGCTGCCAGGGGCGGCGTCACAGC
GTTTGTCGCGGCCCTGAGGTCAGGGGAAGTTACTGGCGAGCCGGAAGATT
TGGAGGAACGCCTGTGGAGGGCAATGAAGGGGGCTGTTGCCTTGTGCGAA
GGGCGTCAGGGAAGAAATCCGGGGCTTGACGAAGTAGTGGACGAACTCGG
GGTCTCAGAAAGGGACTTCGAACGCGCTGCTGAACGGGCAGGACCGGTTT
GTCCCGTGGCCGTGGACCCTTTTTCGTACAAGGTTGTCTTGCGTTCTTCC
TTCTTTAGTGACGCTCTAGCAGCA
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