prot_H-elongata_contig124546.1846.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig124546.1846.1
Unique Nameprot_H-elongata_contig124546.1846.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length354
Homology
BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: D7G6T8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T8_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 2.740e-154
Identity = 244/369 (66.12%), Postives = 285/369 (77.24%), Query Frame = 0
Query:    1 IKACRLPAPKIGPGRIGFVDRAKLLDADALREEVASRYNPTIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQDLERPLKALAQAIVDASGADVTL--APTLVAEVALRRLKA-----AGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAKFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFATREARAARGGVTAFVAALRS-------GEVTGE-PEDLEERLWRAMKGAVALCEGRQGRNPGLDEVVDELGVSERDFERAAERAGPVCPVAVDPFSYKVVLRSSFFSDALAA 354
            IK  RLP  K+GPG  GFVDR KLLDADALR EV SRYNPT++V+GERGSGKTVAVRLAL+   SVVHVKLW +D+ RPL ALAQAI+D S   VT   +  LV E ALR +K       G+  PIVV+ELDKRC+   L+GVLLA KRWGDDENLAKFVVEAPSARIARGL ISLSDLRVEG+K+ PLA  EA QVA GCVP+ A+R+WKGGR EDLA Y+V+KVG GMLDLVRVGFAAR+ARDPLALH++V+ FATRE+RAARGGV AF+ +LR+       G V G   ED+E RLWRA++GA A  +GR G+ PGLDEV++ +GVSER FE A    GP  P++VDPFSYKV +RS FF +AL A
Sbjct:   60 IKTSRLPPAKVGPGNPGFVDRPKLLDADALRREVQSRYNPTLLVHGERGSGKTVAVRLALHSSESVVHVKLWGKDVSRPLFALAQAIIDTSSVQVTAPGSAPLVVESALRNIKGRGWKPGGASVPIVVVELDKRCSDTDLLGVLLACKRWGDDENLAKFVVEAPSARIARGLPISLSDLRVEGVKMRPLAPSEAQQVAVGCVPIAASRNWKGGRQEDLAKYIVSKVGLGMLDLVRVGFAARNARDPLALHASVNRFATRESRAARGGVKAFLVSLRTELERKGGGSVHGPGEEDIERRLWRAIEGAAARADGRGGKKPGLDEVLETIGVSERAFESAVRGVGPASPLSVDPFSYKVSIRSLFFRNALEA 428          
BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: A0A836CEX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.570e-13
Identity = 84/321 (26.17%), Postives = 137/321 (42.68%), Query Frame = 0
Query:   37 RYNPTIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQ--DLERPLKALAQAI--VDASGADVTLAPTLVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAKFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFATREARAARGGVTAFVAALRSGEVTGEPEDLEERLWRAMKGAVALCEGRQGRNPGLDE-VVDELGVSERDFERAAERAGPVCPVAVDPFSYKVVLRSSFFSDAL 352
            + NP+++VYG RG GKT  V  AL G   V+ +       DLE+ L+ L   +  +   G    L   L A +   ++       P+VVI++++R     L  +LLAAK+ G  E LA F+    ++R A GLTI +   RV G + P  ++ EAL      +P              +A +VV ++G   +DLV +    R           V+++     + AR  +  FVA  +  E   +   +    +R +  A +      G     D+   D  G  E +    A         A+DPF + + ++S F   A+
Sbjct:   44 KQNPSLLVYGARGVGKTSLVEAALQGTAGVLGMSYNGDGTDLEQRLEQLLLKLAGLPEHGPKADLGDRLRAILTFYQI--VHKRRPVVVIDINERTGPATLSKLLLAAKQLGFQEKLATFIFVVSASRSALGLTIGIRQSRVRGYRAPDFSEDEALAYLAKHLP----------PFPGMAEFVVQQIGTRAMDLVELCSECRGVELEPECRERVEAYREACIKDARFALRGFVAIAKKNEAFSKEASVA--FFRQLLAADSDDAALAGTCVLDDDYAADAFGFEEPELLLLA--LAKYHAFAIDPFDHTISMQSHFMQTAI 348          
BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: A0A835YHU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.540e-12
Identity = 97/341 (28.45%), Postives = 138/341 (40.47%), Query Frame = 0
Query:   23 KLLDADALREEVAS-------RYNPTIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQ--DLERPLKALA--QAIVDASGADVTLAPTLVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAKFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFATREARAARGGVTAFVAALRSGEVTGEPEDLE--ERLWRAMKGAVALCEGRQGRNPGLDEVV--DELGVSERDFERAAERAGPVCPV---AVDPFSYKVVLRS 345
            KLL  D   E  A+         NP+++VYG RG GKT  V  AL GI  V+ +       DLE+ L+ L    A +   G    L   L A   L   +      P+VVI +D+R     L  +LLAA++ G  E LA F+    + R A GL I LS  +V G + P   + EAL      +P              +A + V ++G   +DLV +  A R         + V +        AR  +  FV   +  +   E   L   E+L  A  G  AL      R   LD+ V  D        FE+ A     +       VDPF + + ++S
Sbjct:   82 KLLQRDCFAEFKATVNLTRADDQNPSLLVYGARGGGKTSIVEAALQGIAGVLAMSYNGDGTDLEQRLEQLLLKPAGLPGHGPKADLGDRLRA--ILTFYQKVYDRRPVVVIHIDERTAPATLSKLLLAAEQLGFQEKLATFIFVVSAYRSALGLPIGLSQTQVLGYRAPDFTEDEALAYLAKHLP----------SCPGMAEFAVQQIGTRAMDLVELCSACRGVESETECRARVAALRAMRIGDARFALRGFVGIAKKNKAFEEKAGLAFFEKLLAAHGGDAALA-----RACVLDDDVLTDYHAAVAFGFEKPALLLSALAEYHAFVVDPFYHTISMQS 405          
BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Match: A0A1E7F6C6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6C6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.720e-10
Identity = 66/235 (28.09%), Postives = 116/235 (49.36%), Query Frame = 0
Query:   41 TIVVYGERGSGKTVAVRLALYGICSVVHVKLWAQDLERPLKALAQAIVDASGADVTLAPTLVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLAK-----FVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAARDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSAR--DPLALHSTVDSFATREARAARGGVTAFVAAL 268
            T+++YG+RGSGKT  +R AL G   V+ +++  +  +   K L    ++   + V L  T    V +  + AA  + PI+V+ +D RC    L  VL+  K +  + +  +     F+V+   +R A   + ++  LRV G++V    + EAL  A   +P  + +D +  R  ++AM VV K  C +  L RV  A R+    D   + +T++    +E + A  G  +F  +L
Sbjct:   73 TVLLYGQRGSGKTSFIRYALKGRRGVLSIQITKKTHDEASKEL----IEKMSSQVDLLGTQQDLVFMEDVFAACRVPPIIVVTMDARCKGEVLEAVLILCKSFSYENSFRRGKQPRFLVDISFSRAAIDASSNIEVLRVVGIQVGNFPRDEALLYATERMPA-SLKDRR--RRHEIAMSVVEKFDCNVYTLQRVCKALRNGHPTDVSTVAATIERELRKEQQWAARGWYSFCCSL 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig124546.1846.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6T8_ECTSI2.740e-15466.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEX4_9STRA4.570e-1326.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHU7_9STRA3.540e-1228.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7F6C6_9STRA3.720e-1028.09Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig124546contigH-elongata_contig124546:124..1931 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig124546.1846.1mRNA_H-elongata_contig124546.1846.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig124546 124..1931 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig124546.1846.1 ID=prot_H-elongata_contig124546.1846.1|Name=mRNA_H-elongata_contig124546.1846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp
IKACRLPAPKIGPGRIGFVDRAKLLDADALREEVASRYNPTIVVYGERGS
GKTVAVRLALYGICSVVHVKLWAQDLERPLKALAQAIVDASGADVTLAPT
LVAEVALRRLKAAGSLTPIVVIELDKRCTAPQLMGVLLAAKRWGDDENLA
KFVVEAPSARIARGLTISLSDLRVEGLKVPPLAKKEALQVARGCVPLEAA
RDWKGGRLEDLAMYVVAKVGCGMLDLVRVGFAARSARDPLALHSTVDSFA
TREARAARGGVTAFVAALRSGEVTGEPEDLEERLWRAMKGAVALCEGRQG
RNPGLDEVVDELGVSERDFERAAERAGPVCPVAVDPFSYKVVLRSSFFSD
ALAA
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