prot_H-elongata_contig122900.1743.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig122900.1743.1
Unique Nameprot_H-elongata_contig122900.1743.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length199
Homology
[Close]
BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.010e-43
Identity = 106/208 (50.96%), Postives = 125/208 (60.10%), Query Frame = 0 
Query:    1 DKTICAVVVGLSINLNVLDVAEKRIKSRFSFQQVRLPPQDFETLAAILKDALTIPEGDDGHNASNGAPSPPSLAAHTSAPRPTRVPAAYARRFNAVTRQTLGGSEGSSSAVVSRRSL---------EVRSAMSDLKALATSGRSIGWFLRLASTAVALLGVAGTGGGGMRVGEPGLTRQALVRAAEMLAPDPHSQALRSLSVTQVCLL 199
            DKTICA VVGLS+NLNVLDVAEKR+KSRFSF+Q+  P Q  +T+ +IL  ALT+P G+D                         V AA+AR FNAVTRQTLGG++   ++                   SA+ DLK LA SGRS+GW LRLASTAV LL          R  E G+TR+AL RA EMLAPD HS ALRSLSVTQ  +L
Sbjct:  207 DKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQALDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXXG---------VSAAFARDFNAVTRQTLGGAKNGVTSXXXXXXXXXXXXXXQRSASSALPDLKDLAASGRSVGWLLRLASTAVGLL----------RDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVL 395
[Close]
BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.800e-41
Identity = 105/211 (49.76%), Postives = 124/211 (58.77%), Query Frame = 0 
Query:    1 DKTICAVVVGLSINLNVLDVAEKRIKSRFSFQQVRLPPQDFETLAAILKDALTIPEGDDGHNASNGAPSPPSLAAHTSAPRPTRVPAAYARRFNAVTRQTLGGSEGSSSAVV------------SRRSLEVRSAMSDLKALATSGRSIGWFLRLASTAVALLGVAGTGGGGMRVGEPGLTRQALVRAAEMLAPDPHSQALRSLSVTQVCLL 199
            DKTICA VVGLS+NLNVLDVAEKR+KSRFSF+Q+  P QD +T+ +IL  ALT+P G +                              AR FNAVTRQTLGG++                   ++RS    SA+ DLK LA SGRS+GWFLRLASTAV LL          R  E G+TR+AL RA EMLAPD H+ ALRSLSVTQ  +L
Sbjct:  245 DKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPGQDLDTIVSILAGALTLPGGSNXXXXXXXXXXXXXX-------XXXXXXXXXAREFNAVTRQTLGGAKNGXXXXXXXXXXXXXXXXXAQRSAS--SALPDLKELAASGRSVGWFLRLASTAVGLL----------RDDEKGVTRRALARAGEMLAPDSHALALRSLSVTQALVL 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0P2_ECTSI2.010e-4350.96Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
A0A6H5JJU9_9PHAE3.800e-4149.76Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016527Origin recognition complex subunit 4PANTHERPTHR12087ORIGIN RECOGNITION COMPLEX SUBUNIT 4coord: 2..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122900contigH-elongata_contig122900:97..1199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122900.1743.1mRNA_H-elongata_contig122900.1743.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig122900 97..1199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig122900.1743.1 ID=prot_H-elongata_contig122900.1743.1|Name=mRNA_H-elongata_contig122900.1743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
DKTICAVVVGLSINLNVLDVAEKRIKSRFSFQQVRLPPQDFETLAAILKD
ALTIPEGDDGHNASNGAPSPPSLAAHTSAPRPTRVPAAYARRFNAVTRQT
LGGSEGSSSAVVSRRSLEVRSAMSDLKALATSGRSIGWFLRLASTAVALL
GVAGTGGGGMRVGEPGLTRQALVRAAEMLAPDPHSQALRSLSVTQVCLL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016527ORC4