mRNA_H-elongata_contig122900.1743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig122900.1743.1
Unique Name	mRNA_H-elongata_contig122900.1743.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.010e-43
Identity = 106/208 (50.96%), Postives = 125/208 (60.10%), Query Frame = 1

Query:    1 DKTICAVVVGLSINLNVLDVAEKRIKSRFSFQQVRLPPQDFETLAAILKDALTIPEGDDGHNASNGAPSPPSLAAHTSAPRPTRVPAAYARRFNAVTRQTLGGSEGSSSAVVSRRSL---------EVRSAMSDLKALATSGRSIGWFLRLASTAVALLGVAGTGGGGMRVGEPGLTRQALVRAAEMLAPDPHSQALRSLSVTQVCLL 597
            DKTICA VVGLS+NLNVLDVAEKR+KSRFSF+Q+  P Q  +T+ +IL  ALT+P G+D                         V AA+AR FNAVTRQTLGG++   ++                   SA+ DLK LA SGRS+GW LRLASTAV LL          R  E G+TR+AL RA EMLAPD HS ALRSLSVTQ  +L
Sbjct:  207 DKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPRQALDTIVSILAGALTLPGGNDXXXXXXXXXXXXXXXG---------VSAAFARDFNAVTRQTLGGAKNGVTSXXXXXXXXXXXXXXQRSASSALPDLKDLAASGRSVGWLLRLASTAVGLL----------RDDEKGVTRRALARAGEMLAPDSHSLALRSLSVTQALVL 395

[Close]

BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.800e-41
Identity = 105/211 (49.76%), Postives = 124/211 (58.77%), Query Frame = 1

Query:    1 DKTICAVVVGLSINLNVLDVAEKRIKSRFSFQQVRLPPQDFETLAAILKDALTIPEGDDGHNASNGAPSPPSLAAHTSAPRPTRVPAAYARRFNAVTRQTLGGSEGSSSAVV------------SRRSLEVRSAMSDLKALATSGRSIGWFLRLASTAVALLGVAGTGGGGMRVGEPGLTRQALVRAAEMLAPDPHSQALRSLSVTQVCLL 597
            DKTICA VVGLS+NLNVLDVAEKR+KSRFSF+Q+  P QD +T+ +IL  ALT+P G +                              AR FNAVTRQTLGG++                   ++RS    SA+ DLK LA SGRS+GWFLRLASTAV LL          R  E G+TR+AL RA EMLAPD H+ ALRSLSVTQ  +L
Sbjct:  245 DKTICAAVVGLSVNLNVLDVAEKRVKSRFSFRQIGFPGQDLDTIVSILAGALTLPGGSNXXXXXXXXXXXXXX-------XXXXXXXXXAREFNAVTRQTLGGAKNGXXXXXXXXXXXXXXXXXAQRSAS--SALPDLKELAASGRSVGWFLRLASTAVGLL----------RDDEKGVTRRALARAGEMLAPDSHALALRSLSVTQALVL 436

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot

BLAST of mRNA_H-elongata_contig122900.1743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G0P2_ECTSI	2.010e-43	50.96	Origin recognition complex subunit 4 n=1 Tax=Ectoc...	[more]
A0A6H5JJU9_9PHAE	3.800e-41	49.76	Origin recognition complex subunit 4 n=1 Tax=Ectoc...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig122900	contig	H-elongata_contig122900:97..1199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	162.2
Seed ortholog evalue	2.6e-37
Seed eggNOG ortholog	2880.D7G0P2
Preferred name	ORC4
KEGG ko	ko:K02606
KEGG Pathway	ko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG Module	M00284
GOs	GO:0000082,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006267,GO:0006270,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030466,GO:0030554,GO:0031261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902292,GO:1902299,GO:1902315,GO:1902595,GO:1902597,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	DNA replication origin binding
EggNOG OGs	KOG2228@1,KOG2228@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03032
Hectar predicted targeting category	other localisation
Ec32 ortholog description	P-loop containing nucleoside triphosphate hydrolase
Ec32 ortholog	Ec-14_001730.1
Exons	2
Model size	597
Cds size	597
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929723.623785-CDS-H-elongata_contig122900:96..195	1622929723.623785-CDS-H-elongata_contig122900:96..195	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig122900 97..195 +
1691679133.3449187-CDS-H-elongata_contig122900:96..195	1691679133.3449187-CDS-H-elongata_contig122900:96..195	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig122900 97..195 +
1622929723.6390994-CDS-H-elongata_contig122900:701..1199	1622929723.6390994-CDS-H-elongata_contig122900:701..1199	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig122900 702..1199 +
1691679133.355769-CDS-H-elongata_contig122900:701..1199	1691679133.355769-CDS-H-elongata_contig122900:701..1199	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig122900 702..1199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig122900.1743.1	prot_H-elongata_contig122900.1743.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig122900 97..1199 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig122900:97..1199+
coding sequence from alignment at H-elongata_contig122900:97..1199+

protein sequence of mRNA_H-elongata_contig122900.1743.1

>prot_H-elongata_contig122900.1743.1 ID=prot_H-elongata_contig122900.1743.1|Name=mRNA_H-elongata_contig122900.1743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
DKTICAVVVGLSINLNVLDVAEKRIKSRFSFQQVRLPPQDFETLAAILKD
ALTIPEGDDGHNASNGAPSPPSLAAHTSAPRPTRVPAAYARRFNAVTRQT
LGGSEGSSSAVVSRRSLEVRSAMSDLKALATSGRSIGWFLRLASTAVALL
GVAGTGGGGMRVGEPGLTRQALVRAAEMLAPDPHSQALRSLSVTQVCLL

mRNA from alignment at H-elongata_contig122900:97..1199+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig122900.1743.1 ID=mRNA_H-elongata_contig122900.1743.1|Name=mRNA_H-elongata_contig122900.1743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-elongata_contig122900:97..1199+ (Himanthalia elongata Himel1 dioecious)
GACAAGACGATCTGCGCGGTGGTGGTCGGACTGTCGATCAACCTGAACGT
CTTGGACGTGGCGGAGAAGAGGATTAAGTCACGTTTCTCTTTCCAGCAGG
TGAATGGTGGGGTGAATGGTGGACGAATCGAACCGTCACGAGAGGAGAGA
GAAAGGAAATGCAACTGCGCTTGAACGTTGGATTTCGACGGTGACGGCGA
CAGGGGCGGAGGCGGAGGCGTTATGTCCTTGAGGAATGAAGATGGCGTAC
GCGGTCTGCTGCTGCTGCATGAAAGCAGGGGGGGGGAGGGATCGTATTTT
GGTGCAATATACCCTGGTATATATTAGTGAGAAGAGGAGGGGGGGGGGCA
CTCGTCCGACAGATGCGTGTGAACTCGATGGACGAGCCTCGAGACAATTG
CAACACTTGAACGCTGGCCCAGACAGCTGTCGGCGTACGTTTTGCGCTCC
AGAGTCGGGTTCTATGTGTGTGTGTGTGTTTTACGCGCGCCAATCTCGTT
GACCCGCCGAGGATTCACACACAAACACACATACATCCACAATTTATTTA
GGAAGCCGAATCCATTCGCCCTCCTCGATCGATTGCCTCAAACGTCCGTC
CCCAGGTGCGCCTCCCACCCCAGGACTTCGAAACCCTCGCCGCGATCCTC
AAGGATGCCCTTACGATCCCCGAGGGTGACGACGGGCACAACGCGAGCAA
CGGTGCCCCCTCCCCCCCCTCTCTTGCTGCTCATACTTCTGCCCCCCGTC
CGACCCGCGTCCCCGCCGCCTACGCCCGCCGGTTCAACGCGGTCACACGC
CAGACTCTCGGTGGCAGCGAGGGCTCATCAAGCGCTGTCGTCAGCAGGCG
ATCTTTGGAGGTACGGTCGGCGATGTCGGACTTGAAGGCCCTCGCGACTT
CCGGCCGTAGCATCGGGTGGTTCTTGAGGTTGGCGTCGACCGCCGTTGCG
CTTCTCGGCGTCGCTGGCACCGGTGGCGGAGGGATGAGAGTTGGGGAACC
AGGATTGACGCGGCAGGCGCTCGTGAGGGCGGCGGAGATGCTCGCTCCCG
ATCCGCACTCGCAAGCGCTTAGGAGCTTGTCGGTGACCCAGGTTTGTCTG
CTT

Coding sequence (CDS) from alignment at H-elongata_contig122900:97..1199+

>mRNA_H-elongata_contig122900.1743.1 ID=mRNA_H-elongata_contig122900.1743.1|Name=mRNA_H-elongata_contig122900.1743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig122900:97..1199+ (Himanthalia elongata Himel1 dioecious)
GACAAGACGATCTGCGCGGTGGTGGTCGGACTGTCGATCAACCTGAACGT
CTTGGACGTGGCGGAGAAGAGGATTAAGTCACGTTTCTCTTTCCAGCAGG
ACAAGACGATCTGCGCGGTGGTGGTCGGACTGTCGATCAACCTGAACGTC
TTGGACGTGGCGGAGAAGAGGATTAAGTCACGTTTCTCTTTCCAGCAGGT
GCGCCTCCCACCCCAGGACTTCGAAACCCTCGCCGCGATCCTCAAGGATG
CCCTTACGATCCCCGAGGGTGACGACGGGCACAACGCGAGCAACGGTGCC
CCCTCCCCCCCCTCTCTTGCTGCTCATACTTCTGCCCCCCGTCCGACCCG
CGTCCCCGCCGCCTACGCCCGCCGGTTCAACGCGGTCACACGCCAGACTC
TCGGTGGCAGCGAGGGCTCATCAAGCGCTGTCGTCAGCAGGCGATCTTTG
GAGGTACGGTCGGCGATGTCGGACTTGAAGGCCCTCGCGACTTCCGGCCG
TAGCATCGGGTGGTTCTTGAGGTTGGCGTCGACCGCCGTTGCGCTTCTCG
GCGTCGCTGGCACCGGTGGCGGAGGGATGAGAGTTGGGGAACCAGGATTG
ACGCGGCAGGCGCTCGTGAGGGCGGCGGAGATGCTCGCTCCCGATCCGCA
CTCGCAAGCGCTTAGGAGCTTGTCGGTGACCCAGGTTTGTCTGCTTGTGC
GCCTCCCACCCCAGGACTTCGAAACCCTCGCCGCGATCCTCAAGGATGCC
CTTACGATCCCCGAGGGTGACGACGGGCACAACGCGAGCAACGGTGCCCC
CTCCCCCCCCTCTCTTGCTGCTCATACTTCTGCCCCCCGTCCGACCCGCG
TCCCCGCCGCCTACGCCCGCCGGTTCAACGCGGTCACACGCCAGACTCTC
GGTGGCAGCGAGGGCTCATCAAGCGCTGTCGTCAGCAGGCGATCTTTGGA
GGTACGGTCGGCGATGTCGGACTTGAAGGCCCTCGCGACTTCCGGCCGTA
GCATCGGGTGGTTCTTGAGGTTGGCGTCGACCGCCGTTGCGCTTCTCGGC
GTCGCTGGCACCGGTGGCGGAGGGATGAGAGTTGGGGAACCAGGATTGAC
GCGGCAGGCGCTCGTGAGGGCGGCGGAGATGCTCGCTCCCGATCCGCACT
CGCAAGCGCTTAGGAGCTTGTCGGTGACCCAGGTTTGTCTGCTT