prot_H-elongata_contig99330.17270.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig99330.17270.1
Unique Nameprot_H-elongata_contig99330.17270.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length56
Homology
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BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0 
Query:    1 MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIPV 56
            MAR ARVLL VPAS+AVLERDFST G LITG+  RL++  VEM LFLNGNQEYIP+
Sbjct:  727 MARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782
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BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.830e-9
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:    1 MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIP 55
            +ARVARV+   PASAAVLERDFS  G ++T S   + S+ VEM +FL+GN + IP
Sbjct:  621 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675
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BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.240e-8
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0 
Query:    1 MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASEN-VEMTLFLNGNQEYIP 55
            +ARVARV+   PASAAVLERDFS  G ++T S   + S   VEM LFL+GN + IP
Sbjct:    9 LARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64
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BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 9.720e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0 
Query:    1 MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIP 55
            +AR ARV+   PASAAVLERDF+    ++  S     ++ VEM LFL+GN + IP
Sbjct:  561 LARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIP 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.350e-1675.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.830e-956.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.240e-857.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI9.720e-649.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008906HAT, C-terminal dimerisation domainPFAMPF05699Dimer_Tnp_hATcoord: 2..50
e-value: 8.8E-6
score: 25.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99330contigH-elongata_contig99330:1472..1639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99330.17270.1mRNA_H-elongata_contig99330.17270.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig99330 1463..1639 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig99330.17270.1 ID=prot_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGN
QEYIPV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008906HATC_C_dom
IPR012337RNaseH-like_sf