mRNA_H-elongata_contig99330.17270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99330.17270.1
Unique NamemRNA_H-elongata_contig99330.17270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.180e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIPV 177
            YPNMAR ARVLL VPAS+AVLERDFST G LITG+  RL++  VEM LFLNGNQEYIP+
Sbjct:  724 YPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782          
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.050e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIP 174
            YP +ARVARV+   PASAAVLERDFS  G ++T S   + S+ VEM +FL+GN + IP
Sbjct:  618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675          
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-10
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASEN-VEMTLFLNGNQEYIP 174
            YP +ARVARV+   PASAAVLERDFS  G ++T S   + S   VEM LFL+GN + IP
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64          
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-7
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIP 174
            YP +AR ARV+   PASAAVLERDF+    ++  S     ++ VEM LFL+GN + IP
Sbjct:  558 YPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIP 615          
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A819TSZ9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819TSZ9_9BILA)

HSP 1 Score: 48.1 bits (113), Expect = 3.220e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYI 171
            YPN+ARVA+ +L +PA+   +ER FS +G  +T    RL S+N+   LF+  N + +
Sbjct:   92 YPNLARVAKRILAIPATNTTIERLFSDSGNTVTDRRTRLDSDNINYLLFVMHNMKIL 148          
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A818HYY3_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818HYY3_9BILA)

HSP 1 Score: 47.0 bits (110), Expect = 6.940e-5
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGN-----QEYIPV 177
            YPN+ARVA+ +L +PAS   +ER FS TG  IT    RL  + +   LF+  N     + Y PV
Sbjct:   14 YPNLARVAKKILAIPASNTSVERLFSDTGNTITDRRTRLDVDKINNLLFIKRNTRTLKENYAPV 77          
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A2D4CBM6_PYTIN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBM6_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 9.780e-5
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIPV 177
            Y  + ++AR +  +P S+A +ERDF ++G ++T     L+  N+EM+ FLN N  +I +
Sbjct:  277 YKFLPKLARAVFALPTSSAQIERDFGSSGNMVTRHRTNLSGYNIEMSSFLNANGSFINI 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.180e-1976.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE4.050e-1156.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.070e-1057.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.380e-750.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A819TSZ9_9BILA3.220e-540.35Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A818HYY3_9BILA6.940e-542.19Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A2D4CBM6_PYTIN9.780e-535.59Dimer_Tnp_hAT domain-containing protein n=1 Tax=Py... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99330contigH-elongata_contig99330:1463..1639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size177
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931382.5954077-UTR-H-elongata_contig99330:1462..14711622931382.5954077-UTR-H-elongata_contig99330:1462..1471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99330 1463..1471 +
1691679813.5156643-UTR-H-elongata_contig99330:1462..14711691679813.5156643-UTR-H-elongata_contig99330:1462..1471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99330 1463..1471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931382.6149838-CDS-H-elongata_contig99330:1471..16391622931382.6149838-CDS-H-elongata_contig99330:1471..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99330 1472..1639 +
1691679813.5251791-CDS-H-elongata_contig99330:1471..16391691679813.5251791-CDS-H-elongata_contig99330:1471..1639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99330 1472..1639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99330.17270.1prot_H-elongata_contig99330.17270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99330 1472..1639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99330.17270.1

>prot_H-elongata_contig99330.17270.1 ID=prot_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGN
QEYIPV
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mRNA from alignment at H-elongata_contig99330:1463..1639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99330.17270.1 ID=mRNA_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig99330:1463..1639+ (Himanthalia elongata Himel1 dioecious)
TACCCGAACATGGCGCGCGTGGCTCGGGTTCTACTGTATGTGCCGGCATC TGCTGCTGTTCTCGAGAGGGACTTCAGCACGACTGGGTGGCTTATCACCG GGTCCCCTGGCCGGCTGGCGAGTGAAAACGTGGAGATGACGCTGTTCCTC AACGGCAACCAGGAGTACATCCCCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig99330:1463..1639+

>mRNA_H-elongata_contig99330.17270.1 ID=mRNA_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig99330:1463..1639+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCGCGTGGCTCGGGTTCTACTGTATGTGCCGGCATCTGCTGCTGT
TCTCGAGAGGGACTTCAGCACGACTGGGTGGCTTATCACCGGGTCCCCTG
GCCGGCTGGCGAGTGAAAACGTGGAGATGACGCTGTTCCTCAACGGCAAC
CAGGAGTACATCCCCGTGATGGCGCGCGTGGCTCGGGTTCTACTGTATGT
GCCGGCATCTGCTGCTGTTCTCGAGAGGGACTTCAGCACGACTGGGTGGC
TTATCACCGGGTCCCCTGGCCGGCTGGCGAGTGAAAACGTGGAGATGACG
CTGTTCCTCAACGGCAACCAGGAGTACATCCCCGTG
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