mRNA_H-elongata_contig99330.17270.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.180e-19 Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIPV 177
YPNMAR ARVLL VPAS+AVLERDFST G LITG+ RL++ VEM LFLNGNQEYIP+
Sbjct: 724 YPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM 782
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 4.050e-11 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIP 174
YP +ARVARV+ PASAAVLERDFS G ++T S + S+ VEM +FL+GN + IP
Sbjct: 618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIP 675
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 1.070e-10 Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASEN-VEMTLFLNGNQEYIP 174
YP +ARVARV+ PASAAVLERDFS G ++T S + S VEM LFL+GN + IP
Sbjct: 6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIP 64
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 1.380e-7 Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIP 174
YP +AR ARV+ PASAAVLERDF+ ++ S ++ VEM LFL+GN + IP
Sbjct: 558 YPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIP 615
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A819TSZ9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819TSZ9_9BILA) HSP 1 Score: 48.1 bits (113), Expect = 3.220e-5 Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYI 171
YPN+ARVA+ +L +PA+ +ER FS +G +T RL S+N+ LF+ N + +
Sbjct: 92 YPNLARVAKRILAIPATNTTIERLFSDSGNTVTDRRTRLDSDNINYLLFVMHNMKIL 148
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A818HYY3_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818HYY3_9BILA) HSP 1 Score: 47.0 bits (110), Expect = 6.940e-5 Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGN-----QEYIPV 177
YPN+ARVA+ +L +PAS +ER FS TG IT RL + + LF+ N + Y PV
Sbjct: 14 YPNLARVAKKILAIPASNTSVERLFSDTGNTITDRRTRLDVDKINNLLFIKRNTRTLKENYAPV 77
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Match: A0A2D4CBM6_PYTIN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBM6_PYTIN) HSP 1 Score: 47.8 bits (112), Expect = 9.780e-5 Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 1 YPNMARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNQEYIPV 177
Y + ++AR + +P S+A +ERDF ++G ++T L+ N+EM+ FLN N +I +
Sbjct: 277 YKFLPKLARAVFALPTSSAQIERDFGSSGNMVTRHRTNLSGYNIEMSSFLNANGSFINI 335 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99330.17270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig99330.17270.1 >prot_H-elongata_contig99330.17270.1 ID=prot_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp MARVARVLLYVPASAAVLERDFSTTGWLITGSPGRLASENVEMTLFLNGNback to top mRNA from alignment at H-elongata_contig99330:1463..1639+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig99330.17270.1 ID=mRNA_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig99330:1463..1639+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig99330:1463..1639+ >mRNA_H-elongata_contig99330.17270.1 ID=mRNA_H-elongata_contig99330.17270.1|Name=mRNA_H-elongata_contig99330.17270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig99330:1463..1639+ (Himanthalia elongata Himel1 dioecious)back to top |