mRNA_H-elongata_contig122568.1722.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: D7FXW9_ECTSI (Intraflagellar transport protein 122 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW9_ECTSI) HSP 1 Score: 235 bits (600), Expect = 1.630e-68 Identity = 137/247 (55.47%), Postives = 156/247 (63.16%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSP-------------------------------------------------------------------SSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKV-TAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKCRDYVE++AIFRDRLAVRL +KVHVYELT DD YDLRYRLKDKIYL S SS LLVTWNNVVLCEG VL+L+DF+G KVREWVLDAA+RSA VDGGPAGGE LLLGLENG VLQVFV+NAFP LVK TA VV CA+S+HR+K +AVVDAK R+M+FDV+SKE+ FQE+GA
Sbjct: 326 KVRIKCRDYVEQIAIFRDRLAVRLPDKVHVYELTQHDDKYDLRYRLKDKIYLPSAVPSSSSSTLSXXXXXXXXXXXXXXXRGSESKEDAARHQGSSSLHSQRLSTGSVDGLGGAPRDGDGGGSSFLLVTWNNVVLCEGRVLKLFDFSGAKVREWVLDAAVRSASVDGGPAGGESLLLGLENGVVLQVFVDNAFPVVLVKASTAAVVGCAMSVHRKK----VAVVDAKSRVMVFDVMSKEVEFQETGA 568
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A813ARC0_9DINO (Ift122 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ARC0_9DINO) HSP 1 Score: 170 bits (430), Expect = 4.520e-49 Identity = 87/179 (48.60%), Postives = 130/179 (72.63%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKCRDYV+K+A++RDRLAV+ ++V +YEL DD YD+ Y+ ++KI+ +LL+VT +V+LC+ LQLYD++G+K REWVL+A IR +V GGP G E LL+GL++GTVL++FV+N FP LVK A + C +S+ R+K +AVVD ++FD+ +KE +F+E+ A
Sbjct: 22 RVRIKCRDYVKKIAVYRDRLAVQTPDRVTIYELD-PDDPYDMHYKYEEKIHKKLDCNLLVVTSEHVILCQERKLQLYDYSGVKTREWVLEAVIRYIKVVGGPRGREGLLVGLKSGTVLKIFVDNPFPIHLVKHNASIRCLDLSMTRKK----LAVVDENASCLVFDLETKEQVFKEANA 195
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A7S0WY57_9CHLO (Intraflagellar transport protein 122 homolog n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WY57_9CHLO) HSP 1 Score: 169 bits (429), Expect = 1.700e-45 Identity = 86/179 (48.04%), Postives = 126/179 (70.39%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKCRDYV+K+A+++DRLAV+L ++V +YEL+H DD YD+ Y++ KI +LL+VT +V+LC+ LQLY F G + REWVL++ IR +V GGP G E LL+GL++G +L++F+NN FP +L+K T + C +S R K +AVVD M+FD+ SKEL+F+E A
Sbjct: 325 KVRIKCRDYVKKIAVYKDRLAVQLPDRVIIYELSH-DDAYDMHYKVSTKIQKRLQCNLLVVTSQHVILCQEKKLQLYSFTGTQEREWVLESVIRYIKVVGGPNGQEGLLIGLKSGMILKIFINNQFPIQLIKHTTSIRCLDLSASRSK----LAVVDENTNAMVFDLSSKELLFEEKSA 498
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A6U8LP55_9EUGL (Intraflagellar transport protein 122 homolog n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8LP55_9EUGL) HSP 1 Score: 168 bits (425), Expect = 5.850e-45 Identity = 85/179 (47.49%), Postives = 132/179 (73.74%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+++I+C+DYV+K+AI++DRLAV+L ++V +YEL + DD+YDL+++LK++I +LL+VT ++VLC+ LQLY+F+G K REWVL++ IR +V GGP E LL+GL+NGTVL++F++N FP +L+K+ +PV C +S R K +AVVD +++ + +KELIFQE A
Sbjct: 325 KLRIRCKDYVKKIAIYKDRLAVQLSDRVMIYEL-YYDDSYDLKHKLKERIMKKLECNLLVVTSMHIVLCQEKKLQLYNFSGGKQREWVLESVIRYIKVVGGPIEREALLVGLKNGTVLKIFIDNPFPIQLIKLNSPVRCLDLSASRMK----LAVVDENANCLVYHLKNKELIFQELNA 498
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: H9CTG6_CHLRE (Intraflagellar transport protein 122 homolog n=7 Tax=Chlamydomonadales TaxID=3042 RepID=H9CTG6_CHLRE) HSP 1 Score: 166 bits (419), Expect = 3.760e-44 Identity = 84/179 (46.93%), Postives = 130/179 (72.63%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKC+DYV+K+A+++D+LAV+L NKV +YEL + DD +D+ Y+ KI +LL+VT ++V+LC+ LQLY+F G+K REWVLD+ IR +V GGP E LL+GL++G +L++FV+N FP L+K TA V C +S R K +AVVD +++++++++KEL+F+ES A
Sbjct: 323 KVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADD-FDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNFDGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSASRNK----LAVVDENAKVLVYNLITKELVFEESNA 496
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A150GZ63_GONPE (Intraflagellar transport protein 122 homolog n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZ63_GONPE) HSP 1 Score: 166 bits (419), Expect = 3.850e-44 Identity = 84/179 (46.93%), Postives = 130/179 (72.63%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKC+DYV+K+A+++D+LAV+L NKV +YEL + DD +D+ Y+ KI +LL+VT ++V+LC+ LQLY+F G+K REWVLD+ IR +V GGP E LL+GL++G +L++FV+N FP L+K TA V C +S R K +AVVD +++++++++KEL+F+ES A
Sbjct: 690 KVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADD-FDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNFDGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSASRNK----LAVVDENAKVLVYNLITKELVFEESNA 863
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: D8TQ61_VOLCA (Intraflagellar transport protein 122 homolog n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQ61_VOLCA) HSP 1 Score: 165 bits (418), Expect = 5.260e-44 Identity = 84/179 (46.93%), Postives = 130/179 (72.63%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKC+DYV+K+A+++D+LAV+L NKV +YEL + DD +D+ Y+ KI +LL+VT ++V+LC+ LQLY+F G+K REWVLD+ IR +V GGP E LL+GL++G +L++FV+N FP L+K TA V C +S R K +AVVD +++++++++KEL+F+ES A
Sbjct: 797 KVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADD-FDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNFDGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSSSRNK----LAVVDENAKVLVYNLITKELVFEESNA 970
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A7S0T117_9CHLO (Intraflagellar transport protein 122 homolog (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T117_9CHLO) HSP 1 Score: 164 bits (414), Expect = 1.740e-43 Identity = 82/179 (45.81%), Postives = 128/179 (71.51%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKCRDYV+K+A+++DRLAV+L ++V +YEL H DD+YD+ YR+ KI +LL+VT ++V+LC LQLY F G+ REWVL+A IR ++ GGP E LL+GL+NG + ++F++NAFP +L+K T+ + C +S R+K +AVVD ++++D+ +K+LIF++ A
Sbjct: 325 KVRIKCRDYVKKIAVYKDRLAVQLPDRVIIYELLH-DDSYDMHYRVATKIQKKLDCNLLVVTSHHVILCLEKKLQLYGFNGVMEREWVLEAVIRYIKIVGGPENREGLLVGLKNGMIQKIFIDNAFPIQLIKHTSSIRCLDLSFRRQK----LAVVDESTAVVVYDLATKKLIFEDKNA 498
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A383W1F4_TETOB (Intraflagellar transport protein 122 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W1F4_TETOB) HSP 1 Score: 164 bits (414), Expect = 1.770e-43 Identity = 82/179 (45.81%), Postives = 128/179 (71.51%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKCRDYV+KVA+++DR+AV+L ++V +Y+L D+ D++YR KI +LL+VT N+++LC+ LQLY F G+ VREW++DA +R +V GGPAG E LL+GL++G VL+++V+NAFP L+K T + C +S RRK +A+VD ++++D+ +KEL+F+ GA
Sbjct: 322 KVRIKCRDYVKKVAVYKDRVAVQLPSRVVLYKLDSSADDMDMQYRSAAKINQKLECNLLVVTSNHILLCQEKQLQLYSFEGVLVREWMMDAVVRYIKVAGGPAGKEGLLVGLKHGAVLKIYVDNAFPIPLIKHTCSIRCLDLSCSRRK----LALVDETNTVVVYDLHTKELLFESKGA 496
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A388KCR6_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KCR6_CHABU) HSP 1 Score: 160 bits (404), Expect = 2.920e-43 Identity = 81/179 (45.25%), Postives = 129/179 (72.07%), Query Frame = 1
Query: 1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
+V+IKCRDYV+++A++R+RLAV+L ++V +YEL +DD +D++YR+ KI +LL++T +++LC+ LQLY+F G K REW+LD+ IR +V GGP G E LL+GL++G +L++F++NAFP +L+K A + C +S R+K +AVVD I++F + +KEL+F+E A
Sbjct: 14 KVRIKCRDYVKRIAVYRERLAVQLPDRVIIYELA-EDDGFDMQYRVSTKIQRKLDCNLLVLTSMHIILCQEKKLQLYNFDGNKEREWLLDSIIRYIKVIGGPNGREGLLVGLKSGLILKIFIDNAFPIQLIKHHASIRCLDLSSTRQK----LAVVDENTSILVFSLQTKELLFEEKNA 187 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122568.1722.1 >prot_H-elongata_contig122568.1722.1 ID=prot_H-elongata_contig122568.1722.1|Name=mRNA_H-elongata_contig122568.1722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIback to top mRNA from alignment at H-elongata_contig122568:282..1939- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122568.1722.1 ID=mRNA_H-elongata_contig122568.1722.1|Name=mRNA_H-elongata_contig122568.1722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1658bp|location=Sequence derived from alignment at H-elongata_contig122568:282..1939- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122568:282..1939- >mRNA_H-elongata_contig122568.1722.1 ID=mRNA_H-elongata_contig122568.1722.1|Name=mRNA_H-elongata_contig122568.1722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig122568:282..1939- (Himanthalia elongata Himel1 dioecious)back to top |