mRNA_H-elongata_contig122568.1722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122568.1722.1
Unique NamemRNA_H-elongata_contig122568.1722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: D7FXW9_ECTSI (Intraflagellar transport protein 122 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW9_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.630e-68
Identity = 137/247 (55.47%), Postives = 156/247 (63.16%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSP-------------------------------------------------------------------SSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKV-TAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKCRDYVE++AIFRDRLAVRL +KVHVYELT  DD YDLRYRLKDKIYL S                                                                    SS LLVTWNNVVLCEG VL+L+DF+G KVREWVLDAA+RSA VDGGPAGGE LLLGLENG VLQVFV+NAFP  LVK  TA VV CA+S+HR+K    +AVVDAK R+M+FDV+SKE+ FQE+GA
Sbjct:  326 KVRIKCRDYVEQIAIFRDRLAVRLPDKVHVYELTQHDDKYDLRYRLKDKIYLPSAVPSSSSSTLSXXXXXXXXXXXXXXXRGSESKEDAARHQGSSSLHSQRLSTGSVDGLGGAPRDGDGGGSSFLLVTWNNVVLCEGRVLKLFDFSGAKVREWVLDAAVRSASVDGGPAGGESLLLGLENGVVLQVFVDNAFPVVLVKASTAAVVGCAMSVHRKK----VAVVDAKSRVMVFDVMSKEVEFQETGA 568          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A813ARC0_9DINO (Ift122 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ARC0_9DINO)

HSP 1 Score: 170 bits (430), Expect = 4.520e-49
Identity = 87/179 (48.60%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKCRDYV+K+A++RDRLAV+  ++V +YEL   DD YD+ Y+ ++KI+     +LL+VT  +V+LC+   LQLYD++G+K REWVL+A IR  +V GGP G E LL+GL++GTVL++FV+N FP  LVK  A + C  +S+ R+K    +AVVD     ++FD+ +KE +F+E+ A
Sbjct:   22 RVRIKCRDYVKKIAVYRDRLAVQTPDRVTIYELD-PDDPYDMHYKYEEKIHKKLDCNLLVVTSEHVILCQERKLQLYDYSGVKTREWVLEAVIRYIKVVGGPRGREGLLVGLKSGTVLKIFVDNPFPIHLVKHNASIRCLDLSMTRKK----LAVVDENASCLVFDLETKEQVFKEANA 195          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A7S0WY57_9CHLO (Intraflagellar transport protein 122 homolog n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WY57_9CHLO)

HSP 1 Score: 169 bits (429), Expect = 1.700e-45
Identity = 86/179 (48.04%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKCRDYV+K+A+++DRLAV+L ++V +YEL+H DD YD+ Y++  KI      +LL+VT  +V+LC+   LQLY F G + REWVL++ IR  +V GGP G E LL+GL++G +L++F+NN FP +L+K T  + C  +S  R K    +AVVD     M+FD+ SKEL+F+E  A
Sbjct:  325 KVRIKCRDYVKKIAVYKDRLAVQLPDRVIIYELSH-DDAYDMHYKVSTKIQKRLQCNLLVVTSQHVILCQEKKLQLYSFTGTQEREWVLESVIRYIKVVGGPNGQEGLLIGLKSGMILKIFINNQFPIQLIKHTTSIRCLDLSASRSK----LAVVDENTNAMVFDLSSKELLFEEKSA 498          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A6U8LP55_9EUGL (Intraflagellar transport protein 122 homolog n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8LP55_9EUGL)

HSP 1 Score: 168 bits (425), Expect = 5.850e-45
Identity = 85/179 (47.49%), Postives = 132/179 (73.74%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +++I+C+DYV+K+AI++DRLAV+L ++V +YEL + DD+YDL+++LK++I      +LL+VT  ++VLC+   LQLY+F+G K REWVL++ IR  +V GGP   E LL+GL+NGTVL++F++N FP +L+K+ +PV C  +S  R K    +AVVD     +++ + +KELIFQE  A
Sbjct:  325 KLRIRCKDYVKKIAIYKDRLAVQLSDRVMIYEL-YYDDSYDLKHKLKERIMKKLECNLLVVTSMHIVLCQEKKLQLYNFSGGKQREWVLESVIRYIKVVGGPIEREALLVGLKNGTVLKIFIDNPFPIQLIKLNSPVRCLDLSASRMK----LAVVDENANCLVYHLKNKELIFQELNA 498          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: H9CTG6_CHLRE (Intraflagellar transport protein 122 homolog n=7 Tax=Chlamydomonadales TaxID=3042 RepID=H9CTG6_CHLRE)

HSP 1 Score: 166 bits (419), Expect = 3.760e-44
Identity = 84/179 (46.93%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKC+DYV+K+A+++D+LAV+L NKV +YEL + DD +D+ Y+   KI      +LL+VT ++V+LC+   LQLY+F G+K REWVLD+ IR  +V GGP   E LL+GL++G +L++FV+N FP  L+K TA V C  +S  R K    +AVVD   +++++++++KEL+F+ES A
Sbjct:  323 KVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADD-FDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNFDGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSASRNK----LAVVDENAKVLVYNLITKELVFEESNA 496          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A150GZ63_GONPE (Intraflagellar transport protein 122 homolog n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZ63_GONPE)

HSP 1 Score: 166 bits (419), Expect = 3.850e-44
Identity = 84/179 (46.93%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKC+DYV+K+A+++D+LAV+L NKV +YEL + DD +D+ Y+   KI      +LL+VT ++V+LC+   LQLY+F G+K REWVLD+ IR  +V GGP   E LL+GL++G +L++FV+N FP  L+K TA V C  +S  R K    +AVVD   +++++++++KEL+F+ES A
Sbjct:  690 KVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADD-FDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNFDGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSASRNK----LAVVDENAKVLVYNLITKELVFEESNA 863          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: D8TQ61_VOLCA (Intraflagellar transport protein 122 homolog n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQ61_VOLCA)

HSP 1 Score: 165 bits (418), Expect = 5.260e-44
Identity = 84/179 (46.93%), Postives = 130/179 (72.63%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKC+DYV+K+A+++D+LAV+L NKV +YEL + DD +D+ Y+   KI      +LL+VT ++V+LC+   LQLY+F G+K REWVLD+ IR  +V GGP   E LL+GL++G +L++FV+N FP  L+K TA V C  +S  R K    +AVVD   +++++++++KEL+F+ES A
Sbjct:  797 KVRIKCKDYVKKIAVYKDKLAVQLQNKVVIYELANADD-FDMHYQSATKIQQKLDCNLLVVTSHHVILCQEKKLQLYNFDGVKEREWVLDSVIRYIKVVGGPPRREGLLVGLKSGAILKIFVDNPFPIPLIKHTASVRCLDLSSSRNK----LAVVDENAKVLVYNLITKELVFEESNA 970          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A7S0T117_9CHLO (Intraflagellar transport protein 122 homolog (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T117_9CHLO)

HSP 1 Score: 164 bits (414), Expect = 1.740e-43
Identity = 82/179 (45.81%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKCRDYV+K+A+++DRLAV+L ++V +YEL H DD+YD+ YR+  KI      +LL+VT ++V+LC    LQLY F G+  REWVL+A IR  ++ GGP   E LL+GL+NG + ++F++NAFP +L+K T+ + C  +S  R+K    +AVVD    ++++D+ +K+LIF++  A
Sbjct:  325 KVRIKCRDYVKKIAVYKDRLAVQLPDRVIIYELLH-DDSYDMHYRVATKIQKKLDCNLLVVTSHHVILCLEKKLQLYGFNGVMEREWVLEAVIRYIKIVGGPENREGLLVGLKNGMIQKIFIDNAFPIQLIKHTSSIRCLDLSFRRQK----LAVVDESTAVVVYDLATKKLIFEDKNA 498          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A383W1F4_TETOB (Intraflagellar transport protein 122 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W1F4_TETOB)

HSP 1 Score: 164 bits (414), Expect = 1.770e-43
Identity = 82/179 (45.81%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKCRDYV+KVA+++DR+AV+L ++V +Y+L    D+ D++YR   KI      +LL+VT N+++LC+   LQLY F G+ VREW++DA +R  +V GGPAG E LL+GL++G VL+++V+NAFP  L+K T  + C  +S  RRK    +A+VD    ++++D+ +KEL+F+  GA
Sbjct:  322 KVRIKCRDYVKKVAVYKDRVAVQLPSRVVLYKLDSSADDMDMQYRSAAKINQKLECNLLVVTSNHILLCQEKQLQLYSFEGVLVREWMMDAVVRYIKVAGGPAGKEGLLVGLKHGAVLKIYVDNAFPIPLIKHTCSIRCLDLSCSRRK----LALVDETNTVVVYDLHTKELLFESKGA 496          
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Match: A0A388KCR6_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KCR6_CHABU)

HSP 1 Score: 160 bits (404), Expect = 2.920e-43
Identity = 81/179 (45.25%), Postives = 129/179 (72.07%), Query Frame = 1
Query:    1 QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKIYLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDGGPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKASCAIAVVDAKRRIMLFDVLSKELIFQESGA 537
            +V+IKCRDYV+++A++R+RLAV+L ++V +YEL  +DD +D++YR+  KI      +LL++T  +++LC+   LQLY+F G K REW+LD+ IR  +V GGP G E LL+GL++G +L++F++NAFP +L+K  A + C  +S  R+K    +AVVD    I++F + +KEL+F+E  A
Sbjct:   14 KVRIKCRDYVKRIAVYRERLAVQLPDRVIIYELA-EDDGFDMQYRVSTKIQRKLDCNLLVLTSMHIILCQEKKLQLYNFDGNKEREWLLDSIIRYIKVIGGPNGREGLLVGLKSGLILKIFIDNAFPIQLIKHHASIRCLDLSSTRQK----LAVVDENTSILVFSLQTKELLFEEKNA 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122568.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXW9_ECTSI1.630e-6855.47Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A813ARC0_9DINO4.520e-4948.60Ift122 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A7S0WY57_9CHLO1.700e-4548.04Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A6U8LP55_9EUGL5.850e-4547.49Intraflagellar transport protein 122 homolog n=1 T... [more]
H9CTG6_CHLRE3.760e-4446.93Intraflagellar transport protein 122 homolog n=7 T... [more]
A0A150GZ63_GONPE3.850e-4446.93Intraflagellar transport protein 122 homolog n=1 T... [more]
D8TQ61_VOLCA5.260e-4446.93Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A7S0T117_9CHLO1.740e-4345.81Intraflagellar transport protein 122 homolog (Frag... [more]
A0A383W1F4_TETOB1.770e-4345.81Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A388KCR6_CHABU2.920e-4345.25Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122568contigH-elongata_contig122568:282..1939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue2.2e-59
Seed eggNOG ortholog2880.D7FXW9
Preferred nameIFT122
KEGG koko:K16547,ko:K19656
GOsGO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0003002,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010171,GO:0010172,GO:0010646,GO:0010648,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0021510,GO:0021511,GO:0021513,GO:0021532,GO:0021904,GO:0021914,GO:0021915,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030031,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035136,GO:0035148,GO:0035239,GO:0035295,GO:0035556,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043113,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045879,GO:0046626,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048568,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051641,GO:0051649,GO:0051668,GO:0051716,GO:0051960,GO:0051961,GO:0060173,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060830,GO:0060831,GO:0060971,GO:0060972,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0072594,GO:0072657,GO:0090596,GO:0097458,GO:0097499,GO:0097500,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1900076,GO:1903441,GO:1905515,GO:1990778,GO:2000026
EggNOG free text desc.ciliary receptor clustering involved in smoothened signaling pathway
EggNOG OGsCOG2319@1,KOG1538@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size537
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122568.1722.1prot_H-elongata_contig122568.1722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122568 282..1939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.2211924-CDS-H-elongata_contig122568:281..3621622929721.2211924-CDS-H-elongata_contig122568:281..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 282..362 -
1691679132.3050148-CDS-H-elongata_contig122568:281..3621691679132.3050148-CDS-H-elongata_contig122568:281..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 282..362 -
1622929721.2416155-CDS-H-elongata_contig122568:819..10261622929721.2416155-CDS-H-elongata_contig122568:819..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 820..1026 -
1691679132.3189464-CDS-H-elongata_contig122568:819..10261691679132.3189464-CDS-H-elongata_contig122568:819..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 820..1026 -
1622929721.2590656-CDS-H-elongata_contig122568:1287..13711622929721.2590656-CDS-H-elongata_contig122568:1287..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 1288..1371 -
1691679132.3288767-CDS-H-elongata_contig122568:1287..13711691679132.3288767-CDS-H-elongata_contig122568:1287..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 1288..1371 -
1622929721.275233-CDS-H-elongata_contig122568:1554..16381622929721.275233-CDS-H-elongata_contig122568:1554..1638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 1555..1638 -
1691679132.347063-CDS-H-elongata_contig122568:1554..16381691679132.347063-CDS-H-elongata_contig122568:1554..1638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 1555..1638 -
1622929721.2860122-CDS-H-elongata_contig122568:1858..19391622929721.2860122-CDS-H-elongata_contig122568:1858..1939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 1859..1939 -
1691679132.360162-CDS-H-elongata_contig122568:1858..19391691679132.360162-CDS-H-elongata_contig122568:1858..1939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122568 1859..1939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122568.1722.1

>prot_H-elongata_contig122568.1722.1 ID=prot_H-elongata_contig122568.1722.1|Name=mRNA_H-elongata_contig122568.1722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
QVKIKCRDYVEKVAIFRDRLAVRLLNKVHVYELTHQDDNYDLRYRLKDKI
YLTSPSSLLLVTWNNVVLCEGNVLQLYDFAGMKVREWVLDAAIRSARVDG
GPAGGEVLLLGLENGTVLQVFVNNAFPAELVKVTAPVVCCAVSLHRRKAS
CAIAVVDAKRRIMLFDVLSKELIFQESGA
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mRNA from alignment at H-elongata_contig122568:282..1939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122568.1722.1 ID=mRNA_H-elongata_contig122568.1722.1|Name=mRNA_H-elongata_contig122568.1722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1658bp|location=Sequence derived from alignment at H-elongata_contig122568:282..1939- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAAATAAAGTGCAGGGATTACGTGGAGAAGGTCGCCATATTTCG GGACCGCTTGGCAGTTCGACTCCTGAACAAGGTAACTGATTATTTGGCCC TTCGCCAACCAGCCCCCTTCCTGAAGCAAACTTCAGGCGTAATCAACTCA CCAGGCAGAGTTCACCCCAACTTTCGCAGCGATCGCAATGCTGGAACTAA ATAGAACACTCTGACACGATTCTACCCCCTTCTCAAATTATCTATCGCCT GGAAATTATAAATCTACCACAAAATTCGTCGATCGGCAAACCTATCCTTA GGTGCACGTGTACGAGCTAACCCACCAAGACGACAACTACGACTTGCGCT ATAGGCTCAAGGATAAGATATACCTCACGTCCCCGGTAGCGTCAGTCTCT CTACCATCAACCGCGTTAACCACTCAAGCCGAAGACATCGACCATAATAT AGAAGAGATCAAGAGGGTCGGCACCACGAGCAAGAGCAGTCGACCCCGCG ATTACCACAGTGCAGCGTCCACCGGCGGATCTGGAGAGAGGAGGGTGAAT GGCCTTGTAACGACAGAGTCGTCGTTGTTGCTGGTGACATGGAACAATGT AGTCTTGTGCGAAGGGAACGTACTGCAGCTCTACGACTTCGCTGGCATGA AGGTACTTTAATACACGTATAGCAGGTCCAACTATTTGCAAGGTGCGTTG GTACACTATTACACCCATAGCACAGCAGCTCACCCTACTCGGAAGGTGTC CACATCTCGCTGTACGGCAGATGCAGTGTGATTTAAGGGCTTTAAGTTGA TGTGCCGGCGGGGACAGCGCTACGCACATGACAGTCATCCACCGAGAGAA TCGAATCCGTGAGATCATGACGACAAGATGAAGCGAGCAACGTCTTAAAA TATATTTACGTAGGTGCGTGAATGGGTACTCGATGCGGCTATCCGCAGCG CCCGCGTAGATGGTGGTCCTGCAGGAGGGGAAGTCTTACTGTTGGGCCTT GAAAACGGGACGGTGCTTCAAGTGTTCGTGAACAACGCCTTTCCCGCGGA GCTGGTAAAAGTCACGGCCCCGGTTGTATGCTGTGCCGTCTCCTTACACC GGAGGAAGGCAAGTTGCGCGGTGGCGATCGGCGTACGGAGACAAGCTGTA GTAGAAGGTAGTATGACACTCGTATAAAGAGTTTGTCTCATATGTAAAGT GTGATTAGGCCGCCACCCCATCACTGCTGGGGATCCACTATGACTGAGAG GTACTCCGTGCCCCCATTTAAAGTTTTCTTGTCATATAATAACATCCTGC ATGCGCGCCGATCAACATTCTCTCGGGTTTCTTCTGAATGGGCATGCATA ATCTCAGGCTGGCGTTCCTAAAAAAAACACAATTCATGTTCAATACAAGG TCAGACATATATACATATAATCAAGCAGGTGTAAAGTGCAGTACATGGGC GGCCCGTATTGAGTGACATGCGCGATTCCCTTCAACACGGCGTAGGGGAT CTTGTGGCCGTCGAGAAGATGTGGTTTGTCTCTTGTCGTCCCCGCTGCAA CAAACACGCGCGTGCGAACGCCTCCAGATCGCAGTCGTCGACGCAAAGAG AAGAATTATGCTGTTCGATGTGCTCTCCAAGGAACTTATTTTCCAAGAAT CTGGCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig122568:282..1939-

>mRNA_H-elongata_contig122568.1722.1 ID=mRNA_H-elongata_contig122568.1722.1|Name=mRNA_H-elongata_contig122568.1722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig122568:282..1939- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAAATAAAGTGCAGGGATTACGTGGAGAAGGTCGCCATATTTCG
GGACCGCTTGGCAGTTCGACTCCTGAACAAGCAGGTGAAAATAAAGTGCA
GGGATTACGTGGAGAAGGTCGCCATATTTCGGGACCGCTTGGCAGTTCGA
CTCCTGAACAAGGTGCACGTGTACGAGCTAACCCACCAAGACGACAACTA
CGACTTGCGCTATAGGCTCAAGGATAAGATATACCTCACGTCCCCGGTGC
ACGTGTACGAGCTAACCCACCAAGACGACAACTACGACTTGCGCTATAGG
CTCAAGGATAAGATATACCTCACGTCCCCGTCGTCGTTGTTGCTGGTGAC
ATGGAACAATGTAGTCTTGTGCGAAGGGAACGTACTGCAGCTCTACGACT
TCGCTGGCATGAAGTCGTCGTTGTTGCTGGTGACATGGAACAATGTAGTC
TTGTGCGAAGGGAACGTACTGCAGCTCTACGACTTCGCTGGCATGAAGGT
GCGTGAATGGGTACTCGATGCGGCTATCCGCAGCGCCCGCGTAGATGGTG
GTCCTGCAGGAGGGGAAGTCTTACTGTTGGGCCTTGAAAACGGGACGGTG
CTTCAAGTGTTCGTGAACAACGCCTTTCCCGCGGAGCTGGTAAAAGTCAC
GGCCCCGGTTGTATGCTGTGCCGTCTCCTTACACCGGAGGAAGGCAAGTT
GCGCGGTGCGTGAATGGGTACTCGATGCGGCTATCCGCAGCGCCCGCGTA
GATGGTGGTCCTGCAGGAGGGGAAGTCTTACTGTTGGGCCTTGAAAACGG
GACGGTGCTTCAAGTGTTCGTGAACAACGCCTTTCCCGCGGAGCTGGTAA
AAGTCACGGCCCCGGTTGTATGCTGTGCCGTCTCCTTACACCGGAGGAAG
GCAAGTTGCGCGATCGCAGTCGTCGACGCAAAGAGAAGAATTATGCTGTT
CGATGTGCTCTCCAAGGAACTTATTTTCCAAGAATCTGGCGCCATCGCAG
TCGTCGACGCAAAGAGAAGAATTATGCTGTTCGATGTGCTCTCCAAGGAA
CTTATTTTCCAAGAATCTGGCGCC
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