mRNA_H-elongata_contig122369.1711.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A836B3C4_9CHLO (HECT domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B3C4_9CHLO) HSP 1 Score: 68.6 bits (166), Expect = 1.510e-11 Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIAS-SRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
+LG +P AHTCDN+LE+PNYW L+ G + A+ +R A LTPE++ L R +LA RL LA+ N GY LD+
Sbjct: 701 TLGMLPQAHTCDNLLELPNYWESLLHTRGVKGGPAAVARGAAA--LTPEQLAELREETRRILAERLELAVLNFQGYGLDE 778
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: D8UCH3_VOLCA (HECT domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UCH3_VOLCA) HSP 1 Score: 68.2 bits (165), Expect = 2.060e-11 Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDL-----DDDDTGS 261
+LG +P AHTCDN+LE+PNYW L+ G A+ T LT +V+ L +R +L RL +A+ N GY LD+ DDDD G+
Sbjct: 671 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAVARGT-SQLTEGQVEELRGEVRRILENRLEMAVLNFQGYGLDERSGGRDDDDDNGA 761
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A2K3D6D9_CHLRE (HECT domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D6D9_CHLRE) HSP 1 Score: 66.2 bits (160), Expect = 9.790e-11 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIAS-SRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
+LG +P AHTCDN+LE+PNYW L++ G + A+ +R A LTPE++ L R +L RL +A+ N GY LD+
Sbjct: 703 TLGMLPQAHTCDNLLELPNYWESLLQTRGVKGGPAAVARGAAA--LTPEQLTELRDETRRILGERLEIAVLNFQGYGLDE 780
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A150GTT8_GONPE (HECT domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GTT8_GONPE) HSP 1 Score: 65.5 bits (158), Expect = 1.810e-10 Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDL---DDDDTG 258
+LG +P AHTCDN+LE+PNYW L+ G A+ T +T ++ L A R +L RL +A+ N GY LD+ DDDD G
Sbjct: 487 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAIARGTTT-VTDGQLAELRAEARRILDDRLEIAVSNFQGYGLDERSGPDDDDYG 574
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A8J4C3Q5_9CHLO (HECT domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3Q5_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10 Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
+LG +P AHTCDN+LE+PNYW L+ G + T LT E++ L A R +LA RL +A+ N GY LD+
Sbjct: 669 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPTAVARGTA-QLTEEQLADLRAETRRILADRLEVAVLNFQGYGLDE 746
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A8J4F060_9CHLO (HECT domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F060_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10 Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
+LG +P AHTCDN+LE+PNYW L+ G + T LT E++ L A R +LA RL +A+ N GY LD+
Sbjct: 668 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPTAVARGTA-QLTEEQMTDLRAETRRILADRLEVAVLNFQGYGLDE 745
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A835ZDJ6_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ6_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.250e-9 Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 4 LGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALD 234
LG VP AHTCDNVLEVP+YW L+ G++ SA L + L +LR L +L LAI NA GY LD
Sbjct: 116 LGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKL-------MGDLRQKLRKHLRDKLLLAIANAQGYGLD 185
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A2J7ZGK1_9CHLO (Putative E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZGK1_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 3.900e-9 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIAS-SRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
+LG +P AHTCDN+LE+PNYW L+ G A+ +R A LT E+ L A R +L RL +A+ N GY LD+
Sbjct: 316 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAVARGAAA--LTHEQRAELRAEARRILDERLEIAVLNFQGYGLDE 393
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A835XN03_9CHLO (HECT domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XN03_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 4.130e-9 Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 4 LGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDL--DDDD 252
LG +P AHTCDN+LE+PNYW L+ G + + T LT +++ + +R +L RL LA+ N +GY LD+ DDDD
Sbjct: 662 LGMLPQAHTCDNLLELPNYWESLLTMRGIKGGPTAVARGTA-GLTEAQLEDCKEEVRRILDDRLTLAVLNFSGYGLDERSRDDDD 745
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 7.910e-9 Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 4 LGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDLD 243
L VP +HTCDN+LE+PNYW L++ + E A P + ALE LR ++ +L +A++NA GY LD L+
Sbjct: 1575 LAMVPQSHTCDNILELPNYWEALLKTKTDE--------ARPPRRGSRECNALERELRRIVREKLLVALDNAVGYGLDALE 1646 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122369.1711.1 >prot_H-elongata_contig122369.1711.1 ID=prot_H-elongata_contig122369.1711.1|Name=mRNA_H-elongata_contig122369.1711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVback to top mRNA from alignment at H-elongata_contig122369:1108..1693+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122369.1711.1 ID=mRNA_H-elongata_contig122369.1711.1|Name=mRNA_H-elongata_contig122369.1711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig122369:1108..1693+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122369:1108..1693+ >mRNA_H-elongata_contig122369.1711.1 ID=mRNA_H-elongata_contig122369.1711.1|Name=mRNA_H-elongata_contig122369.1711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig122369:1108..1693+ (Himanthalia elongata Himel1 dioecious)back to top |