mRNA_H-elongata_contig122369.1711.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122369.1711.1
Unique NamemRNA_H-elongata_contig122369.1711.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A836B3C4_9CHLO (HECT domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836B3C4_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 1.510e-11
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIAS-SRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
            +LG +P AHTCDN+LE+PNYW  L+   G +   A+ +R A    LTPE++  L    R +LA RL LA+ N  GY LD+
Sbjct:  701 TLGMLPQAHTCDNLLELPNYWESLLHTRGVKGGPAAVARGAAA--LTPEQLAELREETRRILAERLELAVLNFQGYGLDE 778          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: D8UCH3_VOLCA (HECT domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UCH3_VOLCA)

HSP 1 Score: 68.2 bits (165), Expect = 2.060e-11
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDL-----DDDDTGS 261
            +LG +P AHTCDN+LE+PNYW  L+   G     A+    T   LT  +V+ L   +R +L  RL +A+ N  GY LD+      DDDD G+
Sbjct:  671 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAVARGT-SQLTEGQVEELRGEVRRILENRLEMAVLNFQGYGLDERSGGRDDDDDNGA 761          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A2K3D6D9_CHLRE (HECT domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D6D9_CHLRE)

HSP 1 Score: 66.2 bits (160), Expect = 9.790e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIAS-SRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
            +LG +P AHTCDN+LE+PNYW  L++  G +   A+ +R A    LTPE++  L    R +L  RL +A+ N  GY LD+
Sbjct:  703 TLGMLPQAHTCDNLLELPNYWESLLQTRGVKGGPAAVARGAAA--LTPEQLTELRDETRRILGERLEIAVLNFQGYGLDE 780          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A150GTT8_GONPE (HECT domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GTT8_GONPE)

HSP 1 Score: 65.5 bits (158), Expect = 1.810e-10
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDL---DDDDTG 258
            +LG +P AHTCDN+LE+PNYW  L+   G     A+    T   +T  ++  L A  R +L  RL +A+ N  GY LD+    DDDD G
Sbjct:  487 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAIARGTTT-VTDGQLAELRAEARRILDDRLEIAVSNFQGYGLDERSGPDDDDYG 574          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A8J4C3Q5_9CHLO (HECT domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3Q5_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
            +LG +P AHTCDN+LE+PNYW  L+   G      +    T   LT E++  L A  R +LA RL +A+ N  GY LD+
Sbjct:  669 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPTAVARGTA-QLTEEQLADLRAETRRILADRLEVAVLNFQGYGLDE 746          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A8J4F060_9CHLO (HECT domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F060_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-10
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
            +LG +P AHTCDN+LE+PNYW  L+   G      +    T   LT E++  L A  R +LA RL +A+ N  GY LD+
Sbjct:  668 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPTAVARGTA-QLTEEQMTDLRAETRRILADRLEVAVLNFQGYGLDE 745          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A835ZDJ6_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.250e-9
Identity = 36/77 (46.75%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    4 LGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALD 234
            LG VP AHTCDNVLEVP+YW  L+   G++       SA L       +  L  +LR  L  +L LAI NA GY LD
Sbjct:  116 LGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKL-------MGDLRQKLRKHLRDKLLLAIANAQGYGLD 185          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A2J7ZGK1_9CHLO (Putative E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZGK1_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 3.900e-9
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIAS-SRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDD 237
            +LG +P AHTCDN+LE+PNYW  L+   G     A+ +R A    LT E+   L A  R +L  RL +A+ N  GY LD+
Sbjct:  316 TLGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAVARGAAA--LTHEQRAELRAEARRILDERLEIAVLNFQGYGLDE 393          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A835XN03_9CHLO (HECT domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XN03_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 4.130e-9
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    4 LGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDL--DDDD 252
            LG +P AHTCDN+LE+PNYW  L+   G +    +    T   LT  +++  +  +R +L  RL LA+ N +GY LD+   DDDD
Sbjct:  662 LGMLPQAHTCDNLLELPNYWESLLTMRGIKGGPTAVARGTA-GLTEAQLEDCKEEVRRILDDRLTLAVLNFSGYGLDERSRDDDD 745          
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.910e-9
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    4 LGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKVKALEARLRWVLAGRLRLAIENATGYALDDLD 243
            L  VP +HTCDN+LE+PNYW  L++ +  E        A  P     +  ALE  LR ++  +L +A++NA GY LD L+
Sbjct: 1575 LAMVPQSHTCDNILELPNYWEALLKTKTDE--------ARPPRRGSRECNALERELRRIVREKLLVALDNAVGYGLDALE 1646          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122369.1711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A836B3C4_9CHLO1.510e-1146.25HECT domain-containing protein n=1 Tax=Chlamydomon... [more]
D8UCH3_VOLCA2.060e-1141.30HECT domain-containing protein n=1 Tax=Volvox cart... [more]
A0A2K3D6D9_CHLRE9.790e-1143.75HECT domain-containing protein n=3 Tax=Chlamydomon... [more]
A0A150GTT8_GONPE1.810e-1041.57HECT domain-containing protein n=1 Tax=Gonium pect... [more]
A0A8J4C3Q5_9CHLO1.820e-1043.04HECT domain-containing protein n=2 Tax=Volvox reti... [more]
A0A8J4F060_9CHLO1.820e-1043.04HECT domain-containing protein n=2 Tax=Volvox afri... [more]
A0A835ZDJ6_9STRA2.250e-946.75HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2J7ZGK1_9CHLO3.900e-943.75Putative E3 ubiquitin-protein ligase (Fragment) n=... [more]
A0A835XN03_9CHLO4.130e-941.18HECT domain-containing protein n=1 Tax=Edaphochlam... [more]
A0A7S3ZUA9_9STRA7.910e-940.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122369contigH-elongata_contig122369:1108..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1e-09
Seed eggNOG ortholog3067.XP_002956407.1
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpossible MAPK
Ec32 orthologEc-03_005020.2
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929720.308603-CDS-H-elongata_contig122369:1107..12581622929720.308603-CDS-H-elongata_contig122369:1107..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122369 1108..1258 +
1691679131.9305987-CDS-H-elongata_contig122369:1107..12581691679131.9305987-CDS-H-elongata_contig122369:1107..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122369 1108..1258 +
1622929720.32032-CDS-H-elongata_contig122369:1580..16931622929720.32032-CDS-H-elongata_contig122369:1580..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122369 1581..1693 +
1691679131.9422722-CDS-H-elongata_contig122369:1580..16931691679131.9422722-CDS-H-elongata_contig122369:1580..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122369 1581..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122369.1711.1prot_H-elongata_contig122369.1711.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122369 1108..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122369.1711.1

>prot_H-elongata_contig122369.1711.1 ID=prot_H-elongata_contig122369.1711.1|Name=mRNA_H-elongata_contig122369.1711.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
SLGTVPTAHTCDNVLEVPNYWALLMRAEGWEWSIASSRSATLPDLTPEKV
KALEARLRWVLAGRLRLAIENATGYALDDLDDDDTGSD
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mRNA from alignment at H-elongata_contig122369:1108..1693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122369.1711.1 ID=mRNA_H-elongata_contig122369.1711.1|Name=mRNA_H-elongata_contig122369.1711.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig122369:1108..1693+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGGAACGGTCCCGACCGCGCACACGTGCGATAATGTCCTGGAGGT GCCGAACTACTGGGCCCTTTTGATGCGAGCCGAAGGGTGGGAGTGGTCGA TAGCATCCTCGCGGAGTGCAACCCTGCCAGATCTTACGCCGGAAAAGGTA AGTTAATGTGTATAACAATATATATGTGTGTGTACATTTATTAAATTGCA CATAACCACGCAATCCGGCCCTGTCATGCTATTCCTTCTAGGGTACTCTC GCATTGATTCTCGCAATGAATGGGGGATCAATCGTAGATGTGTGTGTGTG TGTGTGTTAGAGAGAGAGGCGGGGGGATAGGGAGGCGTGCACCCACGGTA GTTTGAAGCTCGTTCCCTTTTCCTCGCGTCGTGGCCTAATAATAACATCT GTGAGCCCCCTCTTCCTCTACCCACGTGATGGATCCCGATCCCGATCTCG ATCCCGATTCGGTGAACAGCGAGAGGCGCTGGAGGCCAGGCTGAGGTGGG TGCTGGCGGGTAGGCTGCGATTGGCGATAGAAAATGCGACAGGATACGCG CTCGACGATCTGGACGACGACGACACCGGATCAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig122369:1108..1693+

>mRNA_H-elongata_contig122369.1711.1 ID=mRNA_H-elongata_contig122369.1711.1|Name=mRNA_H-elongata_contig122369.1711.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig122369:1108..1693+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGGAACGGTCCCGACCGCGCACACGTGCGATAATGTCCTGGAGGT
GCCGAACTACTGGGCCCTTTTGATGCGAGCCGAAGGGTGGGAGTGGTCGA
TAGCATCCTCGCGGAGTGCAACCCTGCCAGATCTTACGCCGGAAAAGGTA
ATCCCTCGGAACGGTCCCGACCGCGCACACGTGCGATAATGTCCTGGAGG
TGCCGAACTACTGGGCCCTTTTGATGCGAGCCGAAGGGTGGGAGTGGTCG
ATAGCATCCTCGCGGAGTGCAACCCTGCCAGATCTTACGCCGGAAAAGGT
AAAGGCGCTGGAGGCCAGGCTGAGGTGGGTGCTGGCGGGTAGGCTGCGAT
TGGCGATAGAAAATGCGACAGGATACGCGCTCGACGATCTGGACGACGAC
GACACCGGATCAGACAGGCGCTGGAGGCCAGGCTGAGGTGGGTGCTGGCG
GGTAGGCTGCGATTGGCGATAGAAAATGCGACAGGATACGCGCTCGACGA
TCTGGACGACGACGACACCGGATCAGAC
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