mRNA_H-elongata_contig95794.16978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95794.16978.1
Unique NamemRNA_H-elongata_contig95794.16978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.280e-22
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 MEHEQQNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVALKNTWGVVE 249
            M  E + G  +Y DPL+WWR+    FP LA LARR+LAIPA+QA+SER+FS AG +VT+ RN L    VELLV L+++W +VE
Sbjct:  209 MYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVE 291          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.530e-21
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 MEHEQQNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVALKNTWGVVE 249
            M+      K ++ +PL+ WR   +++P LAALARR+LAIP+SQAQSERVFS+AG  VT TR+RL  +NVELLV L+N WGVV+
Sbjct:  469 MQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVD 551          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.550e-17
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   13 QQNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVALKNT 234
            ++ G+ +   PL WWR+   ++P LA+LARR+L IPA QAQSERVFSSAG +VT+TR R+  +NV L+V L+NT
Sbjct:  470 EEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: UPI000C26C2C9 (zinc finger BED domain-containing protein 4-like n=3 Tax=Drosophila willistoni TaxID=7260 RepID=UPI000C26C2C9)

HSP 1 Score: 75.5 bits (184), Expect = 2.320e-15
Identity = 35/82 (42.68%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 EHEQQNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVALKNTWGVVE 249
            ++ +QN      DPL++W++N ++F  LA  A+++L IP S  +SERVFS AG++V+Q R+RL  K V +L+ALK    ++E
Sbjct:   78 QYLEQNNATQDVDPLDYWKINEIQFGQLAKCAKKILCIPGSSVESERVFSKAGEIVSQKRSRLKPKAVNMLLALKQNQWILE 159          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 74.3 bits (181), Expect = 7.940e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   16 QNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELL 216
            QN  +I     +WW+ N V+FP LAA+AR LLAIPA+Q  SER+FS+AG +V + R+RL S+NVE+L
Sbjct:   99 QNTNVI-----SWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612)

HSP 1 Score: 73.2 bits (178), Expect = 1.020e-14
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 MEHEQQNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVALK 228
            + +E  +G  +  DPL WW+ N  K+P LA +AR  LA+P +   SERVFS+AG +VT  R+ L+ +NV++L+ LK
Sbjct:   53 VSYEAASGIPVDGDPLTWWKSNECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILMFLK 128          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 73.6 bits (179), Expect = 1.680e-14
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 MEHEQQNGKIIYPDPLN-----WWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVAL 225
            +E E QN     P PLN     WW++N ++FP LA LARR L IPA+   SERVFS+AG  VT+ R+RLT  +V +L+ L
Sbjct:   88 IEAELQNFLRETPPPLNCTPTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFL 167          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: A0A2G9RVU8_LITCT (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RVU8_LITCT)

HSP 1 Score: 74.3 bits (181), Expect = 2.070e-14
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   19 NGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVALK 228
            N   +  DPL WW+ N  K+P +A +AR  LA+P S   SERVFS+AG +VT TR+ L+  NV++LV LK
Sbjct:  146 NSITVDSDPLTWWKSNECKYPHIATMARCYLAVPGSSVPSERVFSTAGDIVTATRSTLSPDNVDILVFLK 215          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: A0A8C1EL35_CYPCA (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1EL35_CYPCA)

HSP 1 Score: 75.5 bits (184), Expect = 4.280e-14
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 MEHEQQNGKIIYPDPLN-----WWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVAL 225
            +E E QN     P PLN     WW++N ++FP LA LARR L IPA+   SERVFS+AG  VT+ R+RLTS +V +L+ L
Sbjct:  395 IEAELQNFLRETPPPLNCTPTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTSDHVNMLIFL 474          
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Match: A0A6P7FJL1_DIAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FJL1_DIAVI)

HSP 1 Score: 70.1 bits (170), Expect = 6.090e-14
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   40 DPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVFSSAGQMVTQTRNRLTSKNVELLVAL-KNTW 237
            DPL +W++NT  F P+  L+++ L IPAS  +SER FS+AGQ+V+  R+R+  KNV++LV + KN W
Sbjct:   22 DPLLFWKVNTNDFEPMLELSKKYLCIPASSVESERTFSTAGQIVSDRRSRIKPKNVDMLVFINKNQW 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95794.16978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.280e-2255.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI1.530e-2157.83Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE2.550e-1755.41Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI000C26C2C92.320e-1542.68zinc finger BED domain-containing protein 4-like n... [more]
UPI000EAB1B8F7.940e-1555.22zinc finger BED domain-containing protein 1-like n... [more]
UPI00109FC6121.020e-1444.74zinc finger BED domain-containing protein 4-like n... [more]
UPI0007B8209D1.680e-1450.00zinc finger BED domain-containing protein 1-like n... [more]
A0A2G9RVU8_LITCT2.070e-1450.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Li... [more]
A0A8C1EL35_CYPCA4.280e-1451.25Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cy... [more]
A0A6P7FJL1_DIAVI6.090e-1449.25zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95794contigH-elongata_contig95794:905..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931352.0442798-CDS-H-elongata_contig95794:904..11531622931352.0442798-CDS-H-elongata_contig95794:904..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95794 905..1153 -
1691679801.5776134-CDS-H-elongata_contig95794:904..11531691679801.5776134-CDS-H-elongata_contig95794:904..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95794 905..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95794.16978.1prot_H-elongata_contig95794.16978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95794 905..1153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95794.16978.1

>prot_H-elongata_contig95794.16978.1 ID=prot_H-elongata_contig95794.16978.1|Name=mRNA_H-elongata_contig95794.16978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MEHEQQNGKIIYPDPLNWWRLNTVKFPPLAALARRLLAIPASQAQSERVF
SSAGQMVTQTRNRLTSKNVELLVALKNTWGVVE
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mRNA from alignment at H-elongata_contig95794:905..1153-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95794.16978.1 ID=mRNA_H-elongata_contig95794.16978.1|Name=mRNA_H-elongata_contig95794.16978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig95794:905..1153- (Himanthalia elongata Himel1 dioecious)
ATGGAACATGAGCAGCAGAACGGCAAGATTATTTACCCCGACCCGCTGAA TTGGTGGAGGTTGAACACCGTCAAGTTTCCACCGCTAGCGGCGCTTGCCC GGCGCCTTTTGGCCATCCCAGCATCGCAGGCGCAGTCAGAGCGTGTGTTC TCGAGCGCTGGGCAGATGGTCACCCAAACGCGCAACCGCCTGACATCGAA AAACGTCGAGCTTCTGGTCGCGTTGAAGAACACTTGGGGTGTGGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig95794:905..1153-

>mRNA_H-elongata_contig95794.16978.1 ID=mRNA_H-elongata_contig95794.16978.1|Name=mRNA_H-elongata_contig95794.16978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig95794:905..1153- (Himanthalia elongata Himel1 dioecious)
ATGGAACATGAGCAGCAGAACGGCAAGATTATTTACCCCGACCCGCTGAA
TTGGTGGAGGTTGAACACCGTCAAGTTTCCACCGCTAGCGGCGCTTGCCC
GGCGCCTTTTGGCCATCCCAGCATCGCAGGCGCAGTCAGAGCGTGTGTTC
TCGAGCGCTGGGCAGATGGTCACCCAAACGCGCAACCGCCTGACATCGAA
AAACGTCGAGCTTCTGGTCGCGTTGAAGAACACTTGGGGTGTGGTGGAGA
TGGAACATGAGCAGCAGAACGGCAAGATTATTTACCCCGACCCGCTGAAT
TGGTGGAGGTTGAACACCGTCAAGTTTCCACCGCTAGCGGCGCTTGCCCG
GCGCCTTTTGGCCATCCCAGCATCGCAGGCGCAGTCAGAGCGTGTGTTCT
CGAGCGCTGGGCAGATGGTCACCCAAACGCGCAACCGCCTGACATCGAAA
AACGTCGAGCTTCTGGTCGCGTTGAAGAACACTTGGGGTGTGGTGGAG
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