mRNA_H-elongata_contig122151.1697.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.010e-45 Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYP--ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
L+W GD GPQ D NNH Q T + G+M+RI VPS G+GY +PS NY L EICAIGFRN WRC FDR TD+LYCGDVG ++E I+ VECGNNYGW RFEGSRC
Sbjct: 256 LYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRC 362
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 157 bits (397), Expect = 7.710e-43 Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNY--PELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
++W GD Q D NHGQ T L GS++RI VP+ GTGYE+P+ N P LPEICA GFRN WRC FDR TDELYCGDVG +E I+ VECGNNYGW RFEGSRC
Sbjct: 256 IYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASPALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRC 362
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 157 bits (396), Expect = 1.170e-42 Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYP--ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
L+W GD GPQ D NH Q T + G+M+RI VPS G GY +PS NY L EICAIGFRN WRC FDR D LYCGDVG ++E I+ VECGNNYGW RFEGSRC
Sbjct: 319 LYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRC 425
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 150 bits (380), Expect = 9.900e-42 Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYP-ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
L+W GD GPQ D NH Q + G+M+RI VP+ GTGY +P NY EICAIG RN WRC FDRL D+LYCGDVGQ E IN VECGNNYGW RFEGSRC
Sbjct: 247 LYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHGSKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRC 352
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 139 bits (351), Expect = 2.880e-37 Identity = 60/94 (63.83%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 37 DTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELP-EICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
D NH Q + G+M+RI VPS GTGY +P NYP E+CAIG RN WRCGFDRL D LYCGDVG +E IN +ECGNNYGW RFEGSRC
Sbjct: 209 DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAKAEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRC 302
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 135 bits (339), Expect = 1.270e-34 Identity = 63/112 (56.25%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPS--QGTGYEVPSDN-----YPELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
++W +GD GPQ D +N Q L GS+VRI VPS GTGYE+P+ N E PEICA G RN RC FD TDELYCGDVGQ+ +E +N +ECG +YGW FEGSRC
Sbjct: 324 IYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGNPFDGANGEKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRC 435
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI) HSP 1 Score: 131 bits (329), Expect = 2.840e-33 Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQ-GTGYEVPSDNYPE----LPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
LFWA+GD+GPQ DT + GQ ++L GS++RI V S+ +GY +PS N EICA G RN +RC FDRL D+LYCGDVG +ESI +ECGNNYGW +FEG RC
Sbjct: 309 LFWAMGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSGGGGRGEICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRC 418
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 127 bits (320), Expect = 2.230e-32 Identity = 60/106 (56.60%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELP-EICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
L+W GD GPQ D NH Q GTGY +P NY EICAIG RN WRC FDRL D+LYCGDVGQ +E IN +ECGNNYGW RFEGSRC
Sbjct: 174 LYWTTGDGGPQTDPFNHSQ----------------DGTGYTIPPGNYHGAKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRC 263
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.960e-31 Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELP-EICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVE 270
L+W GD GPQ D NH Q + G+M+RI VP+ GTGY +PS NYP E+CAIG RN WRCGFDRL D+LYCGDVG +E IN +E
Sbjct: 273 LYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPSGNYPGAKAEVCAIGLRNPWRCGFDRLNDDLYCGDVGHTLVEEINFIE 363
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 117 bits (292), Expect = 2.770e-28 Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQ-GTGYEVPSDNYPELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
LFWA+GD+GPQ DT++ GQ ++L GS++RI V S+ G+G + G RN +RC FDRL D+LYCGDVG +ESI +ECGNNYGW +FEG RC
Sbjct: 224 LFWAMGDSGPQLDTSDRGQDPNILHGSIIRIEVSSEMGSGDKE--------------GMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRC 315 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig122151.1697.1 >prot_H-elongata_contig122151.1697.1 ID=prot_H-elongata_contig122151.1697.1|Name=mRNA_H-elongata_contig122151.1697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELback to top mRNA from alignment at H-elongata_contig122151:7..1107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig122151.1697.1 ID=mRNA_H-elongata_contig122151.1697.1|Name=mRNA_H-elongata_contig122151.1697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-elongata_contig122151:7..1107- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig122151:7..1107- >mRNA_H-elongata_contig122151.1697.1 ID=mRNA_H-elongata_contig122151.1697.1|Name=mRNA_H-elongata_contig122151.1697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig122151:7..1107- (Himanthalia elongata Himel1 dioecious)back to top |