mRNA_H-elongata_contig122151.1697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig122151.1697.1
Unique NamemRNA_H-elongata_contig122151.1697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.010e-45
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYP--ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            L+W  GD GPQ D NNH Q T  + G+M+RI VPS G+GY +PS NY    L EICAIGFRN WRC FDR TD+LYCGDVG  ++E I+ VECGNNYGW RFEGSRC
Sbjct:  256 LYWTTGDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRC 362          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 7.710e-43
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNY--PELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            ++W  GD   Q D  NHGQ T  L GS++RI VP+ GTGYE+P+ N   P LPEICA GFRN WRC FDR TDELYCGDVG   +E I+ VECGNNYGW RFEGSRC
Sbjct:  256 IYWTTGDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLASPALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRC 362          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.170e-42
Identity = 68/107 (63.55%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYP--ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            L+W  GD GPQ D  NH Q T  + G+M+RI VPS G GY +PS NY    L EICAIGFRN WRC FDR  D LYCGDVG  ++E I+ VECGNNYGW RFEGSRC
Sbjct:  319 LYWTTGDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRC 425          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 9.900e-42
Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYP-ELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            L+W  GD GPQ D  NH Q    + G+M+RI VP+ GTGY +P  NY     EICAIG RN WRC FDRL D+LYCGDVGQ   E IN VECGNNYGW RFEGSRC
Sbjct:  247 LYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHGSKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRC 352          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.880e-37
Identity = 60/94 (63.83%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   37 DTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELP-EICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            D  NH Q    + G+M+RI VPS GTGY +P  NYP    E+CAIG RN WRCGFDRL D LYCGDVG   +E IN +ECGNNYGW RFEGSRC
Sbjct:  209 DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAKAEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRC 302          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.270e-34
Identity = 63/112 (56.25%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPS--QGTGYEVPSDN-----YPELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            ++W +GD GPQ D +N  Q    L GS+VRI VPS   GTGYE+P+ N       E PEICA G RN  RC FD  TDELYCGDVGQ+ +E +N +ECG +YGW  FEGSRC
Sbjct:  324 IYWTVGDGGPQNDPDNKAQDMTNLHGSIVRISVPSTAMGTGYEIPAGNPFDGANGEKPEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRC 435          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.840e-33
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQ-GTGYEVPSDNYPE----LPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            LFWA+GD+GPQ DT + GQ  ++L GS++RI V S+  +GY +PS N         EICA G RN +RC FDRL D+LYCGDVG   +ESI  +ECGNNYGW +FEG RC
Sbjct:  309 LFWAMGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSGGGGRGEICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRC 418          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.230e-32
Identity = 60/106 (56.60%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELP-EICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            L+W  GD GPQ D  NH Q                 GTGY +P  NY     EICAIG RN WRC FDRL D+LYCGDVGQ  +E IN +ECGNNYGW RFEGSRC
Sbjct:  174 LYWTTGDGGPQTDPFNHSQ----------------DGTGYTIPPGNYHGAKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRC 263          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.960e-31
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPELP-EICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVE 270
            L+W  GD GPQ D  NH Q    + G+M+RI VP+ GTGY +PS NYP    E+CAIG RN WRCGFDRL D+LYCGDVG   +E IN +E
Sbjct:  273 LYWTTGDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPSGNYPGAKAEVCAIGLRNPWRCGFDRLNDDLYCGDVGHTLVEEINFIE 363          
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.770e-28
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQ-GTGYEVPSDNYPELPEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRFEGSRC 315
            LFWA+GD+GPQ DT++ GQ  ++L GS++RI V S+ G+G +               G RN +RC FDRL D+LYCGDVG   +ESI  +ECGNNYGW +FEG RC
Sbjct:  224 LFWAMGDSGPQLDTSDRGQDPNILHGSIIRIEVSSEMGSGDKE--------------GMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRC 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig122151.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZF5_9PHAE2.010e-4565.42GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6T7_ECTSI7.710e-4364.49WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4P3_ECTSI1.170e-4263.55Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G962_ECTSI9.900e-4263.21GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KT40_9PHAE2.880e-3763.83GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJP1_ECTSI1.270e-3456.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN8_ECTSI2.840e-3356.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G960_ECTSI2.230e-3256.60Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G957_ECTSI3.960e-3158.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS07_9PHAE2.770e-2851.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig122151contigH-elongata_contig122151:7..1107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.6e-36
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig122151.1697.1prot_H-elongata_contig122151.1697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig122151 7..1107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929719.1872556-CDS-H-elongata_contig122151:6..521622929719.1872556-CDS-H-elongata_contig122151:6..52Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122151 7..52 -
1691679131.3886-CDS-H-elongata_contig122151:6..521691679131.3886-CDS-H-elongata_contig122151:6..52Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122151 7..52 -
1622929719.2006037-CDS-H-elongata_contig122151:177..3011622929719.2006037-CDS-H-elongata_contig122151:177..301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122151 178..301 -
1691679131.3986986-CDS-H-elongata_contig122151:177..3011691679131.3986986-CDS-H-elongata_contig122151:177..301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122151 178..301 -
1622929719.2115383-CDS-H-elongata_contig122151:962..11071622929719.2115383-CDS-H-elongata_contig122151:962..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122151 963..1107 -
1691679131.4085152-CDS-H-elongata_contig122151:962..11071691679131.4085152-CDS-H-elongata_contig122151:962..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig122151 963..1107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig122151.1697.1

>prot_H-elongata_contig122151.1697.1 ID=prot_H-elongata_contig122151.1697.1|Name=mRNA_H-elongata_contig122151.1697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
LFWALGDAGPQEDTNNHGQRTDVLFGSMVRILVPSQGTGYEVPSDNYPEL
PEICAIGFRNIWRCGFDRLTDELYCGDVGQNYIESINNVECGNNYGWVRF
EGSRC
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mRNA from alignment at H-elongata_contig122151:7..1107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig122151.1697.1 ID=mRNA_H-elongata_contig122151.1697.1|Name=mRNA_H-elongata_contig122151.1697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-elongata_contig122151:7..1107- (Himanthalia elongata Himel1 dioecious)
CTGTTCTGGGCCCTGGGAGACGCCGGTCCGCAAGAGGATACAAATAACCA TGGTCAGCGCACGGATGTCTTATTCGGGTCTATGGTCCGAATTCTTGTGC CTTCTCAAGGGACGGGTTACGAAGTTCCAAGTGACAACTATCCGGGTGCA GGTCAGTGATAGTCATGACTTAGAGTTACGATAAACCATATCTGCCATAG ACGGGCATGATTCATGCGCCATGACCGATATATATATATATATATGTTAC ACCATGAGCGCATTGTTAGTCGGCTATTTGGATAAAGTGTGATCTGTAGA ACGAGTCTTAAAATATCTGGGTAAATCAATGAAAACCTCCCTATTGTTGC CAAGCCGTCCGTGTGTAGCTTTGAAGTTATCATGGACGGCCGCAAGCAAC TTGTGGTGGATTTTAGCGAGTATGAACTATAATTCGCTCTATGGCTTTGC CTCAGAGTCCCCCCAGTTAATGTTCCTCGAAAGAGACGTTAATGCATGTC TAGAAGAGATGGAGCTAGAAAGGACGAGATGGATGAGGATGGATGCACAG TGAATATTTTCCAAATAGGCGGCACCAAGAGTGAAATTGATATTTTCGAA GCTGCTGGAGCAGAATGTCGTCCGTATCCAGGCTAATTAGAGACGCCGTC AAATGGATCGGAACTAGTTAAGGGTAGTCGCCTGTATAAAGTAGGAAATA AGGGAACTGTAACGTTTCAAGAAATGCCCAAGAAGCGCGTAGTACGAAGA TATTCTAGTTTCAACTTTACGAACCCCTTGAACCGGATCCTCTCGCCGAC ATGCAGAATTGCCCGAGATCTGTGCCATTGGTTTCCGCAATATCTGGAGG TGTGGCTTTGATCGCCTCACTGATGAGCTCTACTGCGGGGATGTCGGCCA AAATTATATCGAAAGCATCAACAACGTTGAGTGAGTAACGGCGACTGAAG GTTCTACTCGTCAAACATTCCTTATCTGCATTATTCAAAATGATTCATGC CCTACGATAATCTATTTGGCTGAACAATACTGATAAATAGTACTCGCTTT GGCAGGTGCGGCAACAACTACGGCTGGGTGCGATTTGAAGGATCGCGCTG C
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Coding sequence (CDS) from alignment at H-elongata_contig122151:7..1107-

>mRNA_H-elongata_contig122151.1697.1 ID=mRNA_H-elongata_contig122151.1697.1|Name=mRNA_H-elongata_contig122151.1697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig122151:7..1107- (Himanthalia elongata Himel1 dioecious)
CTGTTCTGGGCCCTGGGAGACGCCGGTCCGCAAGAGGATACAAATAACCA
TGGTCAGCGCACGGATGTCTTATTCGGGTCTATGGTCCGAATTCTTGTGC
CTTCTCAAGGGACGGGTTACGAAGTTCCAAGTGACAACTATCCGGCTGTT
CTGGGCCCTGGGAGACGCCGGTCCGCAAGAGGATACAAATAACCATGGTC
AGCGCACGGATGTCTTATTCGGGTCTATGGTCCGAATTCTTGTGCCTTCT
CAAGGGACGGGTTACGAAGTTCCAAGTGACAACTATCCGGAATTGCCCGA
GATCTGTGCCATTGGTTTCCGCAATATCTGGAGGTGTGGCTTTGATCGCC
TCACTGATGAGCTCTACTGCGGGGATGTCGGCCAAAATTATATCGAAAGC
ATCAACAACGTTGAAATTGCCCGAGATCTGTGCCATTGGTTTCCGCAATA
TCTGGAGGTGTGGCTTTGATCGCCTCACTGATGAGCTCTACTGCGGGGAT
GTCGGCCAAAATTATATCGAAAGCATCAACAACGTTGAGTGCGGCAACAA
CTACGGCTGGGTGCGATTTGAAGGATCGCGCTGCGTGCGGCAACAACTAC
GGCTGGGTGCGATTTGAAGGATCGCGCTGC
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