mRNA_H-elongata_contig94862.16901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94862.16901.1
Unique NamemRNA_H-elongata_contig94862.16901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.760e-26
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIVTVRGVVAFGVLDKY 267
            EVLRYRG+  ++P  NPL WW+   ATF LL EL+ R+L +PASSA+ ERLFSKA L  T  R+ L G RVAQ+VT+RG VA GVLDKY
Sbjct:  486 EVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLVTLRGAVAAGVLDKY 574          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A1A8HNA6_NOTKU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8HNA6_NOTKU)

HSP 1 Score: 59.7 bits (143), Expect = 5.500e-10
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   22 MPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIV 225
            MP++DP  +PL+WW++  + F  L  LA + LSIPA+SA  ERLFS A  V T  R  LK   V +++
Sbjct:    2 MPEVDPDTDPLQWWKSNKSNFSRLSHLAKKYLSIPATSAPSERLFSVAGGVVTCSRACLKPEAVDRLI 69          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A1A8RC75_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8RC75_9TELE)

HSP 1 Score: 62.0 bits (149), Expect = 5.940e-10
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIV 225
            E+  Y  +P++DP  +PL+WW++  + F  L  LA + LSIPA+SA  ERLFS A  V T  R  LK   V +++
Sbjct:   88 ELATYLLLPEVDPDTDPLQWWKSNTSNFSRLSHLAKKYLSIPATSAPSERLFSVAGGVVTCSRACLKPEAVDRLI 162          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: UPI000DC13F08 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13F08)

HSP 1 Score: 62.4 bits (150), Expect = 1.160e-9
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIVTVR 234
            E  RY   P+++  ENP  WW+  +  +  +  LA ++L IPASSAS ER+FS+A  + T  RNK+    ++ +V ++
Sbjct:  162 EFTRYLSEPQINHNENPCLWWKARENVYPTISVLAKKILCIPASSASSERVFSRAGNIITPKRNKMTPHHLSALVFLK 239          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A6J1T6I8_FRAOC (uncharacterized protein LOC113213631 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T6I8_FRAOC)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-9
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKE--NPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIVTVRGV 240
            E+ RY  MP  + K+  NP+E+ ET    F  + E+A  VL I A+S   ERLFS A L+ T LRN+L G +V ++V +R V
Sbjct:  326 ELQRYLDMPNCNRKKFPNPIEYLETIKDKFPYIYEVAREVLPIVATSTPCERLFSHAGLIFTQLRNRLHGSKVDELVFLRSV 407          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A1A8NAT3_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8NAT3_9TELE)

HSP 1 Score: 62.0 bits (149), Expect = 1.320e-9
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIV 225
            E+  Y  +P++DP  +PL+WW++  + F  L  LA + LSIPA+SA  ERLFS A  V T  R  LK   V +++
Sbjct:  143 ELATYLLLPEVDPDTDPLQWWKSNKSNFSRLSHLAKKYLSIPATSAPSERLFSVAGGVVTCSRACLKPEAVDRLI 217          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: UPI001BD4F48F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD4F48F)

HSP 1 Score: 61.6 bits (148), Expect = 4.320e-9
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIV 225
            EV  Y  MP +  +++PL+WW+  +  F  L +LA +VL +PA+S S ERLFS +  + T  R+ L   ++  +V
Sbjct:  445 EVSAYTSMPTIPVEKDPLQWWKANEDEFPRLAKLARKVLCVPATSVSSERLFSSSGNIQTVFRSSLTPDKLNMLV 519          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: UPI0014461CE7 (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014461CE7)

HSP 1 Score: 59.7 bits (143), Expect = 4.340e-9
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIV 225
            E+  Y     LD +ENPL+WW      +  L +LA + LSIPA+SA  ER+FS    + T LR+ LK   V ++V
Sbjct:   85 ELQSYLQCADLDSEENPLDWWREHQRVYPRLSKLAKKYLSIPATSAPSERVFSTGGNIVTCLRSSLKPESVDRLV 159          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A836J761_9HYME (ZBED1 protein (Fragment) n=1 Tax=Acromyrmex insinuator TaxID=230686 RepID=A0A836J761_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 9.540e-9
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIVTVRGV 240
            E+ +Y     +    NPLE+W+T  A +  L ++A + L++ A+S   ERLFSKA L+ +++RN+LK  R+  +  ++ V
Sbjct:  233 ELRQYLHQSVIPRHSNPLEYWQTLKAVYPTLFKIAKQYLAVVATSVPTERLFSKAGLIKSDIRNRLKSSRLNSLFFLQSV 312          
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Match: A0A151IMY6_9HYME (Zinc finger BED domain-containing protein 4 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151IMY6_9HYME)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-8
Identity = 27/80 (33.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAELVSTNLRNKLKGPRVAQIVTVRGV 240
            E+ +Y     +    NPL++W+T  A + +L ++A + L++ A+S   ERLFSKA L+ +++RN+LK  R+  ++ ++ V
Sbjct:  216 ELRQYLHQSVIPRHSNPLQYWQTLKAIYPILFKIAKQYLAVVATSVPAERLFSKAGLIKSDIRNRLKPSRLNSLLFLQSV 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94862.16901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE1.760e-2661.80Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A1A8HNA6_NOTKU5.500e-1045.59Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A8RC75_9TELE5.940e-1042.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI000DC13F081.160e-937.18zinc finger BED domain-containing protein 1-like n... [more]
A0A6J1T6I8_FRAOC1.200e-943.90uncharacterized protein LOC113213631 n=1 Tax=Frank... [more]
A0A1A8NAT3_9TELE1.320e-942.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI001BD4F48F4.320e-937.33E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cheilinu... [more]
UPI0014461CE74.340e-941.33zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A836J761_9HYME9.540e-935.00ZBED1 protein (Fragment) n=1 Tax=Acromyrmex insinu... [more]
A0A151IMY6_9HYME1.220e-833.75Zinc finger BED domain-containing protein 4 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94862contigH-elongata_contig94862:678..947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.944122-CDS-H-elongata_contig94862:677..9261622931343.944122-CDS-H-elongata_contig94862:677..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94862 678..926 -
1691679798.111643-CDS-H-elongata_contig94862:677..9261691679798.111643-CDS-H-elongata_contig94862:677..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94862 678..926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.9643185-UTR-H-elongata_contig94862:926..9471622931343.9643185-UTR-H-elongata_contig94862:926..947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94862 927..947 -
1691679798.1256626-UTR-H-elongata_contig94862:926..9471691679798.1256626-UTR-H-elongata_contig94862:926..947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94862 927..947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94862.16901.1prot_H-elongata_contig94862.16901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94862 678..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94862.16901.1

>prot_H-elongata_contig94862.16901.1 ID=prot_H-elongata_contig94862.16901.1|Name=mRNA_H-elongata_contig94862.16901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MPKLDPKENPLEWWETTDATFLLLCELATRVLSIPASSASPERLFSKAEL
VSTNLRNKLKGPRVAQIVTVRGVVAFGVLDKY*
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mRNA from alignment at H-elongata_contig94862:678..947-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94862.16901.1 ID=mRNA_H-elongata_contig94862.16901.1|Name=mRNA_H-elongata_contig94862.16901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig94862:678..947- (Himanthalia elongata Himel1 dioecious)
GAGGTGCTCAGGTACCGCGGTATGCCCAAGCTTGACCCGAAGGAGAACCC GCTCGAGTGGTGGGAGACAACAGACGCAACATTCCTTCTTCTCTGTGAGC TGGCAACACGTGTCCTCTCTATCCCGGCTTCGTCCGCGTCGCCGGAGCGC CTGTTCTCCAAGGCAGAGCTCGTCTCGACGAACTTACGGAACAAGCTGAA GGGACCAAGGGTGGCCCAGATAGTGACCGTGCGTGGTGTCGTCGCTTTCG GGGTCCTTGACAAATACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig94862:678..947-

>mRNA_H-elongata_contig94862.16901.1 ID=mRNA_H-elongata_contig94862.16901.1|Name=mRNA_H-elongata_contig94862.16901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig94862:678..947- (Himanthalia elongata Himel1 dioecious)
ATGCCCAAGCTTGACCCGAAGGAGAACCCGCTCGAGTGGTGGGAGACAAC
AGACGCAACATTCCTTCTTCTCTGTGAGCTGGCAACACGTGTCCTCTCTA
TCCCGGCTTCGTCCGCGTCGCCGGAGCGCCTGTTCTCCAAGGCAGAGCTC
GTCTCGACGAACTTACGGAACAAGCTGAAGGGACCAAGGGTGGCCCAGAT
AGTGACCGTGCGTGGTGTCGTCGCTTTCGGGGTCCTTGACAAATACTAGA
TGCCCAAGCTTGACCCGAAGGAGAACCCGCTCGAGTGGTGGGAGACAACA
GACGCAACATTCCTTCTTCTCTGTGAGCTGGCAACACGTGTCCTCTCTAT
CCCGGCTTCGTCCGCGTCGCCGGAGCGCCTGTTCTCCAAGGCAGAGCTCG
TCTCGACGAACTTACGGAACAAGCTGAAGGGACCAAGGGTGGCCCAGATA
GTGACCGTGCGTGGTGTCGTCGCTTTCGGGGTCCTTGACAAATACTAG
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