mRNA_H-elongata_contig93859.16821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93859.16821.1
Unique NamemRNA_H-elongata_contig93859.16821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 4.290e-65
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVRFSQ 342
            R R  DP VGDK+EVSWEGRFRLESLDVFVGRSWWEATVV+K+ DG KY+IHYPGWDSNWDEWV R+RLRWPVDPSYLSTTF VR+ +EVWCTGTHVKGAWLQA VRQ++  Q
Sbjct:   95 RYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKM-DGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQ 206          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.450e-42
Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
            R+R  DP VGD +EV+W+G+FRLES+D++ G +WW A VVEK  +G +Y+IHYPGWDS WDEWV R+RLRW V+   L+   M  D +E+WC G++V GAWL+A VR+V+
Sbjct:  144 RARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVK 252          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.550e-41
Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
            R+R  DP VGD +EV+W+G+FRLES+D++ G +WW A VVEK  +G +Y+IHYPGWDS WDEWV R+RLRW V+   L+   M  D +E+WC G++V GAWL+A VR+V+
Sbjct:  266 RARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVK 374          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.390e-36
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   10 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPS---YLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
            R   PQVGD++EV+W G+FRLESL+VF G +WW A VV +  D  +Y++HYPGW+  WDEWV+R RLRW  D      L     V D +EVWC G HV GAWL+  V  +R
Sbjct:   65 RLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIR 175          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 9.050e-35
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   10 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVD---PSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
            R   PQVGD++EV+W G+FRLESL+++ G +WW A +VE   DG +Y++HYPGW++ WDE+V R RLRW  D            V D +E+WC GT+V GAWL+  V  +R
Sbjct:  110 RLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIR 220          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.420e-34
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVD---PSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 330
            + R  DP VGD+++V+W+G+FRLESL+V+ G +WW A VV+K      Y++HYPGW+  WDEWV R+RLRW  +              D +EVWC G HV GAWL+AVV +V
Sbjct:  151 KRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEV 262          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.460e-32
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKI---------GDGHK-------YRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
            + R  DP VGD +EV+W G+FRLESL+++ G +WW A VV+K+         G G K       Y++ +PGW+  WDEWV+R+RLRW    +  +     RD +EVWC   +V GAWL+A V+++R
Sbjct:  166 KQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADALKPRDFVEVWCGSQNVPGAWLEASVQKIR 291          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.350e-32
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEK--------------IGD--GHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 330
            R R  DP  GD++E++W GRFRLE L+V+ G +WW A VVEK              + D    KY++HY  WD+ WDEWV R++LRWPV P   +      D +EVWC+G+ V GAWL+AVV  V
Sbjct:  153 RQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPV-PEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAV 276          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.090e-24
Identity = 57/177 (32.20%), Postives = 74/177 (41.81%), Query Frame = 1
Query:   10 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGD----------------------------------------------------------------------GHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 330
            R  DP  GD++EV+W+GRFRLE L+V+ G +WW A V EK  +                                                                        +YR+HY  WDS WDEWV+R +LRWPV     + T  + D +EVWC+G  V GAWL+AVV  V
Sbjct:  207 RIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEKRPNDIASNEEDMIPPEQFPPQHIDNQVVPHEQNHEVDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTSKRYRVHYLNWDSRWDEWVSREQLRWPVQEGK-NCTIEIGDDVEVWCSGNTVPGAWLRAVVDAV 382          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S3Z4G2_9EUKA (Hypothetical protein n=4 Tax=Lotharella TaxID=74819 RepID=A0A7S3Z4G2_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.790e-21
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    7 SRFNDPQVGDKIEVSWEGRFRLESLDV-----FVGRSWWEATVVEKIGDGHK----------YRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFM-VRDKIEVWCTGTHVKGAWLQAVVRQV 330
            SR + P+VGD +EV W+G+F   +L       F G++WW+A+VV +  +  +          YR H+PGW+S WDEW+TR ++RWP    Y +   + V D +EV    T V   W++  V++V
Sbjct:  115 SRVSSPRVGDCVEVLWQGKFYSHTLGEHGTMGFEGKAWWQASVVAREPESGENGQQSDNQFYYRAHFPGWESKWDEWITRGQIRWPKPMDYQAELEIDVGDHVEVLLESTRVPSVWMEGDVKKV 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI95_ECTSI4.290e-6581.42F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D060_9STRA1.450e-4256.36F-box domain-containing protein n=1 Tax=Nannochlor... [more]
W7T606_9STRA1.550e-4156.36F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZI68_9STRA1.390e-3652.25Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA9.050e-3548.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FY36_ECTSI6.420e-3449.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A403_9STRA2.460e-3242.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2SC81_9STRA4.350e-3246.40Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3K1B0_9STRA4.090e-2432.20Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3Z4G2_9EUKA1.790e-2136.29Hypothetical protein n=4 Tax=Lotharella TaxID=7481... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93859contigH-elongata_contig93859:89..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue8e-52
Seed eggNOG ortholog2880.D8LI95
EggNOG OGs2D67V@1,2T127@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box and Chromo domain-like protein
Ec32 orthologEc-14_003660.1
Exons2
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931335.3088505-CDS-H-elongata_contig93859:88..2841622931335.3088505-CDS-H-elongata_contig93859:88..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93859 89..284 -
1691679794.6275942-CDS-H-elongata_contig93859:88..2841691679794.6275942-CDS-H-elongata_contig93859:88..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93859 89..284 -
1622931335.3289344-CDS-H-elongata_contig93859:797..9431622931335.3289344-CDS-H-elongata_contig93859:797..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93859 798..943 -
1691679794.638542-CDS-H-elongata_contig93859:797..9431691679794.638542-CDS-H-elongata_contig93859:797..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93859 798..943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93859.16821.1prot_H-elongata_contig93859.16821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93859 89..943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93859.16821.1

>prot_H-elongata_contig93859.16821.1 ID=prot_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
NRSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKY
RIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKG
AWLQAVVRQVRFSQ
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mRNA from alignment at H-elongata_contig93859:89..943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93859.16821.1 ID=mRNA_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig93859:89..943- (Himanthalia elongata Himel1 dioecious)
AACAGGTCCCGTTTCAACGACCCTCAGGTCGGCGACAAAATAGAGGTCTC GTGGGAGGGTCGCTTTCGCTTGGAGTCGTTGGACGTGTTCGTGGGAAGGT CGTGGTGGGAGGCGACTGTGGTAGAGAAGATCGGCGACGGTCACAAGTGA GCCACAAGTTTTGAAACAAGGAGTCGAGTCTTGGATATGGGGCTGTGGCT ATGACGGGGATAAATATTGGCGTGAAACTTGAACCCGTCGCTTTTTTTTT TCACAAACTGTATTCAGGCCGTCAAAAGTTCTGCAGAGCCATTTCTCGAA CCCAAGAATTAGTATCCATAGTAAATCCACATATCTATGAAAATGTTTCA ATAGTGATAAATTTCGTCATGGCCTTGAGGTTCAGCGCAGCCATTTAACT TAATGTGTTAGAGAGGCTAGCGCTCCGAAGAAAACAAACTATTTAAAATG ATGTAAATCGTGATCAAATTCAGCGGGATCTGCCGCAGCGTCTACTGTAA TTTTTCATGTTGCCTTGCGCTGCGCCTGCACTCATTACAGGAGCCAAGCG ATTACGTATCGTATCCGTATCCGTATGAACTGTTGCCAGAGAGGCAGCAA TAACAGTCGAGATCGCTCTTACCTCGCCACCTTCCTCGTACGGTACTAAA TTCTTTTAGGTACCGAATCCATTACCCTGGATGGGACAGCAATTGGGACG AGTGGGTCACCCGTAACCGTCTCAGGTGGCCCGTGGACCCTTCGTACCTA TCGACGACCTTCATGGTGCGCGATAAGATTGAGGTTTGGTGCACCGGCAC GCACGTGAAGGGAGCGTGGCTTCAGGCCGTAGTAAGACAGGTGCGGTTCT CACAG
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Coding sequence (CDS) from alignment at H-elongata_contig93859:89..943-

>mRNA_H-elongata_contig93859.16821.1 ID=mRNA_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig93859:89..943- (Himanthalia elongata Himel1 dioecious)
AACAGGTCCCGTTTCAACGACCCTCAGGTCGGCGACAAAATAGAGGTCTC
GTGGGAGGGTCGCTTTCGCTTGGAGTCGTTGGACGTGTTCGTGGGAAGGT
CGTGGTGGGAGGCGACTGTGGTAGAGAAGATCGGCGACGGTCACAAAACA
GGTCCCGTTTCAACGACCCTCAGGTCGGCGACAAAATAGAGGTCTCGTGG
GAGGGTCGCTTTCGCTTGGAGTCGTTGGACGTGTTCGTGGGAAGGTCGTG
GTGGGAGGCGACTGTGGTAGAGAAGATCGGCGACGGTCACAAGTACCGAA
TCCATTACCCTGGATGGGACAGCAATTGGGACGAGTGGGTCACCCGTAAC
CGTCTCAGGTGGCCCGTGGACCCTTCGTACCTATCGACGACCTTCATGGT
GCGCGATAAGATTGAGGTTTGGTGCACCGGCACGCACGTGAAGGGAGCGT
GGCTTCAGGCCGTAGTAAGACAGGTGCGGTTCTCACAGGTACCGAATCCA
TTACCCTGGATGGGACAGCAATTGGGACGAGTGGGTCACCCGTAACCGTC
TCAGGTGGCCCGTGGACCCTTCGTACCTATCGACGACCTTCATGGTGCGC
GATAAGATTGAGGTTTGGTGCACCGGCACGCACGTGAAGGGAGCGTGGCT
TCAGGCCGTAGTAAGACAGGTGCGGTTCTCACAG
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