prot_H-elongata_contig93859.16821.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig93859.16821.1
Unique Nameprot_H-elongata_contig93859.16821.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 4.290e-65
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 0
Query:    2 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVRFSQ 114
            R R  DP VGDK+EVSWEGRFRLESLDVFVGRSWWEATVV+K+ DG KY+IHYPGWDSNWDEWV R+RLRWPVDPSYLSTTF VR+ +EVWCTGTHVKGAWLQA VRQ++  Q
Sbjct:   95 RYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKM-DGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQ 206          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.450e-42
Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 0
Query:    2 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 111
            R+R  DP VGD +EV+W+G+FRLES+D++ G +WW A VVEK  +G +Y+IHYPGWDS WDEWV R+RLRW V+   L+   M  D +E+WC G++V GAWL+A VR+V+
Sbjct:  144 RARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVK 252          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.550e-41
Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 0
Query:    2 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 111
            R+R  DP VGD +EV+W+G+FRLES+D++ G +WW A VVEK  +G +Y+IHYPGWDS WDEWV R+RLRW V+   L+   M  D +E+WC G++V GAWL+A VR+V+
Sbjct:  266 RARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVK 374          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.390e-36
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    4 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPS---YLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 111
            R   PQVGD++EV+W G+FRLESL+VF G +WW A VV +  D  +Y++HYPGW+  WDEWV+R RLRW  D      L     V D +EVWC G HV GAWL+  V  +R
Sbjct:   65 RLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIR 175          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 9.050e-35
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    4 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVD---PSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 111
            R   PQVGD++EV+W G+FRLESL+++ G +WW A +VE   DG +Y++HYPGW++ WDE+V R RLRW  D            V D +E+WC GT+V GAWL+  V  +R
Sbjct:  110 RLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIR 220          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.420e-34
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    2 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVD---PSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 110
            + R  DP VGD+++V+W+G+FRLESL+V+ G +WW A VV+K      Y++HYPGW+  WDEWV R+RLRW  +              D +EVWC G HV GAWL+AVV +V
Sbjct:  151 KRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEV 262          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.460e-32
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 0
Query:    2 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKI---------GDGHK-------YRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 111
            + R  DP VGD +EV+W G+FRLESL+++ G +WW A VV+K+         G G K       Y++ +PGW+  WDEWV+R+RLRW    +  +     RD +EVWC   +V GAWL+A V+++R
Sbjct:  166 KQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADALKPRDFVEVWCGSQNVPGAWLEASVQKIR 291          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.350e-32
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0
Query:    2 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEK--------------IGD--GHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 110
            R R  DP  GD++E++W GRFRLE L+V+ G +WW A VVEK              + D    KY++HY  WD+ WDEWV R++LRWPV P   +      D +EVWC+G+ V GAWL+AVV  V
Sbjct:  153 RQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPV-PEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAV 276          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.090e-24
Identity = 57/177 (32.20%), Postives = 74/177 (41.81%), Query Frame = 0
Query:    4 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGD----------------------------------------------------------------------GHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 110
            R  DP  GD++EV+W+GRFRLE L+V+ G +WW A V EK  +                                                                        +YR+HY  WDS WDEWV+R +LRWPV     + T  + D +EVWC+G  V GAWL+AVV  V
Sbjct:  207 RIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEKRPNDIASNEEDMIPPEQFPPQHIDNQVVPHEQNHEVDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTSKRYRVHYLNWDSRWDEWVSREQLRWPVQEGK-NCTIEIGDDVEVWCSGNTVPGAWLRAVVDAV 382          
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S3Z4G2_9EUKA (Hypothetical protein n=4 Tax=Lotharella TaxID=74819 RepID=A0A7S3Z4G2_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.790e-21
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 0
Query:    3 SRFNDPQVGDKIEVSWEGRFRLESLDV-----FVGRSWWEATVVEKIGDGHK----------YRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFM-VRDKIEVWCTGTHVKGAWLQAVVRQV 110
            SR + P+VGD +EV W+G+F   +L       F G++WW+A+VV +  +  +          YR H+PGW+S WDEW+TR ++RWP    Y +   + V D +EV    T V   W++  V++V
Sbjct:  115 SRVSSPRVGDCVEVLWQGKFYSHTLGEHGTMGFEGKAWWQASVVAREPESGENGQQSDNQFYYRAHFPGWESKWDEWITRGQIRWPKPMDYQAELEIDVGDHVEVLLESTRVPSVWMEGDVKKV 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI95_ECTSI4.290e-6581.42F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D060_9STRA1.450e-4256.36F-box domain-containing protein n=1 Tax=Nannochlor... [more]
W7T606_9STRA1.550e-4156.36F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A835ZI68_9STRA1.390e-3652.25Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA9.050e-3548.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FY36_ECTSI6.420e-3449.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A403_9STRA2.460e-3242.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2SC81_9STRA4.350e-3246.40Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3K1B0_9STRA4.090e-2432.20Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3Z4G2_9EUKA1.790e-2136.29Hypothetical protein n=4 Tax=Lotharella TaxID=7481... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 4..79
e-value: 1.6E-13
score: 52.2
IPR025995RNA binding activity-knot of a chromodomainPFAMPF11717Tudor-knotcoord: 33..71
e-value: 4.1E-6
score: 26.6
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 11..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93859contigH-elongata_contig93859:89..943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93859.16821.1mRNA_H-elongata_contig93859.16821.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig93859 89..943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig93859.16821.1 ID=prot_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
NRSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKY
RIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKG
AWLQAVVRQVRFSQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025995Tudor-knot
IPR016197Chromo-like_dom_sf