mRNA_H-elongata_contig93794.16813.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: D7G099_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G099_ECTSI) HSP 1 Score: 302 bits (774), Expect = 8.590e-91 Identity = 180/355 (50.70%), Postives = 221/355 (62.25%), Query Frame = 1
Query: 1 FSCSGDGELHLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVC-----GGEGFMAAGNGGGGRQGKRTPPRSLA--------------------GMKAPRQS-------DRSWADNK-----------------SSRAKQGQRIDEVKEP-------------FQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
F+ S + L L RF ++ QIS+QK++NF+ V +RY N FHNLTHA SVTHA F I+KTT+++SLLRPLDKL LL AAFCHDIDHPGNNNAYEVN+LSPLAL H DSSVLERHH+ V YQVLLE+GGANNI S LTR QF++VRQ ++QAIL TDMS HMQHCA++ QK+K + G G A+ +G RQGK RSL+ G+++ R S D D+ SS A++ R + P LFSVDKAEDR FL+KTI+HCADLSGQV+DNHLA+EWGRRI++EF+LQA
Sbjct: 695 FNLSSEQLLSLVGRFFRNMELTDRFQISDQKMQNFVRGVERRYRPNSFHNLTHAVSVTHASFTIVKTTQVNSLLRPLDKLALLVAAFCHDIDHPGNNNAYEVNSLSPLALQHGDSSVLERHHVFVTYQVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKKLAAFRGRGCPGGRASASGAASRQGKGRAGRSLSPVAMMETHGEGGAAEARGGVGLRSTRASCPPPGGGDGDGVDSPAKKRSKSAAIANGLPGCSSGARKNTRGRSMSPPPLTPXXXXXXXXXEHLFSVDKAEDRSFLTKTILHCADLSGQVLDNHLALEWGRRILDEFRLQA 1049
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A6H5KY22_9PHAE (Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY22_9PHAE) HSP 1 Score: 295 bits (756), Expect = 9.420e-89 Identity = 172/313 (54.95%), Postives = 211/313 (67.41%), Query Frame = 1
Query: 1 FSCSGDGELHLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVC--GGEG-----------FMAAGNG-GGGRQGK-RTPPRSLA-----GMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
F S L L RF ++ QI ++K+ +F+ AV +R+ N FHNLTHA SVTHA F I+KT+R DSLLRPLDKLGLL AAFCHDIDHPGNNNAYEVN++SPLAL + DSSVLERHH+ V YQVLLE+GGANNI S LTR QF++VRQ ++QAIL TDMS HMQHCA++ A K++ + GGEG A G G G R K T P++ A G+ + R + A + P +FSVDKAEDRLFL+KTI+HCADLSGQ++DNHLA+EWGRRI+EEF+LQA
Sbjct: 666 FDLSSQQLLSLVGRFFRSMELTDRFQIPDKKMWSFLRAVERRHPPNAFHNLTHAVSVTHASFTIVKTSRADSLLRPLDKLGLLVAAFCHDIDHPGNNNAYEVNSVSPLALQYGDSSVLERHHVFVTYQVLLEEGGANNIFSGLTRIQFRDVRQTIVQAILGTDMSGHMQHCADVFQFALKARRLAADGGEGQDGLLRVPQKKSQARGGGIGADRAAKSHTRPKAAAACDTSGLSEGMEGARGEGVVSLALAPVPLSVLPSPPPEHIFSVDKAEDRLFLTKTILHCADLSGQLLDNHLALEWGRRILEEFRLQA 978
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: D7G095_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G095_ECTSI) HSP 1 Score: 288 bits (736), Expect = 2.990e-87 Identity = 162/293 (55.29%), Postives = 196/293 (66.89%), Query Frame = 1
Query: 79 ISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEG-------------FMAAGNG-------GGGRQGKR------TPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
I ++K+ +F+ AV +RY N FHNLTHA SVTHA F I+KT+R DSLLRPLDKLGLL AAFCHDIDHPGNNNAYEVN++SPLAL + DSSVLERHH+ V YQVLLE+GGANNI S LTR QF++VRQ ++QAIL TDMS HMQHCA++ A K+K + G G F A G G R K T R +G + R + A+ + P + SVDKAEDR FL+KTI+HCADLSGQV+DNHLA+EWGRRI++EF+LQA
Sbjct: 435 IPDKKMWSFLRAVERRYPPNAFHNLTHAVSVTHASFTIVKTSRADSLLRPLDKLGLLVAAFCHDIDHPGNNNAYEVNSVSPLALQYGDSSVLERHHVFVTYQVLLEEGGANNIFSGLTRIQFRDVRQTIVQAILGTDMSGHMQHCADVFQFALKAKRLAAGGGERQDGLLRVPQKNFQAGGXXXXXXXXVGADRAAKSHTRPKATAARETSGFAEGMEGARGEGVVLLALARAPPSVLPSPPPEHILSVDKAEDRSFLTKTILHCADLSGQVLDNHLALEWGRRILDEFRLQA 727
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A5D6Y2B9_9STRA (Phosphodiesterase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2B9_9STRA) HSP 1 Score: 167 bits (422), Expect = 7.040e-43 Identity = 106/305 (34.75%), Postives = 166/305 (54.43%), Query Frame = 1
Query: 28 HLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEGFMAAGNG-------GGGRQGKRTPPRSLAGMK-APRQSDRSWAD---NKSSRAKQGQRIDEVKEPFQLFSVDKA----------EDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
+++ +++ R+++ IS Q+++NFI + + YH NPFHN HA SV H ++++ TT +LRPLD G L AA CHD+DHPG+ NAYE+ + S LA+L++D SVLERHH ++++ ++ AN I+ L+ ++ VR+V+I AIL TDM+ H + C L ++A NG G G + + ++ A QS+ S A+ N SS A + + K L + ++RLF+ KTI+H +DLSGQV +A++W I +EF QA
Sbjct: 593 NMFMKYNLPRVLN----ISQQRMQNFILVIKENYHPNPFHNFLHAFSVVHTAYLLLSTTEAARMLRPLDIAGCLIAALCHDVDHPGHTNAYEIQSGSQLAMLYSDESVLERHHAYTTFKLMSKEKSAN-ILENLSASDYRHVRKVIITAILGTDMANHFKFCETLEKTLNPPVRHISSSALVSAKNGLRHVEGFGSGSEKSSSSSEIRTVLRDAVFQSEGSAANTPRNSSSGAAKAKAFCFPKSLSGLSQTREVGNGWLYNGTVDERLFVVKTIVHASDLSGQVFSKPVALKWSNMISKEFAYQA 892
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A8K1CS64_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS64_PYTOL) HSP 1 Score: 160 bits (406), Expect = 9.750e-41 Identity = 103/291 (35.40%), Postives = 154/291 (52.92%), Query Frame = 1
Query: 94 LRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAEL--------------ADLAQKSKTVCGGEGF----MAAGNGGGGRQGK-----------RTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
+RNFI AV + YH NPFHN HA SV H+ + I+KTT+ +L+PLD L AA+CHD+DHPG+ N++E+ + S LALL++D SVLERHH ++++ D N I+ L+ F +R++++ AIL TDMS+H + C L A LA + +++ + MAA NG G + P S +G+ AP S + SRA I+ + ++R+FL K I+H +DL GQV +A++W + +EF QA
Sbjct: 668 MRNFILAVKESYHPNPFHNYLHAVSVLHSTYAILKTTKASQMLQPLDIAACLVAAYCHDVDHPGHTNSFEIVSKSQLALLYSDESVLERHHACTTFRIMSRDKNVN-ILQNLSAADFSYIRKMIVSAILGTDMSQHFKTCEALEKMLHPVPHSQMTSAALATRRESLSSSDAASVSKMAARNGDEGSSAEILSVVRDAVFHSDPSISTSGL-APT-CTASSTKSLPSRALACSSIESSHSSYDSVFNGTLDERVFLVKCIVHTSDLCGQVFPKPVALKWSNLVSKEFAYQA 955
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: K3WQH5_GLOUD (Phosphodiesterase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQH5_GLOUD) HSP 1 Score: 159 bits (402), Expect = 3.360e-40 Identity = 100/318 (31.45%), Postives = 156/318 (49.06%), Query Frame = 1
Query: 31 LYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELA--------------------DLAQKSKTVCGGEG---------------FMAAGNGGGGRQGKRTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
++ +FS +++ I+ Q ++NFI + YH NPFHN HA SV H ++++ TT +LRPLD G L AA CHD+DHPG+ N YE+ + S LA+L++D SVLERHH ++++ ++ AN I+ +L+ ++ +R+V+I AIL TDM+ H + C L D GGE F + G+ +G + S +G P+ S + + G + ++RLF+ KTI+H +DLSGQV +A++W I +EF QA
Sbjct: 701 MFMQFSLPKVLG----ITKQTMQNFIMVIKDNYHPNPFHNFLHAFSVVHTAYLLLSTTEASRMLRPLDIAGCLIAALCHDVDHPGHTNGYEIASGSQLAMLYSDESVLERHHAYTTFKLISKEKNAN-ILEKLSAADYRHIRKVIITAILGTDMANHFKFCETLEKTLNPATRHLSANTMPSMKKDSKPSDVVPAGGEKASSCTEIRNVLREAVFQSDGSAASTPRGSNSNSSSASGFYFPKSLSGSSQSSCTRELGNGWTFNGT-----------VDERLFIVKTIVHASDLSGQVFSKPVALKWSNMISKEFAYQA 1002
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A835YJJ2_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ2_9STRA) HSP 1 Score: 158 bits (399), Expect = 9.140e-40 Identity = 82/162 (50.62%), Postives = 108/162 (66.67%), Query Frame = 1
Query: 127 YHANPFHNLTHATSVTHAVFMIIKTTR-IDSLLRPLDKLGLLTAAFCHDIDHPGNNNA------------------YEVNTLSPLALLHADSSVLERHHIAVAYQVLLED-GGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTV 552
Y+ PFHN HA SV H FM+ +T + L PLD + L AAFCHD+DHPGNNNA +EVN+ SPLALLHAD +VLERHH+ V +++LLE+ GGANNI+S L+R QF E R+V+++AIL+TDMS+H+ HCA A L ++K +
Sbjct: 1176 YNPQPFHNFDHAFSVAHVTFMMFETAADVKRHLAPLDLISGLIAAFCHDLDHPGNNNAXXXXXXXXXXXXXXXXXAFEVNSRSPLALLHADDAVLERHHVHVTFKILLEEAGGANNILSRLSRAQFTESRKVIVRAILSTDMSQHLDHCARAARLLSRAKLL 1337
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A024UQT8_9STRA (Phosphodiesterase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQT8_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.220e-38 Identity = 98/281 (34.88%), Postives = 142/281 (50.53%), Query Frame = 1
Query: 76 QISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEGFMAAGNGGGGRQGKRTPPRSLAGMKAPRQSDR-------SWADNKSSRAKQGQRIDEVK------EPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
+I LR F+ V YH NPFHN H SV H + I+ T +L PLD+L L A+ CHDIDHPG++N +E+++ SPLAL H D +VLERHH A ++ LL+D N + + + F+ VR+ +++AIL TDM+ H L Q T +P + + P S S D+ S G+ +DE+ P+++F + +DRLFL K ++H ADLS QV H+A++W I +EF QA
Sbjct: 510 EIDVPTLRAFLQVVHDHYHPNPFHNFQHGFSVLHVSYRILSDTHAGRVLHPLDRLACLVASLCHDIDHPGHSNLFEIHSNSPLALTHNDDAVLERHHAATTFR-LLQDPRVN-VFAAFSTSDFRYVRKAIVRAILGTDMAIHNDTIDALVSRFQPLPTAM-------------------SPVKGITDHIHPALSSSHSSSASTSSGDSCSPIETNGEPLDELSIPPSPPPPWRVFE-NSEDDRLFLVKAVVHAADLSAQVFPKHIALKWSNMIAKEFAYQA 768
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A5A8DZF5_CAFRO (Phosphodiesterase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZF5_CAFRO) HSP 1 Score: 152 bits (384), Expect = 8.510e-38 Identity = 108/297 (36.36%), Postives = 150/297 (50.51%), Query Frame = 1
Query: 79 ISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLA-------QKSKTVCGGE---GFMAAGNGGGG----------RQGKRTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQR----------IDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
+ L+ F+ V +YHANPFHN HA +V A F+I+ TR +L +D L AA CHDIDHPG +N + + T + LALLH D + LERHH A A +L + ++ + L P + VR+V++ AILATDMS+HM H LAD A Q + G + G + A GG R PP +L+ SD S ++ A G+R + V F D DRL L ++++H ADLSGQ +A++WGR I+EEFQ +A
Sbjct: 843 VKESTLQAFVAEVRSKYHANPFHNWLHAVAVMQASFLILVHTRAAGMLSYVDIFACLVAALCHDIDHPGTSNGFLIATEAKLALLHNDDAPLERHHSATAAALLQQK--ELDVFASLDAPSRKRVRKVMVGAILATDMSKHMGHIQSLADRAARVAARAQAAAEEVGADLLDGRLTASPGGASAMSPTVSPLQRSSSLEPP-ALSRALTSTSSDNSLRAARNQLATLGRRASAAGSSAPMLRSVALALAPFDRDSPADRLALVESVVHTADLSGQAFPIPIALKWGRGIVEEFQHEA 1136
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: T0QAR6_SAPDV (Phosphodiesterase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QAR6_SAPDV) HSP 1 Score: 143 bits (361), Expect = 8.600e-35 Identity = 69/154 (44.81%), Postives = 101/154 (65.58%), Query Frame = 1
Query: 61 ISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAEL 522
+ LP + ++NFI +V YH NPFHN H SV H + I+K T+ ++L P D+ G L A+ CHDIDHPG++N +EVN+ S LALLH D +VLERHH A +++L D NI++ LT +++ R+V+++AI+ TDM+RH +H L
Sbjct: 505 VMALPNLDPDIVQNFIQSVQDHYHPNPFHNFLHGFSVLHTSYCILKETQAVTVLTPPDRFGCLLASLCHDIDHPGHSNVFEVNSKSGLALLHNDDAVLERHHAATTFRLLQNDHV--NILAGLTPDEYRYTRKVIVRAIIGTDMARHFEHIEAL 656 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig93794.16813.1 >prot_H-elongata_contig93794.16813.1 ID=prot_H-elongata_contig93794.16813.1|Name=mRNA_H-elongata_contig93794.16813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp FSCSGDGELHLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNback to top mRNA from alignment at H-elongata_contig93794:44..2498+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig93794.16813.1 ID=mRNA_H-elongata_contig93794.16813.1|Name=mRNA_H-elongata_contig93794.16813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2455bp|location=Sequence derived from alignment at H-elongata_contig93794:44..2498+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig93794:44..2498+ >mRNA_H-elongata_contig93794.16813.1 ID=mRNA_H-elongata_contig93794.16813.1|Name=mRNA_H-elongata_contig93794.16813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig93794:44..2498+ (Himanthalia elongata Himel1 dioecious)back to top |