mRNA_H-elongata_contig93794.16813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93794.16813.1
Unique NamemRNA_H-elongata_contig93794.16813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: D7G099_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G099_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 8.590e-91
Identity = 180/355 (50.70%), Postives = 221/355 (62.25%), Query Frame = 1
Query:    1 FSCSGDGELHLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVC-----GGEGFMAAGNGGGGRQGKRTPPRSLA--------------------GMKAPRQS-------DRSWADNK-----------------SSRAKQGQRIDEVKEP-------------FQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            F+ S +  L L  RF     ++   QIS+QK++NF+  V +RY  N FHNLTHA SVTHA F I+KTT+++SLLRPLDKL LL AAFCHDIDHPGNNNAYEVN+LSPLAL H DSSVLERHH+ V YQVLLE+GGANNI S LTR QF++VRQ ++QAIL TDMS HMQHCA++    QK+K +      G  G  A+ +G   RQGK    RSL+                    G+++ R S       D    D+                  SS A++  R   +  P               LFSVDKAEDR FL+KTI+HCADLSGQV+DNHLA+EWGRRI++EF+LQA
Sbjct:  695 FNLSSEQLLSLVGRFFRNMELTDRFQISDQKMQNFVRGVERRYRPNSFHNLTHAVSVTHASFTIVKTTQVNSLLRPLDKLALLVAAFCHDIDHPGNNNAYEVNSLSPLALQHGDSSVLERHHVFVTYQVLLEEGGANNIFSGLTRAQFRDVRQTIVQAILGTDMSGHMQHCADVFQCVQKAKKLAAFRGRGCPGGRASASGAASRQGKGRAGRSLSPVAMMETHGEGGAAEARGGVGLRSTRASCPPPGGGDGDGVDSPAKKRSKSAAIANGLPGCSSGARKNTRGRSMSPPPLTPXXXXXXXXXEHLFSVDKAEDRSFLTKTILHCADLSGQVLDNHLALEWGRRILDEFRLQA 1049          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A6H5KY22_9PHAE (Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY22_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 9.420e-89
Identity = 172/313 (54.95%), Postives = 211/313 (67.41%), Query Frame = 1
Query:    1 FSCSGDGELHLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVC--GGEG-----------FMAAGNG-GGGRQGK-RTPPRSLA-----GMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            F  S    L L  RF     ++   QI ++K+ +F+ AV +R+  N FHNLTHA SVTHA F I+KT+R DSLLRPLDKLGLL AAFCHDIDHPGNNNAYEVN++SPLAL + DSSVLERHH+ V YQVLLE+GGANNI S LTR QF++VRQ ++QAIL TDMS HMQHCA++   A K++ +   GGEG             A G G G  R  K  T P++ A     G+    +  R       + A     +     P  +FSVDKAEDRLFL+KTI+HCADLSGQ++DNHLA+EWGRRI+EEF+LQA
Sbjct:  666 FDLSSQQLLSLVGRFFRSMELTDRFQIPDKKMWSFLRAVERRHPPNAFHNLTHAVSVTHASFTIVKTSRADSLLRPLDKLGLLVAAFCHDIDHPGNNNAYEVNSVSPLALQYGDSSVLERHHVFVTYQVLLEEGGANNIFSGLTRIQFRDVRQTIVQAILGTDMSGHMQHCADVFQFALKARRLAADGGEGQDGLLRVPQKKSQARGGGIGADRAAKSHTRPKAAAACDTSGLSEGMEGARGEGVVSLALAPVPLSVLPSPPPEHIFSVDKAEDRLFLTKTILHCADLSGQLLDNHLALEWGRRILEEFRLQA 978          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: D7G095_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G095_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 2.990e-87
Identity = 162/293 (55.29%), Postives = 196/293 (66.89%), Query Frame = 1
Query:   79 ISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEG-------------FMAAGNG-------GGGRQGKR------TPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            I ++K+ +F+ AV +RY  N FHNLTHA SVTHA F I+KT+R DSLLRPLDKLGLL AAFCHDIDHPGNNNAYEVN++SPLAL + DSSVLERHH+ V YQVLLE+GGANNI S LTR QF++VRQ ++QAIL TDMS HMQHCA++   A K+K +  G G             F A G         G  R  K       T  R  +G     +  R       + A+    +     P  + SVDKAEDR FL+KTI+HCADLSGQV+DNHLA+EWGRRI++EF+LQA
Sbjct:  435 IPDKKMWSFLRAVERRYPPNAFHNLTHAVSVTHASFTIVKTSRADSLLRPLDKLGLLVAAFCHDIDHPGNNNAYEVNSVSPLALQYGDSSVLERHHVFVTYQVLLEEGGANNIFSGLTRIQFRDVRQTIVQAILGTDMSGHMQHCADVFQFALKAKRLAAGGGERQDGLLRVPQKNFQAGGXXXXXXXXVGADRAAKSHTRPKATAARETSGFAEGMEGARGEGVVLLALARAPPSVLPSPPPEHILSVDKAEDRSFLTKTILHCADLSGQVLDNHLALEWGRRILDEFRLQA 727          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A5D6Y2B9_9STRA (Phosphodiesterase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2B9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.040e-43
Identity = 106/305 (34.75%), Postives = 166/305 (54.43%), Query Frame = 1
Query:   28 HLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEGFMAAGNG-------GGGRQGKRTPPRSLAGMK-APRQSDRSWAD---NKSSRAKQGQRIDEVKEPFQLFSVDKA----------EDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            +++ +++  R+++    IS Q+++NFI  + + YH NPFHN  HA SV H  ++++ TT    +LRPLD  G L AA CHD+DHPG+ NAYE+ + S LA+L++D SVLERHH    ++++ ++  AN I+  L+   ++ VR+V+I AIL TDM+ H + C  L                ++A NG       G G +   +       ++ A  QS+ S A+   N SS A + +     K    L    +           ++RLF+ KTI+H +DLSGQV    +A++W   I +EF  QA
Sbjct:  593 NMFMKYNLPRVLN----ISQQRMQNFILVIKENYHPNPFHNFLHAFSVVHTAYLLLSTTEAARMLRPLDIAGCLIAALCHDVDHPGHTNAYEIQSGSQLAMLYSDESVLERHHAYTTFKLMSKEKSAN-ILENLSASDYRHVRKVIITAILGTDMANHFKFCETLEKTLNPPVRHISSSALVSAKNGLRHVEGFGSGSEKSSSSSEIRTVLRDAVFQSEGSAANTPRNSSSGAAKAKAFCFPKSLSGLSQTREVGNGWLYNGTVDERLFVVKTIVHASDLSGQVFSKPVALKWSNMISKEFAYQA 892          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A8K1CS64_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS64_PYTOL)

HSP 1 Score: 160 bits (406), Expect = 9.750e-41
Identity = 103/291 (35.40%), Postives = 154/291 (52.92%), Query Frame = 1
Query:   94 LRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAEL--------------ADLAQKSKTVCGGEGF----MAAGNGGGGRQGK-----------RTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            +RNFI AV + YH NPFHN  HA SV H+ + I+KTT+   +L+PLD    L AA+CHD+DHPG+ N++E+ + S LALL++D SVLERHH    ++++  D   N I+  L+   F  +R++++ AIL TDMS+H + C  L              A LA + +++   +      MAA NG  G   +             P  S +G+ AP     S   +  SRA     I+     +        ++R+FL K I+H +DL GQV    +A++W   + +EF  QA
Sbjct:  668 MRNFILAVKESYHPNPFHNYLHAVSVLHSTYAILKTTKASQMLQPLDIAACLVAAYCHDVDHPGHTNSFEIVSKSQLALLYSDESVLERHHACTTFRIMSRDKNVN-ILQNLSAADFSYIRKMIVSAILGTDMSQHFKTCEALEKMLHPVPHSQMTSAALATRRESLSSSDAASVSKMAARNGDEGSSAEILSVVRDAVFHSDPSISTSGL-APT-CTASSTKSLPSRALACSSIESSHSSYDSVFNGTLDERVFLVKCIVHTSDLCGQVFPKPVALKWSNLVSKEFAYQA 955          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: K3WQH5_GLOUD (Phosphodiesterase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQH5_GLOUD)

HSP 1 Score: 159 bits (402), Expect = 3.360e-40
Identity = 100/318 (31.45%), Postives = 156/318 (49.06%), Query Frame = 1
Query:   31 LYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELA--------------------DLAQKSKTVCGGEG---------------FMAAGNGGGGRQGKRTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            ++ +FS  +++     I+ Q ++NFI  +   YH NPFHN  HA SV H  ++++ TT    +LRPLD  G L AA CHD+DHPG+ N YE+ + S LA+L++D SVLERHH    ++++ ++  AN I+ +L+   ++ +R+V+I AIL TDM+ H + C  L                     D         GGE                F + G+     +G  +   S +G   P+    S   + +     G   +              ++RLF+ KTI+H +DLSGQV    +A++W   I +EF  QA
Sbjct:  701 MFMQFSLPKVLG----ITKQTMQNFIMVIKDNYHPNPFHNFLHAFSVVHTAYLLLSTTEASRMLRPLDIAGCLIAALCHDVDHPGHTNGYEIASGSQLAMLYSDESVLERHHAYTTFKLISKEKNAN-ILEKLSAADYRHIRKVIITAILGTDMANHFKFCETLEKTLNPATRHLSANTMPSMKKDSKPSDVVPAGGEKASSCTEIRNVLREAVFQSDGSAASTPRGSNSNSSSASGFYFPKSLSGSSQSSCTRELGNGWTFNGT-----------VDERLFIVKTIVHASDLSGQVFSKPVALKWSNMISKEFAYQA 1002          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A835YJJ2_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 9.140e-40
Identity = 82/162 (50.62%), Postives = 108/162 (66.67%), Query Frame = 1
Query:  127 YHANPFHNLTHATSVTHAVFMIIKTTR-IDSLLRPLDKLGLLTAAFCHDIDHPGNNNA------------------YEVNTLSPLALLHADSSVLERHHIAVAYQVLLED-GGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTV 552
            Y+  PFHN  HA SV H  FM+ +T   +   L PLD +  L AAFCHD+DHPGNNNA                  +EVN+ SPLALLHAD +VLERHH+ V +++LLE+ GGANNI+S L+R QF E R+V+++AIL+TDMS+H+ HCA  A L  ++K +
Sbjct: 1176 YNPQPFHNFDHAFSVAHVTFMMFETAADVKRHLAPLDLISGLIAAFCHDLDHPGNNNAXXXXXXXXXXXXXXXXXAFEVNSRSPLALLHADDAVLERHHVHVTFKILLEEAGGANNILSRLSRAQFTESRKVIVRAILSTDMSQHLDHCARAARLLSRAKLL 1337          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A024UQT8_9STRA (Phosphodiesterase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQT8_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.220e-38
Identity = 98/281 (34.88%), Postives = 142/281 (50.53%), Query Frame = 1
Query:   76 QISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEGFMAAGNGGGGRQGKRTPPRSLAGMKAPRQSDR-------SWADNKSSRAKQGQRIDEVK------EPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            +I    LR F+  V   YH NPFHN  H  SV H  + I+  T    +L PLD+L  L A+ CHDIDHPG++N +E+++ SPLAL H D +VLERHH A  ++ LL+D   N + +  +   F+ VR+ +++AIL TDM+ H      L    Q   T                     +P + +     P  S         S  D+ S     G+ +DE+        P+++F  +  +DRLFL K ++H ADLS QV   H+A++W   I +EF  QA
Sbjct:  510 EIDVPTLRAFLQVVHDHYHPNPFHNFQHGFSVLHVSYRILSDTHAGRVLHPLDRLACLVASLCHDIDHPGHSNLFEIHSNSPLALTHNDDAVLERHHAATTFR-LLQDPRVN-VFAAFSTSDFRYVRKAIVRAILGTDMAIHNDTIDALVSRFQPLPTAM-------------------SPVKGITDHIHPALSSSHSSSASTSSGDSCSPIETNGEPLDELSIPPSPPPPWRVFE-NSEDDRLFLVKAVVHAADLSAQVFPKHIALKWSNMIAKEFAYQA 768          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: A0A5A8DZF5_CAFRO (Phosphodiesterase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZF5_CAFRO)

HSP 1 Score: 152 bits (384), Expect = 8.510e-38
Identity = 108/297 (36.36%), Postives = 150/297 (50.51%), Query Frame = 1
Query:   79 ISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAELADLA-------QKSKTVCGGE---GFMAAGNGGGG----------RQGKRTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQR----------IDEVKEPFQLFSVDKAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA 879
            +    L+ F+  V  +YHANPFHN  HA +V  A F+I+  TR   +L  +D    L AA CHDIDHPG +N + + T + LALLH D + LERHH A A  +L +     ++ + L  P  + VR+V++ AILATDMS+HM H   LAD A       Q +    G +   G + A  GG            R     PP +L+       SD S    ++  A  G+R          +  V      F  D   DRL L ++++H ADLSGQ     +A++WGR I+EEFQ +A
Sbjct:  843 VKESTLQAFVAEVRSKYHANPFHNWLHAVAVMQASFLILVHTRAAGMLSYVDIFACLVAALCHDIDHPGTSNGFLIATEAKLALLHNDDAPLERHHSATAAALLQQK--ELDVFASLDAPSRKRVRKVMVGAILATDMSKHMGHIQSLADRAARVAARAQAAAEEVGADLLDGRLTASPGGASAMSPTVSPLQRSSSLEPP-ALSRALTSTSSDNSLRAARNQLATLGRRASAAGSSAPMLRSVALALAPFDRDSPADRLALVESVVHTADLSGQAFPIPIALKWGRGIVEEFQHEA 1136          
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Match: T0QAR6_SAPDV (Phosphodiesterase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QAR6_SAPDV)

HSP 1 Score: 143 bits (361), Expect = 8.600e-35
Identity = 69/154 (44.81%), Postives = 101/154 (65.58%), Query Frame = 1
Query:   61 ISLLPQISNQKLRNFIPAVGKRYHANPFHNLTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAYEVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQEVRQVVIQAILATDMSRHMQHCAEL 522
            +  LP +    ++NFI +V   YH NPFHN  H  SV H  + I+K T+  ++L P D+ G L A+ CHDIDHPG++N +EVN+ S LALLH D +VLERHH A  +++L  D    NI++ LT  +++  R+V+++AI+ TDM+RH +H   L
Sbjct:  505 VMALPNLDPDIVQNFIQSVQDHYHPNPFHNFLHGFSVLHTSYCILKETQAVTVLTPPDRFGCLLASLCHDIDHPGHSNVFEVNSKSGLALLHNDDAVLERHHAATTFRLLQNDHV--NILAGLTPDEYRYTRKVIVRAIIGTDMARHFEHIEAL 656          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93794.16813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G099_ECTSI8.590e-9150.70Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A6H5KY22_9PHAE9.420e-8954.95Phosphodiesterase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D7G095_ECTSI2.990e-8755.29Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A5D6Y2B9_9STRA7.040e-4334.75Phosphodiesterase n=1 Tax=Pythium brassicum TaxID=... [more]
A0A8K1CS64_PYTOL9.750e-4135.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WQH5_GLOUD3.360e-4031.45Phosphodiesterase n=1 Tax=Globisporangium ultimum ... [more]
A0A835YJJ2_9STRA9.140e-4050.62Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A024UQT8_9STRA2.220e-3834.88Phosphodiesterase n=2 Tax=Aphanomyces invadans Tax... [more]
A0A5A8DZF5_CAFRO8.510e-3836.36Phosphodiesterase n=4 Tax=Cafeteria roenbergensis ... [more]
T0QAR6_SAPDV8.600e-3544.81Phosphodiesterase n=2 Tax=Saprolegnia TaxID=4769 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93794contigH-elongata_contig93794:44..2498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.5
Seed ortholog evalue8.6e-82
Seed eggNOG ortholog2880.D7G099
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size882
Cds size882
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93794.16813.1prot_H-elongata_contig93794.16813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93794 44..2498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.1387954-CDS-H-elongata_contig93794:43..3271622931334.1387954-CDS-H-elongata_contig93794:43..327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 44..327 +
1691679794.229825-CDS-H-elongata_contig93794:43..3271691679794.229825-CDS-H-elongata_contig93794:43..327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 44..327 +
1622931334.1580944-CDS-H-elongata_contig93794:494..5941622931334.1580944-CDS-H-elongata_contig93794:494..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 495..594 +
1691679794.2397816-CDS-H-elongata_contig93794:494..5941691679794.2397816-CDS-H-elongata_contig93794:494..594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 495..594 +
1622931334.1757722-CDS-H-elongata_contig93794:853..11281622931334.1757722-CDS-H-elongata_contig93794:853..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 854..1128 +
1691679794.2486517-CDS-H-elongata_contig93794:853..11281691679794.2486517-CDS-H-elongata_contig93794:853..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 854..1128 +
1622931334.19446-CDS-H-elongata_contig93794:1913..20481622931334.19446-CDS-H-elongata_contig93794:1913..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 1914..2048 +
1691679794.263867-CDS-H-elongata_contig93794:1913..20481691679794.263867-CDS-H-elongata_contig93794:1913..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 1914..2048 +
1622931334.2120502-CDS-H-elongata_contig93794:2410..24981622931334.2120502-CDS-H-elongata_contig93794:2410..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 2411..2498 +
1691679794.2727664-CDS-H-elongata_contig93794:2410..24981691679794.2727664-CDS-H-elongata_contig93794:2410..2498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93794 2411..2498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93794.16813.1

>prot_H-elongata_contig93794.16813.1 ID=prot_H-elongata_contig93794.16813.1|Name=mRNA_H-elongata_contig93794.16813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
FSCSGDGELHLYPRFSARRMISLLPQISNQKLRNFIPAVGKRYHANPFHN
LTHATSVTHAVFMIIKTTRIDSLLRPLDKLGLLTAAFCHDIDHPGNNNAY
EVNTLSPLALLHADSSVLERHHIAVAYQVLLEDGGANNIMSELTRPQFQE
VRQVVIQAILATDMSRHMQHCAELADLAQKSKTVCGGEGFMAAGNGGGGR
QGKRTPPRSLAGMKAPRQSDRSWADNKSSRAKQGQRIDEVKEPFQLFSVD
KAEDRLFLSKTIMHCADLSGQVVDNHLAVEWGRRIIEEFQLQA*
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mRNA from alignment at H-elongata_contig93794:44..2498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93794.16813.1 ID=mRNA_H-elongata_contig93794.16813.1|Name=mRNA_H-elongata_contig93794.16813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2455bp|location=Sequence derived from alignment at H-elongata_contig93794:44..2498+ (Himanthalia elongata Himel1 dioecious)
TTCAGTTGTAGTGGTGATGGTGAACTGCATTTGTATCCACGCTTTTCCGC CCGCCGAATGATTTCTTTGCTGCCGCAGATATCGAACCAAAAATTACGTA ATTTTATCCCCGCGGTCGGCAAGCGATACCACGCCAACCCTTTCCACAAC CTCACACACGCCACGAGCGTTACTCATGCGGTTTTCATGATCATAAAGAC GACTCGGATAGACTCGCTGTTGCGACCTCTGGACAAGCTAGGTCTCCTGA CCGCCGCCTTTTGCCACGACATCGACCACCCCGGGTGAGAGCGTCGGTGT TGATATAATTGGCTGTGTAGGGTGTGCACATTCAGGGGTCATATGCCTTC CGATCCTCCTACTTTGGAGATTGAGTCGATTGAATAAGCGCTTCGTAGAC GCTCAACGAGTTTTCTCCGCTACACTCGACATTTGCGTACGCGGTCTCAA GGAACAACAACGCCTACGAGGTGAACACCCTCTCTCCGCTGGCGCTGTTA CACGCCGACAGTTCAGTCCTTGAGCGTCACCACATAGCTGTCGCGTACCA GGTAAGAGCTACAGCAGCCGTGGTCGCAGAGCTCTGTTAATGGGTGTATG CATCCATATCGAGCCACTGCTACTTTTCGCACCTGTTGGTAAACCATGCG CGCCCGGCATCGCGCTGTGAGCGCATTCCTCCCACGCTACACAGCGGCTT GTCTGCTGTGCGATTTGATCGATCGTTGGAGTATGGTGACGATGTATGAT CTTCGCGGTACATAGTTAATAAAGAAGTGTTAGACGATGCCGCGTGGGGG TACTCGACAGGTGCTGCTCGAGGACGGTGGGGCGAACAACATCATGTCAG AGTTGACCCGTCCCCAGTTCCAGGAGGTGCGCCAAGTTGTCATACAGGCC ATTCTCGCCACAGATATGTCAAGGCACATGCAGCACTGTGCCGAGCTCGC GGATTTGGCGCAAAAATCGAAGACAGTTTGCGGAGGGGAAGGATTTATGG CAGCGGGAAACGGTGGTGGTGGTAGGCAGGGCAAGAGAACCCCGCCTCGC TCGTTGGCTGGAATGAAGGCGCCTCGGCAAAGCGAGTGAGTCTAGTTACC TATTTCTCGGAAACACTCGCTGTCTACTACGGGGATTTTTTTTAACACGC GCCGATGCTGATATGCGCACCTTCTCTACATAGCGCGTATCGATCGATCT ATGAGGTCTGCTCTGGACCGTTTGAATACGCTGTGATCACAAGCAGATCA CGGACGACTCAGGATTTATTTTCAATCACCGTAAAATGCGCACCTCCCCG TCCTTGCAGACGGCGCATATGTATGCAAGATGTCTTCTGTGTGGGGCTAC AGGACCGCTCAGCTGAAGCTATTTACCGTAGCAATCTACGGTTTTGTTAC AAACCCATATTTCATGCCTTCCTTGCAACCCTTTGCGATTACGACTTTGT CGTCGTGTATTTCCTTCCTCAGAGAGTCACGAGTCGGGGTCGCATCTTCA GAGCTGGATATACTGAGGAAACCCCCGAGGCTCGAGCTCGCGTCGGCCGA GCAATCGCCACGGTCAGCGATACGTAGGGCCTCGAGGACCCAGGGAACGA GGCGGCGCAGTTTTCAAGGAGACTAGTAAGTGTTGATATGTTTTTCTTTC CCTCTCTTTTAATTATCCAGACATATAGATTGTAATGTCTTGTCTTGTCG GTCGGCGGTAGCAGCTTAAGATTCGAGCCACGGAAGCATATAATCGTCAA TTGTTGAGAAATTGTAGAGAAATCGAATTATCGCGAGAGGTCCATACCTT TACCGTGCTGCGGTGGGCTTAATCCGATAAATGTCTGGTCATTTTGCCGT GGCTGCCTGTGTGGGATCAGCCGAAGCTGGGCGGACAATAAATCATCACG CGCGAAGCAAGGGCAGAGGATCGACGAAGTCAAAGAACCGTTTCAATTAT TCAGTGTCGACAAGGCCGAGGATCGGTTATTCCTCTCCAAGACAATCATG CACTGGTGCGTGTGCAAACCAGCGAGTCGCATTGATCGGAGTCTTTGGAT TATCTTTCCCTCTAACCCTAACCCTAACCCTAACCGTTTGGTGCCTACTA GAATTACGAAGCCATAAGTGCGTCCGTCACGGCTTTTATATGTTGAAACA CATTTAAGCACTATACGATAATTATCACCCGGGGGTTAGTACAACATATT CCAGCTAGAATATCATATCTCTGCCACGATGGTGAAACCTCCCTCAATGG TCGAATTCGTCCCATGCTGTCCAAGAAGGGCGTGTCCACTCTGATCAGAG AAAGCACAAGAGTCTGATCCATGGGGGTTCGGTCTAACTCCGGATTGATG GCGTTCCTCGTCCTCAGTGCTGATCTCTCTGGTCAGGTGGTGGATAATCA TCTAGCGGTGGAGTGGGGCCGTAGGATCATTGAGGAATTCCAGTTGCAGG CATAG
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Coding sequence (CDS) from alignment at H-elongata_contig93794:44..2498+

>mRNA_H-elongata_contig93794.16813.1 ID=mRNA_H-elongata_contig93794.16813.1|Name=mRNA_H-elongata_contig93794.16813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig93794:44..2498+ (Himanthalia elongata Himel1 dioecious)
TTCAGTTGTAGTGGTGATGGTGAACTGCATTTGTATCCACGCTTTTCCGC
CCGCCGAATGATTTCTTTGCTGCCGCAGATATCGAACCAAAAATTACGTA
ATTTTATCCCCGCGGTCGGCAAGCGATACCACGCCAACCCTTTCCACAAC
CTCACACACGCCACGAGCGTTACTCATGCGGTTTTCATGATCATAAAGAC
GACTCGGATAGACTCGCTGTTGCGACCTCTGGACAAGCTAGGTCTCCTGA
CCGCCGCCTTTTGCCACGACATCGACCACCCCGGTTCAGTTGTAGTGGTG
ATGGTGAACTGCATTTGTATCCACGCTTTTCCGCCCGCCGAATGATTTCT
TTGCTGCCGCAGATATCGAACCAAAAATTACGTAATTTTATCCCCGCGGT
CGGCAAGCGATACCACGCCAACCCTTTCCACAACCTCACACACGCCACGA
GCGTTACTCATGCGGTTTTCATGATCATAAAGACGACTCGGATAGACTCG
CTGTTGCGACCTCTGGACAAGCTAGGTCTCCTGACCGCCGCCTTTTGCCA
CGACATCGACCACCCCGGGAACAACAACGCCTACGAGGTGAACACCCTCT
CTCCGCTGGCGCTGTTACACGCCGACAGTTCAGTCCTTGAGCGTCACCAC
ATAGCTGTCGCGTACCAGGAACAACAACGCCTACGAGGTGAACACCCTCT
CTCCGCTGGCGCTGTTACACGCCGACAGTTCAGTCCTTGAGCGTCACCAC
ATAGCTGTCGCGTACCAGGTGCTGCTCGAGGACGGTGGGGCGAACAACAT
CATGTCAGAGTTGACCCGTCCCCAGTTCCAGGAGGTGCGCCAAGTTGTCA
TACAGGCCATTCTCGCCACAGATATGTCAAGGCACATGCAGCACTGTGCC
GAGCTCGCGGATTTGGCGCAAAAATCGAAGACAGTTTGCGGAGGGGAAGG
ATTTATGGCAGCGGGAAACGGTGGTGGTGGTAGGCAGGGCAAGAGAACCC
CGCCTCGCTCGTTGGCTGGAATGAAGGCGCCTCGGCAAAGCGAGTGCTGC
TCGAGGACGGTGGGGCGAACAACATCATGTCAGAGTTGACCCGTCCCCAG
TTCCAGGAGGTGCGCCAAGTTGTCATACAGGCCATTCTCGCCACAGATAT
GTCAAGGCACATGCAGCACTGTGCCGAGCTCGCGGATTTGGCGCAAAAAT
CGAAGACAGTTTGCGGAGGGGAAGGATTTATGGCAGCGGGAAACGGTGGT
GGTGGTAGGCAGGGCAAGAGAACCCCGCCTCGCTCGTTGGCTGGAATGAA
GGCGCCTCGGCAAAGCGACCGAAGCTGGGCGGACAATAAATCATCACGCG
CGAAGCAAGGGCAGAGGATCGACGAAGTCAAAGAACCGTTTCAATTATTC
AGTGTCGACAAGGCCGAGGATCGGTTATTCCTCTCCAAGACAATCATGCA
CTGCCGAAGCTGGGCGGACAATAAATCATCACGCGCGAAGCAAGGGCAGA
GGATCGACGAAGTCAAAGAACCGTTTCAATTATTCAGTGTCGACAAGGCC
GAGGATCGGTTATTCCTCTCCAAGACAATCATGCACTGTGCTGATCTCTC
TGGTCAGGTGGTGGATAATCATCTAGCGGTGGAGTGGGGCCGTAGGATCA
TTGAGGAATTCCAGTTGCAGGCATAGTGCTGATCTCTCTGGTCAGGTGGT
GGATAATCATCTAGCGGTGGAGTGGGGCCGTAGGATCATTGAGGAATTCC
AGTTGCAGGCATAG
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