mRNA_H-elongata_contig12200.1681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12200.1681.1
Unique NamemRNA_H-elongata_contig12200.1681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: D8LF19_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF19_ECTSI)

HSP 1 Score: 561 bits (1447), Expect = 1.020e-194
Identity = 276/340 (81.18%), Postives = 308/340 (90.59%), Query Frame = 1
Query:  361 PAPAPAK-AVGLTPEEFCSSHKIMIKSDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKSDHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQVSFVY 1377
            PA  PA  A  LT  EFCS+HKI IKSD+D+F  P PM +F++TPFGGPIR ALKAAGYP PTPTQAQSWPIA+SGRDIISVARTGSGKTLGFLLPAFHA++NRPGG +   G GP+++VLAPTRELACQINEEATKFG+ +GIRSTTVYGG+PKYPQIKAI+SGVQVVIATPGRLNDI++MGKI+++NVMTLALDEADRMLDMGFEPQIRTII+A+P KRQTLFFTATWPKEVQRLARDFV +PVHITVGDAGKLNANKSI Q+I ++DERDK DKLWELLT+LH +PPK+DH KTIIFSSKKRNCDKLAQ AWDRGFAVDSLHGDREQWERT+V   Y
Sbjct:  108 PATEPAGGAPALTAAEFCSTHKIAIKSDDDSFDCPVPMSSFESTPFGGPIRGALKAAGYPAPTPTQAQSWPIALSGRDIISVARTGSGKTLGFLLPAFHALLNRPGGCKPRMG-GPYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQIKAIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAKRQTLFFTATWPKEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKLWELLTKLHENPPKADHGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMDQY 446          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A7S3H7A5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7A5_9STRA)

HSP 1 Score: 379 bits (974), Expect = 1.880e-123
Identity = 193/326 (59.20%), Postives = 247/326 (75.77%), Query Frame = 1
Query:  400 EEFCSSHKIMIK----SDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKSDHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQV 1365
            EEF S+H+I I     S + ++  P PM +F +TPF  PIR+AL AAG+P PTPTQAQSWPIA+SGRDII+VA+TGSGKT GFLLPAFH +++     R  RGA P ++VLAPTRELACQI EEA KFGR S IRS   YGGAPK  QI+ I++G++V+I TPGRLND+++MG ++L  V+ L LDEADRMLDMGFEPQIRTII  IP +RQ+LFFTATWP+EVQ LAR+F++ PV +  GD   LNANK+I Q I V  + +KSDKL E+L E++      +  K+IIF S+K +CD+LA   WD G++VD+LHGD++Q+ RT+V
Sbjct:   91 EEFRSTHQITINGLHSSGSGSYVPPAPMTSFASTPFAPPIRKALDAAGFPNPTPTQAQSWPIALSGRDIITVAKTGSGKTCGFLLPAFHLLLSAFEKGR-KRGA-PAIVVLAPTRELACQIEEEAIKFGRTSNIRSVCAYGGAPKSLQIRKIQAGIEVLICTPGRLNDLLEMGVVNLGQVLFLVLDEADRMLDMGFEPQIRTIISKIPLERQSLFFTATWPREVQTLAREFLKTPVELKFGDVNNLNANKAILQKIIVCSDNEKSDKLKEVLKEINPDNKPEEVPKSIIFVSRKSDCDRLANTLWDAGYSVDALHGDKQQFLRTRV 414          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A835YJ27_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ27_9STRA)

HSP 1 Score: 355 bits (911), Expect = 6.200e-115
Identity = 183/309 (59.22%), Postives = 228/309 (73.79%), Query Frame = 1
Query:  451 FAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPK--RQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKS--DHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQV 1365
            +  P P+++F A PF   I+ ALKAAG+  PTPTQAQSWP+ + GRD+ISVA+TGSGKTLGFLLPAFH +  +    +  +G GP +LVLAPTRELACQI +E+ KFGR + I+S  +YGGAPK+PQI+A+ +  QVVIATPGRLNDI  M KISL+NV  L LDEADRMLDMGFEPQIR I+  + PK  RQTLFFTATWPK VQ+LAR+F+ +PV + +G    L ANKSI Q I VI E DK D L ELL        +   +H K IIF+++KR CD+L++  W+ GF+VD+LHGD+EQ ERT V
Sbjct:   47 YEAPNPVISFGAAPFHPSIKTALKAAGFAAPTPTQAQSWPVVLQGRDLISVAKTGSGKTLGFLLPAFHRMQEKK--TQYFKGKGPSILVLAPTRELACQIYDESRKFGRLADIKSCCLYGGAPKWPQIQALATDPQVVIATPGRLNDIANMRKISLANVEFLVLDEADRMLDMGFEPQIREILGNMGPKTSRQTLFFTATWPKTVQKLAREFLSNPVQLNLGSGDSLQANKSISQTIAVIGEGDKEDALKELLASRSTVDKEGVMEHGKIIIFTARKRTCDELSRRLWNGGFSVDALHGDKEQRERTSV 353          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A0L0FLW3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLW3_9EUKA)

HSP 1 Score: 357 bits (915), Expect = 1.720e-114
Identity = 182/331 (54.98%), Postives = 231/331 (69.79%), Query Frame = 1
Query:  406 FCSSHKIMIKSDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIM----NRPGGMRVS--RGAGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKS-DHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQVSFVY 1377
            F   H I I      + +P PM+T+D+TPF G ++  L A+G+PGPT +QA SWPI + G+DII+VA+TGSGKTLGFL+P FH I+    N+ G  R    RG  P VLVLAPTRELACQI  EA KFG  +GIRS  +YGGAPKYPQI+AIE G QV+IATPGRL DI++M KIS+  +    LDEADRMLDMGF PQI  I+E +P ++QTLFFTATWPK VQ+LA   ++D V +  G   KL ANK+++QNI ++D   K D+L +LLTEL  +   +  H K IIF+++K  C+ L    W+ GFAVD LHGDREQ+ERT +   Y
Sbjct:  104 FMKEHDIKITPGTSTYDIPHPMLTWDSTPFSGKVKANLVASGFPGPTASQAMSWPIILGGQDIIAVAKTGSGKTLGFLVPCFHHIVTSKWNQGGDFRGQPRRGEPPKVLVLAPTRELACQIEAEAKKFGMTAGIRSVCLYGGAPKYPQIRAIEQGAQVIIATPGRLCDIMEMKKISVLGIECAILDEADRMLDMGFGPQITEIMEKLPKQKQTLFFTATWPKAVQKLANTLLKDAVQVNFGAVHKLQANKNVEQNIRIVDNHSKFDELKKLLTELSETEDAAKSHPKMIIFTARKHTCNDLGNQLWESGFAVDCLHGDREQFERTNIMKQY 434          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: B8BR52_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR52_THAPS)

HSP 1 Score: 343 bits (881), Expect = 1.670e-110
Identity = 183/331 (55.29%), Postives = 226/331 (68.28%), Query Frame = 1
Query:  391 LTPEEFCSSHKIMIK----SDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPK--RQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKSDHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQV 1365
            ++P E+   + I ++    S  D+F  P P + F   PF   I++ LK+AG+  PT  Q+Q+WPIAI+G D+I VA+TGSGKT GFLLP+FH             G GP +LVLAPTRELACQI +E  KFGR  GIRS   YGG+PKY QI A+E GV+ VIATPGRLND+I+M K +LSNV  + LDEADRMLDMGFEPQIR+I+ ++P    RQTL F+ATWPKE+QRLA DF+ DP+ I VG+   LNANK I Q I +  E DK D+L E+LT+L        H K I+F  KK    +LA   WD GFAVDSLHGDREQWERT+V
Sbjct:   17 ISPTEWRKENNITVRGYGSSAGDSF--PDPFIEFGDAPFSDSIQKTLKSAGFERPTFIQSQAWPIAINGSDMICVAKTGSGKTCGFLLPSFHQYFQSKATANKG-GKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQIAALERGVECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPDSTNRQTLLFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCSEDDKIDRLKEILTDLK-------HSKVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKV 337          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A7S2PL85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PL85_9STRA)

HSP 1 Score: 340 bits (872), Expect = 3.320e-109
Identity = 181/351 (51.57%), Postives = 233/351 (66.38%), Query Frame = 1
Query:  400 EEFCSSHKIMIKSD----NDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRG-AGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPP--KRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKSD----------------------HFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQV 1365
            EE+ ++H+I ++      N+ FA   P + FD  PF   I++ LKAAG+  PT  Q+Q+WPIA+ G D+IS+A+TGSGKT GFLLPAFH  +   G     R   GP ++VLAPTRELA QI +E  KFGR  GIRS   YGG+PKYPQI+A++ GV+ +IATPGR+ND+I+M K  LS V  + LDEADRMLDMGFEPQIR+I+  +P   KRQTL F+ATWPKE+Q+LA DF+ +PV I VG+   LNANK I QNI ++ + +K DKL E+LT+L  S  +S+                      H K I+F +KK    +LA   WD GFA DSLHGDR QWERT+V
Sbjct:    9 EEWRTAHQITVRGHGKRINEKFA--DPFIEFDDAPFNPVIQKTLKAAGFERPTLIQSQAWPIALQGTDLISIAKTGSGKTCGFLLPAFHNFLQTKGAPGNGRNFQGPMMIVLAPTRELAIQILDETQKFGRPIGIRSVCCYGGSPKYPQIQALQRGVECIIATPGRINDLIEMRKADLSGVKFVVLDEADRMLDMGFEPQIRSILSNVPEATKRQTLLFSATWPKEIQKLAFDFLNEPVQINVGEVNALNANKDITQNIIMLSDDEKLDKLKEILTQLVDSADESEEKSAPAPTGRFAPKPVDLGGKKHAKIIVFVAKKYVAHELANQLWDDGFACDSLHGDRAQWERTKV 357          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A7S0BVZ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVZ7_9STRA)

HSP 1 Score: 344 bits (882), Expect = 7.450e-109
Identity = 178/354 (50.28%), Postives = 226/354 (63.84%), Query Frame = 1
Query:  391 LTPEEFCSSHKI-MIKSDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAG--------------------------PFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPP--KSDHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQV 1365
            + P+++     I ++KS + +F  P P   F   PF   I++AL +AG+  PT  QAQ+WPIA++G D+I VA+TGSGKT GFLLP+ H  +     +  +   G                          P +LVLAPTRELA QI EE  KFGR  G+RS  +YGGAPKYPQI+A+  GV  VIATPGR+ND+I+MG+  LS +  + LDEADRMLDMGFEPQIR+++E +P KRQTL F+ATWPKE+QRLA DF+  P+ + VGD   LNANK IKQNI +  E +K  K   LL E+       K  H K IIF S+K +CD LA   W+ GFAVDSLHGDR QWERT+V
Sbjct:  120 INPDDWRKEQNITVVKSSDTSFQTPTPFYNFSDAPFNATIQRALTSAGFEKPTAIQAQAWPIALNGDDMICVAKTGSGKTCGFLLPSMHQYLKSGPNLTPASTGGRGSXXXXXXXXXXXXXXXXXXXXGTKPVLLVLAPTRELAVQIEEECKKFGRSVGLRSICLYGGAPKYPQIQALNRGVDFVIATPGRINDLIEMGRCDLSAIQFVVLDEADRMLDMGFEPQIRSVLEHVPEKRQTLLFSATWPKEIQRLAYDFLNTPIQVNVGDVNSLNANKDIKQNIHICMESEKFTKCTGLLKEMTSEENGGKEKHAKVIIFVSRKMSCDSLANELWEDGFAVDSLHGDRAQWERTKV 473          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: W4H177_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H177_9STRA)

HSP 1 Score: 336 bits (861), Expect = 2.210e-107
Identity = 174/330 (52.73%), Postives = 226/330 (68.48%), Query Frame = 1
Query:  388 GLTPEEFCSSHKIMIKSDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQINEEATKFGRGS-GIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKSD-----HFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERT 1359
            G +  ++ +SH I +   N  +A P P++ F  TPF   I + L+AAGY  PTPTQ+QSWPIA++ +D+ISVA+TGSGKT+GFLLP+FH IM +    R      P +LVLAPTRELA QI  EA KF R    +R+  V+GGAPKY Q+ ++ +GV  ++ATPGRLND IQM KI LS V  L LDEADRMLDMGFEPQIRTII+ IP  RQTL F+ATWPK +Q++AR+F+R+PV + +GD   L ANK I+Q I +  E +K DKL  L+ ++      ++     H KTI+F   KR C++L Q  WD G+AV  LHGD+EQ ERT
Sbjct:   33 GTSGAQWRASHTIEVIGSNGGYACPDPILAFKDTPFSPAIIKCLEAAGYTAPTPTQSQSWPIALAKQDMISVAKTGSGKTVGFLLPSFHHIMQQKTSCR-----DPRILVLAPTRELATQIEVEAKKFSRVQPALRTACVFGGAPKYNQLNSLAAGVDCLVATPGRLNDFIQMRKIDLSKVSILVLDEADRMLDMGFEPQIRTIIDQIPTNRQTLLFSATWPKSIQKMAREFLRNPVQVNMGDINVLQANKDIQQIIDICREDEKRDKLVTLMNQIVTMTDSANTDVTLHVKTIVFFRTKRTCERLGQEFWDAGYAVGCLHGDKEQHERT 357          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A1Z5K9Y7_FISSO (ATP-dependent RNA helicase DDX5/DBP2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9Y7_FISSO)

HSP 1 Score: 337 bits (864), Expect = 1.240e-106
Identity = 180/348 (51.72%), Postives = 228/348 (65.52%), Query Frame = 1
Query:  394 TPEEFCSSHKIMIKSDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRG-AGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATP-----------------GRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTEL------HGSPPKSDHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQV 1365
            +PE++ + H I +    DN  VP P   F  TPF   I Q  + AG+  P+  QAQSWPIA+ GRD+I++ARTGSGKTLGFLLP FH  + +    +  +G   P +LVLAPTREL+ QI EEA KFGR  GIRS   YGG+ K+PQI A+E GV+ VIATP                 GRLND+++M K+ L  V  L LDEADRMLDMGFEPQIRTI++ +P +RQTL F+ATWPKE+Q LA DF+++P+ I VG+   L ANK I+Q + V  + +K+DKL E+L EL       G P    H K I+F +KK +C  LA   WD G+AVDSLHGDR QWERT+V
Sbjct:   70 SPEDWRTEHSITVVGRFDNGEVPAPFREFSKTPFSERILQGFQKAGFSAPSAIQAQSWPIALQGRDMINIARTGSGKTLGFLLPCFHLHLQQH--KKPLQGFTPPMLLVLAPTRELSVQIMEEAQKFGRLLGIRSVCCYGGSSKWPQISALERGVECVIATPVVLTLPSFYSTPFHDYTGRLNDLLEMKKVHLEKVSFLVLDEADRMLDMGFEPQIRTIVKHLPKERQTLLFSATWPKEIQALANDFLKNPIQINVGEVNALVANKDIQQKVIVCMDHEKADKLAEILQELLKEGAETGPPGTKVHPKAIVFVAKKISCHDLANRLWDEGYAVDSLHGDRPQWERTRV 415          
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Match: A0A7S2YLW6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLW6_9STRA)

HSP 1 Score: 337 bits (863), Expect = 1.750e-106
Identity = 175/342 (51.17%), Postives = 223/342 (65.20%), Query Frame = 1
Query:  391 LTPEEFCSSHKIMIK---SDNDNFAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIISVARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQINEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQMGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWPKEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWELLTELHGSPPKSD----------HFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQWERTQVSFVY 1377
            LTPE++ + H I I+   ++      P P   F   PF   +++A   AG+  PT  Q+Q+WPIA+  +D+I +A+TGSGKT GFLLPAFH  + +    R      P +LVLAPTREL+ QI EEA KFGR  GIR+   YGGA KYPQI A+E GV+ VIATPGRLND+++M K  LS +  L LDEADRMLDMGFEPQIR+I+  +P  RQTL F+ATWP+E+Q LA DF+RDP+ I VG+   L ANK IKQ I +  + +K DKL ++L EL      +D          H K I+F +KK +C  LA   WD GFAVDSLHGDR QWERT+V   +
Sbjct:   91 LTPEQWRAEHHITIQGHGAERSTKEYPAPFKLFKEAPFNSRVQEAFAKAGFEKPTAIQSQAWPIALMNKDMICIAKTGSGKTCGFLLPAFHQHLEK--SERKQGYTPPMMLVLAPTRELSVQIMEEAQKFGRQLGIRTVCCYGGASKYPQISALERGVECVIATPGRLNDLLEMRKADLSKIQFLVLDEADRMLDMGFEPQIRSIVAKVPEVRQTLLFSATWPREIQALAHDFLRDPIQINVGEVNALVANKDIKQEIVMCRDDEKFDKLIDILKELTKEAEPADGPTPAGGGKHHAKVIVFVAKKISCHDLANRLWDDGFAVDSLHGDRAQWERTRVMTAF 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12200.1681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF19_ECTSI1.020e-19481.18DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3H7A5_9STRA1.880e-12359.20Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835YJ27_9STRA6.200e-11559.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0L0FLW3_9EUKA1.720e-11454.98Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
B8BR52_THAPS1.670e-11055.29Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2PL85_9STRA3.320e-10951.57Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S0BVZ7_9STRA7.450e-10950.28Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
W4H177_9STRA2.210e-10752.73Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A1Z5K9Y7_FISSO1.240e-10651.72ATP-dependent RNA helicase DDX5/DBP2 n=2 Tax=Fistu... [more]
A0A7S2YLW6_9STRA1.750e-10651.17Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12200contigH-elongata_contig12200:157..2981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score564.3
Seed ortholog evalue5.2e-158
Seed eggNOG ortholog2880.D8LF19
KEGG rclassRC02795
KEGG koko:K02325,ko:K12823
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03040,ko03410,ko03420,ko05166,ko05202,ko05205,map00230,map00240,map01100,map03030,map03040,map03410,map03420,map05166,map05202,map05205
KEGG ModuleM00263
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009628,GO:0009651,GO:0009987,GO:0010501,GO:0016070,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031974,GO:0031981,GO:0034641,GO:0036211,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046777,GO:0050896,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140096,GO:0140098,GO:1901360,GO:1901564
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC2.7.7.7,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-21_006390.1
Exons4
Model size1379
Cds size1377
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12200.1681.1prot_H-elongata_contig12200.1681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12200 157..2981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929718.1263688-CDS-H-elongata_contig12200:156..2851622929718.1263688-CDS-H-elongata_contig12200:156..285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 157..285 -
1691679130.9066055-CDS-H-elongata_contig12200:156..2851691679130.9066055-CDS-H-elongata_contig12200:156..285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 157..285 -
1622929718.1447115-CDS-H-elongata_contig12200:719..11591622929718.1447115-CDS-H-elongata_contig12200:719..1159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 720..1159 -
1691679130.9191642-CDS-H-elongata_contig12200:719..11591691679130.9191642-CDS-H-elongata_contig12200:719..1159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 720..1159 -
1622929718.1569355-CDS-H-elongata_contig12200:1387..21441622929718.1569355-CDS-H-elongata_contig12200:1387..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 1388..2144 -
1691679130.9374003-CDS-H-elongata_contig12200:1387..21441691679130.9374003-CDS-H-elongata_contig12200:1387..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 1388..2144 -
1622929718.172482-CDS-H-elongata_contig12200:2930..29811622929718.172482-CDS-H-elongata_contig12200:2930..2981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 2931..2981 -
1691679130.949935-CDS-H-elongata_contig12200:2930..29811691679130.949935-CDS-H-elongata_contig12200:2930..2981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12200 2931..2981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12200.1681.1

>prot_H-elongata_contig12200.1681.1 ID=prot_H-elongata_contig12200.1681.1|Name=mRNA_H-elongata_contig12200.1681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=459bp
PLNLHRILTEITMDANKAAAKNLKKLLKKKAKAASAEASAGRLRTPSMDL
ADVTNGRVRTSSMNSDEGIDGDTAKGAISPGRKSKKKREAGEEKYPTPKK
TKKSKKTEKVDDDVDPADVVPAPAPAKAVGLTPEEFCSSHKIMIKSDNDN
FAVPPPMVTFDATPFGGPIRQALKAAGYPGPTPTQAQSWPIAISGRDIIS
VARTGSGKTLGFLLPAFHAIMNRPGGMRVSRGAGPFVLVLAPTRELACQI
NEEATKFGRGSGIRSTTVYGGAPKYPQIKAIESGVQVVIATPGRLNDIIQ
MGKISLSNVMTLALDEADRMLDMGFEPQIRTIIEAIPPKRQTLFFTATWP
KEVQRLARDFVRDPVHITVGDAGKLNANKSIKQNICVIDERDKSDKLWEL
LTELHGSPPKSDHFKTIIFSSKKRNCDKLAQGAWDRGFAVDSLHGDREQW
ERTQVSFVY
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mRNA from alignment at H-elongata_contig12200:157..2981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12200.1681.1 ID=mRNA_H-elongata_contig12200.1681.1|Name=mRNA_H-elongata_contig12200.1681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2825bp|location=Sequence derived from alignment at H-elongata_contig12200:157..2981- (Himanthalia elongata Himel1 dioecious)
CCACTAAACCTTCACAGGATATTGACAGAAATCACGATGGACGCAAACAA GGTGAGCACGAAGGTTTGGGAATTCAGAGAGTTCCTCCCGTCTATCTGAT TTAAAACAGCTTGATGCTGTAAGGTGCTTAGCATTGGGTTAGGCGCCGTT CCCTTGAATTTGACTGTGGAATTTTGCCGCACTCCCTGTTACCACTCATT TCCCGCCGCATCACGGCGATGTTACCAACGTCCTTGCTCTGACAGGTGCC GCCTGCTTGAATGCCCGACATGGAACCAGTGTAGTTTAATAAATATTGTA TGCCAAGTTGAAATCTGGGGCTTAACGTTGTGGTGTGTAACATGCAAAGT AATGAGCCAGCTGGTGAGCAGAACACCACCCAACAGACTCGAAGGAGCCT CAAAACATTTGCGCCGCATTTTGGTCTTCTCCGTGACTTGCGTCAGAACA CCAGTAGCGTAATCACCACACCCTCTTCGTCAGGACTCGCTTTTACTCAG CAGTTCTTAGCACGGCACTATTCATGCGATCTCTATTTTAGAATCTGAAC TCATTGAAACCCTCCGAATATCTAGACCTTATTTTCGCAACAGGTTCGGT GAAATAATTTCCCTTCTCATAATACCCTTGCGAGTACAGTCAGTACGTCT GTGTAGTTATAAAGAGCTTACTTATAGTATGTTGTTATTACAATTCAAGA GTCGGAATCGGGGCGAATTGGAATCGCTTGCAGCGCGCCAAAGGGGATGA TTTTCGAATGCAAATACAGTACTGTCAATAGGTTATTTTATCCGGCATCT ATTAATATGATTTATCTATATTCCATGCCCACAACAGGCAGCAGCTAAGA ACTTGAAGAAATTGTTAAAAAAGAAGGCGAAAGCTGCTAGCGCTGAGGCC TCCGCTGGCAGACTCCGAACTCCCTCTATGGATCTTGCCGATGTCACCAA TGGGCGGGTGCGCACTAGCTCCATGAATTCAGACGAGGGTATTGACGGTG ACACCGCAAAAGGCGCTATCTCCCCCGGAAGGAAGAGCAAGAAGAAACGC GAGGCCGGAGAGGAGAAATATCCCACTCCGAAAAAGACAAAAAAGTCGAA GAAAACCGAAAAGGTTGACGATGACGTCGATCCGGCTGATGTCGTGCCTG CCCCCGCGCCCGCCAAGGCCGTGGGACTGACGCCGGAAGAGTTCTGTTCT TCTCACAAGATTATGATCAAGTCGGACAACGATAACTTCGCGGTGCCGCC GCCGATGGTCACCTTCGACGCCACTCCGTTCGGCGGCCCCATTCGCCAGG CGCTGAAGGCGGCCGGATACCCCGGGCCCACGCCCACCCAGGCTCAGTCC TGGCCCATCGCTATCAGCGGTAGAGACATCATATCCGTGGCGAGAACTGG ATCGGGTAAGACGCTGGGTTTTCTGCTTCCGGCGTTCCACGCCATAATGA ACCGTCCCGGTGGGATGAGGGTTTCTCGTGGGGCAGGTCCCTTCGTGTTG GTCCTAGCACCAACTCGGGAGCTGGCCTGTCAGATCAACGAGGAAGCCAC CAAGTTCGGCCGGGGTTCTGGCATCCGCAGCACGACTGTCTACGGTAAGC ATTCACTGTATTCAACCTTGTAATTTTCATTTCTAGCTCTTTGTAAGCAG GGAGTAGGGTCAACAACCTCAAACTTGGAAACGTTTGTCACAACTCATGT GCTTAACGCAGAATGCCCGTACTCCAGGTTCTTATCTTATTTTTCTCCAG TGTAGTTTAGGGATAAAATAAAGACTTTGTACACGACTCACTTTCGCCGT GCTCCCCTTCTATCCTCTCCAGGTGGTGCCCCGAAGTACCCGCAGATCAA GGCCATCGAGAGCGGGGTGCAGGTGGTCATTGCCACGCCCGGGCGCTTGA ACGATATAATCCAGATGGGCAAGATCAGCCTTTCGAACGTCATGACGCTC GCCCTCGACGAGGCCGATCGTATGCTCGACATGGGCTTTGAGCCACAGAT TCGTACCATCATCGAGGCGATCCCCCCGAAGCGTCAGACACTGTTCTTCA CGGCAACTTGGCCCAAAGAGGTGCAGCGCCTCGCGCGCGACTTCGTACGC GATCCCGTGCACATCACGGTGGGGGACGCCGGCAAGCTGAACGCGAACAA GAGCATCAAGCAAAACATATGCGTCATCGACGAGAGGGACAAGTCGGACA AGTTGTGGGAACTCCTCACGGAGCTGCACGGAAGTCCCCCCAAGTCGGAC CACTTCAAGACAGTGAGTAATGATCCCTGATCTATATCTATATATTCTTT CTTTTAGTAAGTTCGCACCTCTCTTAGGCAAGAGGCAAGAAGGTGTGCTC ATCTGATCTCGAGTCGCGCACAAGTAGCCACTGCTATGCACGGCACAATA CATGACCTCAGGTGGAGAGCAACGGTGCCGCTTTACCTATGGAAATATAC TTTCTGATATTTCCTCTTGAGTTTCTTGTTCGTGATTTGTTAAAGGCGTA CTTGGTACTAAACTTTTTTGTGTCCGGTAACAGGGGATATTGGACGAGGT GTTCAACGGTAAGGCGGCGGGAATTATTATCTTGCGAGCTTTTACGCCAA GCTCATGAGGATTGAATCGTTAGAGTCAAGGGATAAGCCGTACTTGAAGA TCGGTTTCCTTTCCTTCCCCCCCCCCCCTTCCTCTCCTTCCTTCAGATAA TATTTTCGTCGAAGAAGCGGAATTGTGACAAGCTTGCGCAGGGAGCATGG GACCGCGGCTTCGCGGTTGACTCTTTGCATGGTGATCGCGAGCAGTGGGA AAGGACCCAGGTCAGCTTTGTCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig12200:157..2981-

>mRNA_H-elongata_contig12200.1681.1 ID=mRNA_H-elongata_contig12200.1681.1|Name=mRNA_H-elongata_contig12200.1681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2754bp|location=Sequence derived from alignment at H-elongata_contig12200:157..2981- (Himanthalia elongata Himel1 dioecious)
CCACTAAACCTTCACAGGATATTGACAGAAATCACGATGGACGCAAACAA
GCCACTAAACCTTCACAGGATATTGACAGAAATCACGATGGACGCAAACA
AGGCAGCAGCTAAGAACTTGAAGAAATTGTTAAAAAAGAAGGCGAAAGCT
GCTAGCGCTGAGGCCTCCGCTGGCAGACTCCGAACTCCCTCTATGGATCT
TGCCGATGTCACCAATGGGCGGGTGCGCACTAGCTCCATGAATTCAGACG
AGGGTATTGACGGTGACACCGCAAAAGGCGCTATCTCCCCCGGAAGGAAG
AGCAAGAAGAAACGCGAGGCCGGAGAGGAGAAATATCCCACTCCGAAAAA
GACAAAAAAGTCGAAGAAAACCGAAAAGGTTGACGATGACGTCGATCCGG
CTGATGTCGTGCCTGCCCCCGCGCCCGCCAAGGCCGTGGGACTGACGCCG
GAAGAGTTCTGTTCTTCTCACAAGATTATGATCAAGTCGGACAACGATAA
CTTCGCGGTGCCGCCGCCGATGGTCACCTTCGACGCCACTCCGTTCGGCG
GCCCCATTCGCCAGGCGCTGAAGGCGGCCGGATACCCCGGGCCCACGCCC
ACCCAGGCTCAGTCCTGGCCCATCGCTATCAGCGGTAGAGACATCATATC
CGTGGCGAGAACTGGATCGGGTAAGACGCTGGGTTTTCTGCTTCCGGCGT
TCCACGCCATAATGAACCGTCCCGGTGGGATGAGGGTTTCTCGTGGGGCA
GGTCCCTTCGTGTTGGTCCTAGCACCAACTCGGGAGCTGGCCTGTCAGAT
CAACGAGGAAGCCACCAAGTTCGGCCGGGGTTCTGGCATCCGCAGCACGA
CTGTCTACGGCAGCAGCTAAGAACTTGAAGAAATTGTTAAAAAAGAAGGC
GAAAGCTGCTAGCGCTGAGGCCTCCGCTGGCAGACTCCGAACTCCCTCTA
TGGATCTTGCCGATGTCACCAATGGGCGGGTGCGCACTAGCTCCATGAAT
TCAGACGAGGGTATTGACGGTGACACCGCAAAAGGCGCTATCTCCCCCGG
AAGGAAGAGCAAGAAGAAACGCGAGGCCGGAGAGGAGAAATATCCCACTC
CGAAAAAGACAAAAAAGTCGAAGAAAACCGAAAAGGTTGACGATGACGTC
GATCCGGCTGATGTCGTGCCTGCCCCCGCGCCCGCCAAGGCCGTGGGACT
GACGCCGGAAGAGTTCTGTTCTTCTCACAAGATTATGATCAAGTCGGACA
ACGATAACTTCGCGGTGCCGCCGCCGATGGTCACCTTCGACGCCACTCCG
TTCGGCGGCCCCATTCGCCAGGCGCTGAAGGCGGCCGGATACCCCGGGCC
CACGCCCACCCAGGCTCAGTCCTGGCCCATCGCTATCAGCGGTAGAGACA
TCATATCCGTGGCGAGAACTGGATCGGGTAAGACGCTGGGTTTTCTGCTT
CCGGCGTTCCACGCCATAATGAACCGTCCCGGTGGGATGAGGGTTTCTCG
TGGGGCAGGTCCCTTCGTGTTGGTCCTAGCACCAACTCGGGAGCTGGCCT
GTCAGATCAACGAGGAAGCCACCAAGTTCGGCCGGGGTTCTGGCATCCGC
AGCACGACTGTCTACGGTGGTGCCCCGAAGTACCCGCAGATCAAGGCCAT
CGAGAGCGGGGTGCAGGTGGTCATTGCCACGCCCGGGCGCTTGAACGATA
TAATCCAGATGGGCAAGATCAGCCTTTCGAACGTCATGACGCTCGCCCTC
GACGAGGCCGATCGTATGCTCGACATGGGCTTTGAGCCACAGATTCGTAC
CATCATCGAGGCGATCCCCCCGAAGCGTCAGACACTGTTCTTCACGGCAA
CTTGGCCCAAAGAGGTGCAGCGCCTCGCGCGCGACTTCGTACGCGATCCC
GTGCACATCACGGTGGGGGACGCCGGCAAGCTGAACGCGAACAAGAGCAT
CAAGCAAAACATATGCGTCATCGACGAGAGGGACAAGTCGGACAAGTTGT
GGGAACTCCTCACGGAGCTGCACGGAAGTCCCCCCAAGTCGGACCACTTC
AAGACAGTGGTGCCCCGAAGTACCCGCAGATCAAGGCCATCGAGAGCGGG
GTGCAGGTGGTCATTGCCACGCCCGGGCGCTTGAACGATATAATCCAGAT
GGGCAAGATCAGCCTTTCGAACGTCATGACGCTCGCCCTCGACGAGGCCG
ATCGTATGCTCGACATGGGCTTTGAGCCACAGATTCGTACCATCATCGAG
GCGATCCCCCCGAAGCGTCAGACACTGTTCTTCACGGCAACTTGGCCCAA
AGAGGTGCAGCGCCTCGCGCGCGACTTCGTACGCGATCCCGTGCACATCA
CGGTGGGGGACGCCGGCAAGCTGAACGCGAACAAGAGCATCAAGCAAAAC
ATATGCGTCATCGACGAGAGGGACAAGTCGGACAAGTTGTGGGAACTCCT
CACGGAGCTGCACGGAAGTCCCCCCAAGTCGGACCACTTCAAGACAATAA
TATTTTCGTCGAAGAAGCGGAATTGTGACAAGCTTGCGCAGGGAGCATGG
GACCGCGGCTTCGCGGTTGACTCTTTGCATGGTGATCGCGAGCAGTGGGA
AAGGACCCAGGTCAGCTTTGTCTACATAATATTTTCGTCGAAGAAGCGGA
ATTGTGACAAGCTTGCGCAGGGAGCATGGGACCGCGGCTTCGCGGTTGAC
TCTTTGCATGGTGATCGCGAGCAGTGGGAAAGGACCCAGGTCAGCTTTGT
CTAC
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