mRNA_H-elongata_contig121875.1674.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig121875.1674.1
Unique NamemRNA_H-elongata_contig121875.1674.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A6H5L844_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L844_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.080e-47
Identity = 143/397 (36.02%), Postives = 184/397 (46.35%), Query Frame = 1
Query:    1 QANLSLGLRFGHASEVGSRRYMEDRTTAIGDIFQP--------RAPRYIGNRRIEVGASDSPCSL---------LVSDGTGDASTPSPTLYPSV--PPSPSGVGDRGVEDVG-GGEASHS------------------------TPVLKTP--AAFFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRRLR----------------------------------------------------AADFSDDDDNDT---GAVAPVSGRRETE-----GATPVLARGKA--VSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGG 867
            QANL++G+R+GH++E+GSRR MEDRT A+ DIF+         R+  +  +  I   ++ SP S              G    +TP      +V  P + +G G    ED G GG A+ +                        +P L TP  AAFF VYDGHDGD VAEAL +  H+++AKQ+CF DS+  A+E  CYEMD ACL  Q + L + R                                                       +A  S          G++    G  E E     G  P+ +R +    SS  D RSR   A P  TGG+TA VAV T++G+   IY  NVGDCRAVL R GVAIDLTSDHR SR DER R+KEAGG
Sbjct:  699 QANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKADATPSFRSRSEGFFPSSIILSRSNSSPRSSGKDEAARRRFFPPGAVAQATPCAVATVAVGDPAATAGTGAMAPEDTGMGGLAATNEEKETTAEKGGASGREEKQRSPPMSPSLSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQKCFTDSISAAIERGCYEMDIACLEAQFRMLGRDRXXXXXXXXXXXXXXXXXXXGETLSAGXXXXXXXXXXXXDAXXXXXXXXXXXXXXXSAAVSSPRGGGCDACGSILENPGGGEVEDYGSGGGKPLASRRRPREASSSSDVRSRPSGASPGMTGGATAVVAVATKVGKQTVIYAGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 1095          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.110e-45
Identity = 143/416 (34.38%), Postives = 180/416 (43.27%), Query Frame = 1
Query:    1 QANLSLGLRFGHASEVGSRRYMEDRTTAIGDIFQP--------RAPRYIGNRRIEVGASDSPCSLLVSDGTGDASTPSPTLYPSVPPSPS--GVGDRGVEDVG---------GGEAS---------------------HSTPVLKTP-----AAFFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDT---------------------------------------------------------------------GAVAPVSGRRETEGATPV----------LA---RGKAVSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGG 867
            QANL++G+R+GH++E+GSRR MEDRT A+ DIF+         R+  Y  +  I    S SP S    D       P+  +  + P + +   VGD      G         GG A+                      S P+  +P     AAFF VYDGHDGD VAEAL +  H+++AKQ+CF DS+  A+EH CYEMD ACL+ Q + L + R                                                                                    GA   +S  +  EG   V          LA   R +  SS  D RSRL    P  TGG+TA VAV T++G+   IYV NVGDCRAVL R GVAIDLTSDHR SR DER R+KEAGG
Sbjct: 1736 QANLTVGVRYGHSAEIGSRRVMEDRTVAVADIFKADATPSFRSRSEGYFPSSTILSRNSSSPGSGGQDDAARRRFFPAGAVAQATPGAVATVAVGDPAAASTGVVVPADTDTGGLAATKEEKETTEGRGGASGQEQKQRSPPMSPSPSTPLCAAFFGVYDGHDGDVVAEALQKGLHKLIAKQKCFTDSISAAIEHGCYEMDTACLDAQFRVLGRDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRGGGXXXCGACGSMSENQGGEGGDEVEDCGGGVGKPLAPRRRPREASSASDVRSRLSGTSPGMTGGATAVVAVATKVGKQTVIYVGNVGDCRAVLCRRGVAIDLTSDHRPSRDDERARVKEAGG 2151          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A7S0T394_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T394_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 2.150e-12
Identity = 66/197 (33.50%), Postives = 98/197 (49.75%), Query Frame = 1
Query:  286 EASHSTPV-LKTPAAFFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDS-VPKALEHSCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVS-SDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGG 867
            E +H+T + L    AFF VYDGH G EVA  + R  HEV    + +    +P+AL  S   MDA  ++     +  R  L+        + + G V  +S +        +LAR +A   +D +   R    P     G T  VAV+      +T+ V+N GD RAVL R G A++++ DH+ +  DER RI++AGG
Sbjct:   37 EDAHATVLGLDEDTAFFGVYDGHGGKEVAIYVSRHLHEVFKSNDAYKKGDIPQALIDSFLAMDANMIH-----ISGRDELQEL-VGKGGEREGGGVNDLSSKMRQ----AILARARANGDADVEGDGRPWEGPQ---AGCTCVVAVV----RGSTLVVANAGDSRAVLCRRGTAVEMSRDHKPTDEDERARIQKAGG 216          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: C1EH95_MICCC (Protein-serine/threonine phosphatase n=3 Tax=Micromonas TaxID=38832 RepID=C1EH95_MICCC)

HSP 1 Score: 75.9 bits (185), Expect = 5.460e-12
Identity = 69/198 (34.85%), Postives = 92/198 (46.46%), Query Frame = 1
Query:  286 EASHSTPV-LKTPAAFFAVYDGHDGDEVAEALHRKFHEVLAKQECFW-DSVPKALEHSCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVSSDRDARSRLERAPP--NRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGG 867
            E +HST + L    AFF VYDGH G EVA  + R  HEV  + E +    +P+ L  +   MD   L+     +  +  L   + +   D   G     S  R+      +LAR +A   D D    L+   P      GST  VAV+        + V+N GD RAVLSR G A+ L+ DH+    DER RI  AGG
Sbjct:   37 EDAHSTVLGLDEDTAFFGVYDGHGGKEVAVYISRHLHEVFKECESYKRGDIPQGLIDAFLAMDTNMLH-----VSGKDELN--ELAGKSDGGRGGADLSSKMRQA-----ILARARANGDDVDFEDDLDDEGPWEGPQAGSTCVVAVV----RGDKLVVANAGDSRAVLSRRGEALALSRDHKPMDDDERARIVNAGG 218          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A1Z5R3V2_SORBI (Protein-serine/threonine phosphatase n=3 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1Z5R3V2_SORBI)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-11
Identity = 63/182 (34.62%), Postives = 81/182 (44.51%), Query Frame = 1
Query:  328 FFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGGEL 873
            FFAVYDGH G  VAEA   + H VLA++          L       D                  AA F+  D   TG  +P           P        ++D    +      P RT GSTA VAV+ +      I V+N GD RAVLSRGGVA+ L++DH+  R DE  R++ AGG +
Sbjct:  125 FFAVYDGHGGARVAEACRERMHVVLAEE--------LGLRRGVGSDDLRW-----------EEAMAASFARVDGEVTGGFSP-----------PXXXXXXQTAADAADTNAGAGNLPYRTVGSTAVVAVVGQ----RRIVVANCGDSRAVLSRGGVAVPLSTDHKPDRPDEMQRVEAAGGRV 272          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A811RSM4_9POAL (Protein-serine/threonine phosphatase n=3 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RSM4_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 2.330e-11
Identity = 63/182 (34.62%), Postives = 78/182 (42.86%), Query Frame = 1
Query:  328 FFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGGEL 873
            FFAVYDGH G  VAEA   + H VLA++      V   L                          AA F+  D   TG  AP              A    +              P RT GSTA VAV+ +      I V+N GD RAVLSRGGVA+ L++DH+  R DE  R++ AGG +
Sbjct:  133 FFAVYDGHGGARVAEACRERMHVVLAEEVGLRRGVGSDLPWE--------------------EAMAASFARVDGEVTGGFAPXXXXXXXXXXXXXXAGAGNL--------------PYRTVGSTAVVAVVGQ----RRIVVANCGDSRAVLSRGGVAVPLSTDHKPDRPDEMQRVEAAGGRV 276          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A812NQS4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NQS4_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 1.030e-10
Identity = 66/216 (30.56%), Postives = 92/216 (42.59%), Query Frame = 1
Query:  325 AFFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDS--VPKALEHSCYEMDA-----------------------ACL----------NGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGG 867
            A+F ++DGH+GD VAEAL  + H VLA Q  F D   +  ALE +  E+DA                       AC+           G L       R+ A++        T   + V G   T+ A     R + +S    +      A   R   S A   V    G    +Y++N GDCRAVLS  G+A++LT DH+     E+ RI+ AGG
Sbjct:  836 AYFGIFDGHNGDAVAEALAARLHLVLAAQGEFEDEGDMSTALEGAFAELDAEICEQQARASLQGTASAACAGATACVAVLRWQAVGAGGDLPAAPPTPRMAASEAC------TPPASAVGGFSFTDCAAGTGVRARGMSMGTASPXXXXXAAALRRSQSAATSPVFGHCGRELVLYMANAGDCRAVLSHEGLAVNLTQDHKPKVQAEKARIEAAGG 1045          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A8K1CBS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBS9_PYTOL)

HSP 1 Score: 72.8 bits (177), Expect = 1.390e-10
Identity = 62/202 (30.69%), Postives = 93/202 (46.04%), Query Frame = 1
Query:  328 FFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRRLRAAD---------------FSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEA------ATIYVSNVGDCRAVLSRG-GVAIDLTSDHRFSRIDERTRIKEAGG 867
            FFAVYDGH+GD+ A  L ++ H    +   F       +   C  +D   L  Q + + +R+R    +               F +D+D++       + R  T     + + G +V+ +   RS L    P    GS A  AV+ +  E        T+YV+N GDCRAVL    G+A+DLT DH+ S   ER RI+ +GG
Sbjct: 1439 FFAVYDGHNGDDTARFLQKELHHRFLRHSDFPRDPLTTIRDVCELVDEEILEKQNRSVPKRKRTEMEEEIHSINDDDFGEFDGFVEDEDDECHPRGTKAAR--TPSVDSIGSMGSSVAPE--PRSALM---PISFSGSAAVFAVVAKRHEEPDKPAPTTLYVANSGDCRAVLCTSHGLAVDLTKDHKASLDSERERIEASGG 1633          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A0Q3QTE4_BRADI (Protein-serine/threonine phosphatase n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3QTE4_BRADI)

HSP 1 Score: 71.6 bits (174), Expect = 1.880e-10
Identity = 65/189 (34.39%), Postives = 84/189 (44.44%), Query Frame = 1
Query:  328 FFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRR------ETEGATPVLARGKAVSSDRDARSRLE-RAPPNRTGGSTAAVAVITRIGEAATIYVSNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGGEL 873
            FFAVYDGH G  VAEA   + H VLA++                                RRRLRA         D GA+      R      E   A+     G+ V +    R   +     +RT GSTA VAV+     +  I V+N GD RAVLSR GVA+ L++DH+  R DE  R++ AGG +
Sbjct:  116 FFAVYDGHGGARVAEACRERMHVVLAEELA------------------------------RRRLRA---------DAGAIGDEEDVRVRCCWKEAMAASFARVDGEVVEAAAAGRDDADVDESGSRTVGSTAVVAVVG----SRRIVVANCGDSRAVLSRAGVAVPLSTDHKPDRPDELQRVEAAGGRV 261          
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Match: A0A5D6YEV9_9STRA (cGMP-dependent protein kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEV9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.090e-9
Identity = 64/225 (28.44%), Postives = 99/225 (44.00%), Query Frame = 1
Query:  325 AFFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEHSCYEMDAACLNGQLQRLQQRRR---------------------LRAADFSDDDDNDTGAVAPVSGRRETEGATPVLARGKAVSSDRDARSRLER-APPNRTGGSTAAVA---------------------VITRIGEAATIYVSNVGDCRAVL-SRGGVAIDLTSDHRFSRIDERTRIKEAGG 867
            AFF VYDGH+G++ A  L ++ H  +     F D    A+  +C  +D   L+ Q + +  +R+                         +  DDDD     + P+S      GA  V A    V + R+ R + ER A     G + AAVA                           +A  ++V+NVGDCRAVL +  G+A++LT DH+ +  +E+ RI+E+GG
Sbjct: 1397 AFFGVYDGHNGEDTAVWLQKELHHRVLSHPQFTDEPKSAIFEACDTLDHEILDAQNRSMLPKRKRTMVNGDLXXXXXXXXXXXXXXEVQEICDDDDM-ACHLQPIS----FSGAVSVFA----VLAKRNKRQKTERDAAGGEPGATPAAVADAKSEREASXXXXXXXXXXXXXXXXXXDATMLFVTNVGDCRAVLCTADGLAVELTKDHKAALPEEKARIEESGG 1612          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig121875.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L844_9PHAE2.080e-4736.02PPM-type phosphatase domain-containing protein n=1... [more]
D8LIK7_ECTSI3.110e-4534.38cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A7S0T394_9CHLO2.150e-1233.50Protein-serine/threonine phosphatase n=1 Tax=Manto... [more]
C1EH95_MICCC5.460e-1234.85Protein-serine/threonine phosphatase n=3 Tax=Micro... [more]
A0A1Z5R3V2_SORBI1.660e-1134.62Protein-serine/threonine phosphatase n=3 Tax=Sorgh... [more]
A0A811RSM4_9POAL2.330e-1134.62Protein-serine/threonine phosphatase n=3 Tax=Misca... [more]
A0A812NQS4_9DINO1.030e-1030.56Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8K1CBS9_PYTOL1.390e-1030.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0Q3QTE4_BRADI1.880e-1034.39Protein-serine/threonine phosphatase n=2 Tax=Brach... [more]
A0A5D6YEV9_9STRA1.090e-928.44cGMP-dependent protein kinase n=1 Tax=Pythium bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig121875contigH-elongata_contig121875:98..1970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue4.3e-41
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size879
Cds size879
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig121875.1674.1prot_H-elongata_contig121875.1674.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig121875 98..1970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929717.6162424-CDS-H-elongata_contig121875:97..5081622929717.6162424-CDS-H-elongata_contig121875:97..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121875 98..508 +
1691679130.616699-CDS-H-elongata_contig121875:97..5081691679130.616699-CDS-H-elongata_contig121875:97..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121875 98..508 +
1622929717.628736-CDS-H-elongata_contig121875:1242..15631622929717.628736-CDS-H-elongata_contig121875:1242..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121875 1243..1563 +
1691679130.6290762-CDS-H-elongata_contig121875:1242..15631691679130.6290762-CDS-H-elongata_contig121875:1242..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121875 1243..1563 +
1622929717.6409295-CDS-H-elongata_contig121875:1823..19701622929717.6409295-CDS-H-elongata_contig121875:1823..1970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121875 1824..1970 +
1691679130.6384034-CDS-H-elongata_contig121875:1823..19701691679130.6384034-CDS-H-elongata_contig121875:1823..1970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig121875 1824..1970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig121875.1674.1

>prot_H-elongata_contig121875.1674.1 ID=prot_H-elongata_contig121875.1674.1|Name=mRNA_H-elongata_contig121875.1674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
QANLSLGLRFGHASEVGSRRYMEDRTTAIGDIFQPRAPRYIGNRRIEVGA
SDSPCSLLVSDGTGDASTPSPTLYPSVPPSPSGVGDRGVEDVGGGEASHS
TPVLKTPAAFFAVYDGHDGDEVAEALHRKFHEVLAKQECFWDSVPKALEH
SCYEMDAACLNGQLQRLQQRRRLRAADFSDDDDNDTGAVAPVSGRRETEG
ATPVLARGKAVSSDRDARSRLERAPPNRTGGSTAAVAVITRIGEAATIYV
SNVGDCRAVLSRGGVAIDLTSDHRFSRIDERTRIKEAGGELRK
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mRNA from alignment at H-elongata_contig121875:98..1970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig121875.1674.1 ID=mRNA_H-elongata_contig121875.1674.1|Name=mRNA_H-elongata_contig121875.1674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1873bp|location=Sequence derived from alignment at H-elongata_contig121875:98..1970+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAACCTGAGCCTAGGCTTGCGTTTTGGGCATGCTTCGGAGGTCGG AAGCCGCCGCTACATGGAGGACCGCACCACGGCGATCGGTGACATTTTCC AGCCGCGAGCGCCCCGCTACATCGGGAACAGAAGGATCGAGGTCGGTGCT TCCGACAGTCCCTGCTCCCTCCTTGTCTCAGACGGCACCGGGGACGCTTC AACTCCGTCCCCTACCCTATATCCCTCGGTGCCGCCTTCTCCGTCCGGCG TCGGCGATCGCGGCGTGGAGGATGTCGGCGGCGGGGAGGCGAGCCACTCG ACCCCGGTTTTGAAGACACCGGCGGCGTTTTTCGCGGTGTACGACGGGCA CGACGGCGATGAGGTGGCGGAGGCGTTGCATAGAAAATTTCATGAGGTAC TTGCTAAGCAGGTAAGAAAAAAGGGTAATAATGGGGGGGGAGGGGGGGTG ATTATTATAGGGAATGATAAAAAATGAAATAAAATATGAGGTGGAGAGGG AACGGGGGAGAAAATAAAATAGCGAAACGGAGAGGGAAAAATATGCATTG TTTAAGAGAAGCTCGGAGGCGAGGGGAGTTCGGGGTAAAGAAGCCGACAA TTTTGTGAATCTATTTTTTAATATTATTTTTAAGTTGTAAAATGAATCCT TGGGCGGCCCCCCGAGAGTTGGGTTTTTGTATTATGTTCTGGACGTCAAT AGGGGGAGGGAAGGGATCTTGGCGTGTAATATCATAGTTGTTGTTATGTA GTAGTTGTAGTAGTTGTGGTTGTTGCAGTCCTCGAGACGAGAGCGTTTAC CATATTATACTAACTATAGTATACTCCGGAGTGGGTGGAGGGTGCTTCTC AAGGTATCAACATCTTTTAAATAAAAATAATTGGTCTAGGCGTTTGTTCT CCACGGTCCTACATGGTCCTACGTGCTGGTTCTGCCGCTGTTGCTGTTGC TGTTGTAAGAAGTGTATCGGGTGATTCGGGTGATGTAGCTCTTGAGCCTG AATGGTTCATATACCGGGAATTGTCCTATATATCAATAAAAATGTAAAGC CTAAATATATGTGTATATATAACGTGATCGATCCCGATTTTATATTAATA ATGATAATAATAATAATAATAATGCACCTGGTATGTTTTATAAAGGAATG CTTCTGGGACAGCGTACCCAAGGCCTTAGAGCACTCCTGCTACGAGATGG ACGCGGCCTGCCTAAACGGTCAGCTCCAGCGACTCCAGCAGCGGCGGCGG CTGCGAGCGGCGGATTTCTCTGACGACGACGATAACGACACAGGCGCCGT CGCTCCTGTATCCGGCCGAAGAGAAACCGAGGGAGCCACTCCGGTGCTTG CACGGGGGAAAGCAGTCTCCAGCGATCGAGATGCGAGGAGCAGACTGGAA AGGGCGCCTCCGAACCGCACGGGAGGCTCCACGGCAGCGGTGGCAGTTAT TACCAGAATTGGCGAGGTGGGTAAATGAAGGATAGGATTGATAGGATTCA TGTCCGTGATTGATTTGAGGGCGGAGTCCCCCCCCCCGTCACCTAAAGAT ACAAATAATATCTCACTCCAAAGGAAGGAATTTTTACTTCAAAATAAAGC CACTGAGTTCCCCTGCGGTGCGATTCTAGGTTGTAACATACCCCCTTTGA TTTCAAGTGAAATATTTACGGTGTCACCCGGTACACCCATTTTGTTTTGT TGTGTCACGGGTAACGGAAGGCGAAGGCGGCGACGATCTACGTCAGCAAT GTGGGTGATTGCAGGGCGGTGCTGTCTCGCGGAGGGGTGGCGATCGACCT CACGTCCGACCACCGCTTCTCACGAATCGACGAGCGGACGAGGATCAAGG AGGCTGGGGGTGAATTGAGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig121875:98..1970+

>mRNA_H-elongata_contig121875.1674.1 ID=mRNA_H-elongata_contig121875.1674.1|Name=mRNA_H-elongata_contig121875.1674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig121875:98..1970+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAACCTGAGCCTAGGCTTGCGTTTTGGGCATGCTTCGGAGGTCGG
AAGCCGCCGCTACATGGAGGACCGCACCACGGCGATCGGTGACATTTTCC
AGCCGCGAGCGCCCCGCTACATCGGGAACAGAAGGATCGAGGTCGGTGCT
TCCGACAGTCCCTGCTCCCTCCTTGTCTCAGACGGCACCGGGGACGCTTC
AACTCCGTCCCCTACCCTATATCCCTCGGTGCCGCCTTCTCCGTCCGGCG
TCGGCGATCGCGGCGTGGAGGATGTCGGCGGCGGGGAGGCGAGCCACTCG
ACCCCGGTTTTGAAGACACCGGCGGCGTTTTTCGCGGTGTACGACGGGCA
CGACGGCGATGAGGTGGCGGAGGCGTTGCATAGAAAATTTCATGAGGTAC
TTGCTAAGCAGCAGGCGAACCTGAGCCTAGGCTTGCGTTTTGGGCATGCT
TCGGAGGTCGGAAGCCGCCGCTACATGGAGGACCGCACCACGGCGATCGG
TGACATTTTCCAGCCGCGAGCGCCCCGCTACATCGGGAACAGAAGGATCG
AGGTCGGTGCTTCCGACAGTCCCTGCTCCCTCCTTGTCTCAGACGGCACC
GGGGACGCTTCAACTCCGTCCCCTACCCTATATCCCTCGGTGCCGCCTTC
TCCGTCCGGCGTCGGCGATCGCGGCGTGGAGGATGTCGGCGGCGGGGAGG
CGAGCCACTCGACCCCGGTTTTGAAGACACCGGCGGCGTTTTTCGCGGTG
TACGACGGGCACGACGGCGATGAGGTGGCGGAGGCGTTGCATAGAAAATT
TCATGAGGTACTTGCTAAGCAGGAATGCTTCTGGGACAGCGTACCCAAGG
CCTTAGAGCACTCCTGCTACGAGATGGACGCGGCCTGCCTAAACGGTCAG
CTCCAGCGACTCCAGCAGCGGCGGCGGCTGCGAGCGGCGGATTTCTCTGA
CGACGACGATAACGACACAGGCGCCGTCGCTCCTGTATCCGGCCGAAGAG
AAACCGAGGGAGCCACTCCGGTGCTTGCACGGGGGAAAGCAGTCTCCAGC
GATCGAGATGCGAGGAGCAGACTGGAAAGGGCGCCTCCGAACCGCACGGG
AGGCTCCACGGCAGCGGTGGCAGTTATTACCAGAATTGGCGAGGAATGCT
TCTGGGACAGCGTACCCAAGGCCTTAGAGCACTCCTGCTACGAGATGGAC
GCGGCCTGCCTAAACGGTCAGCTCCAGCGACTCCAGCAGCGGCGGCGGCT
GCGAGCGGCGGATTTCTCTGACGACGACGATAACGACACAGGCGCCGTCG
CTCCTGTATCCGGCCGAAGAGAAACCGAGGGAGCCACTCCGGTGCTTGCA
CGGGGGAAAGCAGTCTCCAGCGATCGAGATGCGAGGAGCAGACTGGAAAG
GGCGCCTCCGAACCGCACGGGAGGCTCCACGGCAGCGGTGGCAGTTATTA
CCAGAATTGGCGAGGCGGCGACGATCTACGTCAGCAATGTGGGTGATTGC
AGGGCGGTGCTGTCTCGCGGAGGGGTGGCGATCGACCTCACGTCCGACCA
CCGCTTCTCACGAATCGACGAGCGGACGAGGATCAAGGAGGCTGGGGGTG
AATTGAGAAAAGCGGCGACGATCTACGTCAGCAATGTGGGTGATTGCAGG
GCGGTGCTGTCTCGCGGAGGGGTGGCGATCGACCTCACGTCCGACCACCG
CTTCTCACGAATCGACGAGCGGACGAGGATCAAGGAGGCTGGGGGTGAAT
TGAGAAAA
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