mRNA_H-elongata_contig91872.16642.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91872.16642.1
Unique NamemRNA_H-elongata_contig91872.16642.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 85.1 bits (209), Expect = 3.520e-18
Identity = 51/123 (41.46%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 ISYLDALMKTGSESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGC-VGGQGKEWMGCLLENLK--------------VFGINVDQWTIAAQDEGEWRKTAEQGAEHFMKKWVAAE 324
            +SY  AL  T  ESIET +R+RR+ FAG VAR    RLP  VMFG I  G     GGQ K W  C++E+L+              VFG+    W  AA+  G+W +   + AE FM +W  AE
Sbjct:   14 LSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAE 136          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.930e-17
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINV----DQWTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY  AL++ G  E+IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQ  +W+  L E+L  F +      D+W  +A+D   W    E+GA  FM+KW
Sbjct:  289 LSYAHALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKDPEVWYNKVEKGAAWFMRKW 397          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.120e-16
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    7 YLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            Y  AL+K G  E+IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQ  +W+  L E+L  F +  ++    W  +A++   W    E GA  FM+KW
Sbjct:   51 YAQALIKAGCEETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKW 157          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-16
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY  AL++ G  E+IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQ  +W+  L E+L  F ++ ++    W  +A+D   W    E GA  FM+KW
Sbjct:  683 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKW 791          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.620e-16
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 ISYLDALMKTGSESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQG---KEWMGCLLENLK--------------VFGINVDQWTIAAQDEG--EWRKTAEQGAEHFMKKW 312
            +SY  AL + G +S+E  +R+RR+LFAG VAR  D RLPK +MFGE++ G G   GQG   + W+ CL +++K              VFG+    W+ AA+ EG   W     QGAE FM  W
Sbjct:  626 LSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGP--GQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASW 746          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JTX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.950e-16
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 ISYLDALMKTGSE-SIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY +AL++ G E +IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQ  +W+  L E+L  F +  ++    W  +A++   W    E GA  FM+KW
Sbjct:  301 LSYAEALIQAGCEQTIEATVRKRRLCFAGFVMRMEDSRLPKRILIGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKW 409          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.010e-16
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY  AL++ G  E+IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQG +W+  L E L  F +  ++    W  +A+D   W    E  A  FM+KW
Sbjct:  169 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDVAAWFMRKW 277          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5KN74_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN74_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.560e-16
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY  AL++ G  E+IE  +R+RR+ FAGFV RT+D+RLPK ++   +  G G  GGQ  +W+  L E+L  F +  ++    W  +A++   W    E GA  FM+KW
Sbjct:  118 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRTEDSRLPKRMLLRAMTGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKW 226          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.080e-16
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY  AL++ G  E+IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQ  +W+  L E+L  F +  ++    W  +A+D   W    E  A  FM+KW
Sbjct:   65 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKW 173          
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.150e-16
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
            +SY  AL++ G  E+IE  +R+RR+ FAGFV R +D+RLPK ++ G +  G G  GGQ  +W+  L E+L  F +  ++    W  +A+D   W    E GA  FM+KW
Sbjct:  588 LSYAQALIQAGCKETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVPRLGEDLVAFNMRDEKEGGKWKESAKDPEVWYDKVEDGAAWFMRKW 696          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1AADC3.520e-1841.46hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5LG55_9PHAE3.930e-1741.28Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNV8_9PHAE1.120e-1640.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.200e-1640.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX7_9PHAE1.620e-1641.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTX2_9PHAE1.950e-1639.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCS2_9PHAE2.010e-1640.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KN74_9PHAE2.560e-1639.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGF6_9PHAE4.080e-1639.45Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L618_9PHAE4.150e-1640.37MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91872contigH-elongata_contig91872:2003..2347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.6
Seed ortholog evalue2e-12
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.4404166-CDS-H-elongata_contig91872:2002..23261622931316.4404166-CDS-H-elongata_contig91872:2002..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91872 2003..2326 -
1691679786.721042-CDS-H-elongata_contig91872:2002..23261691679786.721042-CDS-H-elongata_contig91872:2002..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91872 2003..2326 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931316.4568596-UTR-H-elongata_contig91872:2326..23471622931316.4568596-UTR-H-elongata_contig91872:2326..2347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91872 2327..2347 -
1691679786.7350528-UTR-H-elongata_contig91872:2326..23471691679786.7350528-UTR-H-elongata_contig91872:2326..2347Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig91872 2327..2347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91872.16642.1prot_H-elongata_contig91872.16642.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91872 2003..2326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91872.16642.1

>prot_H-elongata_contig91872.16642.1 ID=prot_H-elongata_contig91872.16642.1|Name=mRNA_H-elongata_contig91872.16642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MKTGSESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQ
GKEWMGCLLENLKVFGINVDQWTIAAQDEGEWRKTAEQGAEHFMKKWVAA
EKVRAELR
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mRNA from alignment at H-elongata_contig91872:2003..2347-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91872.16642.1 ID=mRNA_H-elongata_contig91872.16642.1|Name=mRNA_H-elongata_contig91872.16642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig91872:2003..2347- (Himanthalia elongata Himel1 dioecious)
ATCTCCTATCTGGACGCCCTAATGAAGACGGGAAGCGAGAGCATCGAGAC GATCATGCGCAGGAGGCGGATCCTGTTTGCGGGATTTGTGGCGCGCACGG ACGACACGAGATTGCCGAAGTGCGTAATGTTCGGAGAAATTATGGAGGGC GCAGGCTGCGTGGGAGGGCAGGGAAAAGAGTGGATGGGGTGTCTTCTGGA AAACCTCAAAGTTTTCGGTATCAACGTCGACCAGTGGACGATTGCAGCCC AGGACGAGGGGGAATGGCGTAAGACGGCGGAACAAGGGGCGGAACATTTC ATGAAGAAATGGGTCGCTGCAGAGAAAGTCAGGGCTGAACTACGG
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Coding sequence (CDS) from alignment at H-elongata_contig91872:2003..2347-

>mRNA_H-elongata_contig91872.16642.1 ID=mRNA_H-elongata_contig91872.16642.1|Name=mRNA_H-elongata_contig91872.16642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig91872:2003..2347- (Himanthalia elongata Himel1 dioecious)
ATGAAGACGGGAAGCGAGAGCATCGAGACGATCATGCGCAGGAGGCGGAT
CCTGTTTGCGGGATTTGTGGCGCGCACGGACGACACGAGATTGCCGAAGT
GCGTAATGTTCGGAGAAATTATGGAGGGCGCAGGCTGCGTGGGAGGGCAG
GGAAAAGAGTGGATGGGGTGTCTTCTGGAAAACCTCAAAGTTTTCGGTAT
CAACGTCGACCAGTGGACGATTGCAGCCCAGGACGAGGGGGAATGGCGTA
AGACGGCGGAACAAGGGGCGGAACATTTCATGAAGAAATGGGTCGCTGCA
GAGAAAGTCAGGGCTGAACTACGGATGAAGACGGGAAGCGAGAGCATCGA
GACGATCATGCGCAGGAGGCGGATCCTGTTTGCGGGATTTGTGGCGCGCA
CGGACGACACGAGATTGCCGAAGTGCGTAATGTTCGGAGAAATTATGGAG
GGCGCAGGCTGCGTGGGAGGGCAGGGAAAAGAGTGGATGGGGTGTCTTCT
GGAAAACCTCAAAGTTTTCGGTATCAACGTCGACCAGTGGACGATTGCAG
CCCAGGACGAGGGGGAATGGCGTAAGACGGCGGAACAAGGGGCGGAACAT
TTCATGAAGAAATGGGTCGCTGCAGAGAAAGTCAGGGCTGAACTACGG
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