mRNA_H-elongata_contig91872.16642.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC) HSP 1 Score: 85.1 bits (209), Expect = 3.520e-18 Identity = 51/123 (41.46%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 1 ISYLDALMKTGSESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGC-VGGQGKEWMGCLLENLK--------------VFGINVDQWTIAAQDEGEWRKTAEQGAEHFMKKWVAAE 324
+SY AL T ESIET +R+RR+ FAG VAR RLP VMFG I G GGQ K W C++E+L+ VFG+ W AA+ G+W + + AE FM +W AE
Sbjct: 14 LSYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAE 136
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.930e-17 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINV----DQWTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY AL++ G E+IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQ +W+ L E+L F + D+W +A+D W E+GA FM+KW
Sbjct: 289 LSYAHALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFSMGDEMEGDKWKESAKDPEVWYNKVEKGAAWFMRKW 397
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.120e-16 Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 7 YLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
Y AL+K G E+IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQ +W+ L E+L F + ++ W +A++ W E GA FM+KW
Sbjct: 51 YAQALIKAGCEETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKW 157
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.200e-16 Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY AL++ G E+IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQ +W+ L E+L F ++ ++ W +A+D W E GA FM+KW
Sbjct: 683 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKW 791
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.620e-16 Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 1 ISYLDALMKTGSESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQG---KEWMGCLLENLK--------------VFGINVDQWTIAAQDEG--EWRKTAEQGAEHFMKKW 312
+SY AL + G +S+E +R+RR+LFAG VAR D RLPK +MFGE++ G G GQG + W+ CL +++K VFG+ W+ AA+ EG W QGAE FM W
Sbjct: 626 LSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGP--GQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASW 746
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JTX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX2_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.950e-16 Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 1 ISYLDALMKTGSE-SIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY +AL++ G E +IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQ +W+ L E+L F + ++ W +A++ W E GA FM+KW
Sbjct: 301 LSYAEALIQAGCEQTIEATVRKRRLCFAGFVMRMEDSRLPKRILIGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKW 409
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 2.010e-16 Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY AL++ G E+IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQG +W+ L E L F + ++ W +A+D W E A FM+KW
Sbjct: 169 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDVAAWFMRKW 277
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5KN74_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN74_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.560e-16 Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY AL++ G E+IE +R+RR+ FAGFV RT+D+RLPK ++ + G G GGQ +W+ L E+L F + ++ W +A++ W E GA FM+KW
Sbjct: 118 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRTEDSRLPKRMLLRAMTGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKW 226
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 4.080e-16 Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY AL++ G E+IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQ +W+ L E+L F + ++ W +A+D W E A FM+KW
Sbjct: 65 LSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKW 173
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.150e-16 Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 1 ISYLDALMKTG-SESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQGKEWMGCLLENLKVFGINVDQ----WTIAAQDEGEWRKTAEQGAEHFMKKW 312
+SY AL++ G E+IE +R+RR+ FAGFV R +D+RLPK ++ G + G G GGQ +W+ L E+L F + ++ W +A+D W E GA FM+KW
Sbjct: 588 LSYAQALIQAGCKETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVPRLGEDLVAFNMRDEKEGGKWKESAKDPEVWYDKVEDGAAWFMRKW 696 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91872.16642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig91872.16642.1 >prot_H-elongata_contig91872.16642.1 ID=prot_H-elongata_contig91872.16642.1|Name=mRNA_H-elongata_contig91872.16642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp MKTGSESIETIMRRRRILFAGFVARTDDTRLPKCVMFGEIMEGAGCVGGQback to top mRNA from alignment at H-elongata_contig91872:2003..2347- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig91872.16642.1 ID=mRNA_H-elongata_contig91872.16642.1|Name=mRNA_H-elongata_contig91872.16642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig91872:2003..2347- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig91872:2003..2347- >mRNA_H-elongata_contig91872.16642.1 ID=mRNA_H-elongata_contig91872.16642.1|Name=mRNA_H-elongata_contig91872.16642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig91872:2003..2347- (Himanthalia elongata Himel1 dioecious)back to top |