mRNA_H-elongata_contig91710.16630.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig91710.16630.1
Unique NamemRNA_H-elongata_contig91710.16630.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: D7G461_ECTSI (JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G461_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.600e-77
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            RRY  CKLKCGEDDDGY+VKVK+KYFLRYM+HQ DDSPLY+FDSHFDDH+VAKGLLEDF VP YFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP
Sbjct:  121 RRYGDCKLKCGEDDDGYSVKVKLKYFLRYMDHQTDDSPLYIFDSHFDDHEVAKGLLEDFFVPHYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 240          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A0W8DCB3_PHYNI (Dynein light chain 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DCB3_PHYNI)

HSP 1 Score: 194 bits (492), Expect = 8.030e-62
Identity = 83/120 (69.17%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            + Y++ +LKCGEDD G ++++K KYF+ YM +Q DDSPLY+FDS FDDH   K LL+D++VP YFP+DLFSLVGE RRPPYRWFLVGPKRSGT++H+DPLGTSAWNT++ GRK WVLFPP
Sbjct:    6 KNYKRVQLKCGEDDYGKSIRMKFKYFVTYMNNQTDDSPLYIFDSTFDDHKDTKPLLDDYKVPKYFPEDLFSLVGEDRRPPYRWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPP 125          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A6V1R424_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R424_HETAK)

HSP 1 Score: 201 bits (510), Expect = 1.130e-60
Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            R+Y   K KCGEDDDGY+VKV++K+FL Y+E Q DDSPLYVFDS FDD      LL DF VPSYFP+DLF LVGER+RPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSG K WVLFPP
Sbjct:   11 RQYGDAKFKCGEDDDGYSVKVRMKHFLDYVERQADDSPLYVFDSGFDDKKETAPLLGDFAVPSYFPEDLFQLVGERKRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGIKRWVLFPP 130          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A4D9CR63_9STRA (JmjC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR63_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.110e-60
Identity = 88/120 (73.33%), Postives = 106/120 (88.33%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            RR R+   KCGEDDDG +V+V++K+F +Y+  QKDDSPLY+FDS +DD+  AK LL+D++VPSYFPDD FSLVGERRRPPYRWFLVGP+RSGTS+HIDPLGTSAWNTV++GRK WVLFPP
Sbjct:  106 RRIRKYTFKCGEDDDGRSVRVRLKHFFKYLAKQKDDSPLYIFDSTYDDNKEAKVLLDDYKVPSYFPDDFFSLVGERRRPPYRWFLVGPRRSGTSLHIDPLGTSAWNTVLTGRKRWVLFPP 225          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A3M6VB54_9STRA (JmjC domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB54_9STRA)

HSP 1 Score: 197 bits (501), Expect = 6.590e-59
Identity = 83/118 (70.34%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    7 YRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            Y+  +LKCGEDD G ++++K KYF+ Y+ HQ DDSPLY+FDS FDDH+  K LL+D++VP YFP+DLFSLVGE RRPPYRWFLVGPKRSGT++H+DPLGTSAWNT++ GRK WVLFPP
Sbjct:  189 YKNVELKCGEDDHGKSIRMKFKYFMTYLNHQTDDSPLYIFDSTFDDHEDTKPLLDDYKVPKYFPEDLFSLVGESRRPPYRWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPP 306          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A813B7I6_9DINO (Jmjd6 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B7I6_9DINO)

HSP 1 Score: 191 bits (486), Expect = 7.520e-59
Identity = 86/117 (73.50%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   10 RQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            R  K KCGEDDDGYAVK+K+KYFLRYMEHQ+DDSP+Y+FDS FD+   AK LL  + VP YF +DLF LVGE RRPPYRWFL+GPKRSGTS H DPL TSAWN +V GRK WVLFPP
Sbjct:   52 RHRKFKCGEDDDGYAVKMKLKYFLRYMEHQRDDSPMYIFDSTFDEDKRAKTLLSSYSVPEYFNEDLFRLVGESRRPPYRWFLIGPKRSGTSPHTDPLATSAWNALVVGRKRWVLFPP 168          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: G4ZR36_PHYSP (JmjC domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4ZR36_PHYSP)

HSP 1 Score: 195 bits (496), Expect = 1.720e-58
Identity = 83/120 (69.17%), Postives = 102/120 (85.00%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            + Y++  LKCGEDD+G  +++K KYF+ Y+ HQ DDSPLY+FDS FDDH   K LL+D++VP YFP+DLFSLVGE RRPPYRWFLVGPKRSGT++H+DPLGTSAWNT++ GRK WVLFPP
Sbjct:  154 KNYKRVMLKCGEDDNGKTIRMKFKYFMTYLNHQTDDSPLYIFDSTFDDHKDTKPLLDDYKVPKYFPEDLFSLVGEDRRPPYRWFLVGPKRSGTTLHLDPLGTSAWNTLLVGRKRWVLFPP 273          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A836CFU6_9STRA (JMJD6 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU6_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.330e-58
Identity = 89/141 (63.12%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQK---------------------DDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            R Y + ++KCGEDDDGY++KV++K+F+ Y+++Q+                     DDSPLY+FDSHFD+HDV K LL+++RVPSYFPDDLF LVGERRRPPYRWFLVGPKRSGT  HIDPLGTSAWNTV+ GRK WV+FPP
Sbjct:  210 RVYGEVRMKCGEDDDGYSIKVRLKHFVNYVKNQQALSINTKXXXXXXXXXXXXXXDDSPLYIFDSHFDEHDVGKALLQEYRVPSYFPDDLFELVGERRRPPYRWFLVGPKRSGTCCHIDPLGTSAWNTVLVGRKRWVIFPP 350          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: A0A484E8M1_BRELC (JmjC domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8M1_BRELC)

HSP 1 Score: 194 bits (494), Expect = 2.410e-58
Identity = 83/120 (69.17%), Postives = 104/120 (86.67%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            R+Y++ + KCGEDD G ++++K+KYFL Y+ +Q DDSPLY+FDS FDDH   K LLED++VP YFP+DLFSLVGE RRPPYRWFL+GPKRSGT++HIDPLGTSAWNT++ GRK W+LFPP
Sbjct:  141 RKYKRVEFKCGEDDYGKSIRMKLKYFLIYLTYQIDDSPLYIFDSSFDDHVDTKSLLEDYQVPKYFPEDLFSLVGEDRRPPYRWFLIGPKRSGTTLHIDPLGTSAWNTLIVGRKRWILFPP 260          
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Match: V9EZE5_PHYPR (JmjC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9EZE5_PHYPR)

HSP 1 Score: 194 bits (492), Expect = 5.520e-58
Identity = 83/120 (69.17%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    1 RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHDVAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPLGTSAWNTVVSGRKLWVLFPP 360
            + Y++ +LKCGEDD G ++++K KYF+ YM +Q DDSPLY+FDS FDDH   K LL+D++VP YFP+DLFSLVGE RRPPYRWFLVGPKRSGT++H+DPLGTSAWNT++ GRK WVLFPP
Sbjct:  150 KNYKRVQLKCGEDDYGKSIRMKFKYFVTYMNNQTDDSPLYIFDSTFDDHKDTKPLLDDYKVPKYFPEDLFSLVGEDRRPPYRWFLVGPKRSGTTLHLDPLGTSAWNTLIVGRKRWVLFPP 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig91710.16630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G461_ECTSI3.600e-7791.67JMJD6 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A0W8DCB3_PHYNI8.030e-6269.17Dynein light chain 1 n=1 Tax=Phytophthora nicotian... [more]
A0A6V1R424_HETAK1.130e-6077.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CR63_9STRA4.110e-6073.33JmjC domain-containing protein n=2 Tax=Monodopsida... [more]
A0A3M6VB54_9STRA6.590e-5970.34JmjC domain-containing protein n=2 Tax=Peronospora... [more]
A0A813B7I6_9DINO7.520e-5973.50Jmjd6 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
G4ZR36_PHYSP1.720e-5869.17JmjC domain-containing protein n=9 Tax=Phytophthor... [more]
A0A836CFU6_9STRA2.330e-5863.12JMJD6 protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A484E8M1_BRELC2.410e-5869.17JmjC domain-containing protein n=1 Tax=Bremia lact... [more]
V9EZE5_PHYPR5.520e-5869.17JmjC domain-containing protein n=8 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig91710contigH-elongata_contig91710:764..1752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D7G461
KEGG koko:K11323
EggNOG free text desc.peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
EggNOG OGsKOG2130@1,KOG2130@2759
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-02_001410.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig91710.16630.1prot_H-elongata_contig91710.16630.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig91710 764..1752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931315.2854636-CDS-H-elongata_contig91710:763..8231622931315.2854636-CDS-H-elongata_contig91710:763..823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91710 764..823 +
1691679786.0972347-CDS-H-elongata_contig91710:763..8231691679786.0972347-CDS-H-elongata_contig91710:763..823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91710 764..823 +
1622931315.3017545-CDS-H-elongata_contig91710:1222..14071622931315.3017545-CDS-H-elongata_contig91710:1222..1407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91710 1223..1407 +
1691679786.110497-CDS-H-elongata_contig91710:1222..14071691679786.110497-CDS-H-elongata_contig91710:1222..1407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91710 1223..1407 +
1622931315.3184044-CDS-H-elongata_contig91710:1637..17521622931315.3184044-CDS-H-elongata_contig91710:1637..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91710 1638..1752 +
1691679786.1258066-CDS-H-elongata_contig91710:1637..17521691679786.1258066-CDS-H-elongata_contig91710:1637..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig91710 1638..1752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig91710.16630.1

>prot_H-elongata_contig91710.16630.1 ID=prot_H-elongata_contig91710.16630.1|Name=mRNA_H-elongata_contig91710.16630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
RRYRQCKLKCGEDDDGYAVKVKVKYFLRYMEHQKDDSPLYVFDSHFDDHD
VAKGLLEDFRVPSYFPDDLFSLVGERRRPPYRWFLVGPKRSGTSVHIDPL
GTSAWNTVVSGRKLWVLFPP
back to top

mRNA from alignment at H-elongata_contig91710:764..1752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig91710.16630.1 ID=mRNA_H-elongata_contig91710.16630.1|Name=mRNA_H-elongata_contig91710.16630.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=989bp|location=Sequence derived from alignment at H-elongata_contig91710:764..1752+ (Himanthalia elongata Himel1 dioecious)
CGCAGATACCGCCAGTGCAAGCTAAAGTGCGGAGAGGATGACGACGGCTA CGCGGTTAAGGTGATGAGAGCAAGTGCTGCTGTTCGCTATTTAGAGCGGT GTTTGGACGAGGTTTAGATGTACTCTGTAATATATATATATTTATATGTT GATGGGATATTTTCGTCCCGTTCGTCAAACTCACTCAGACTGACGGTGCT TTTTTTAATTGTCGAGCCAATTGCGTGCTGCGATAAGACGGCAGAAAGAC AGAGATAACTCAGCTGAGTAGCTTTACCGCCACCCGAAGCTTACGGTGTA GGGAGGGTGAGATAGGAAATAATATATCAGATAGCAGTAGCGTGGGTATG TGCCCCCTGGGTGATTCGGCACGCCGGCGTGCTGTTGGCTTTAGCGTCAA AATGCCGTTGCCAAAAGAGGCGCTTTATCTGTTGTCTGCCCTGCCGTGTT GCTTGTTAGGTGAAGGTGAAATACTTTTTGCGGTACATGGAACACCAGAA AGATGACAGCCCGCTCTACGTCTTCGATAGCCACTTCGACGACCACGATG TTGCCAAGGGGCTGCTTGAGGACTTCCGCGTGCCCAGCTATTTCCCCGAC GATCTCTTTTCCTTGGTGGGGGAAAGGCGCCGCCCACCGTACAGGTAAGC CGTCCTGAACGGAGTCGTTCGGGGGAGTCACTCGGAGTTTGGGGGGCTGG CGCTCCGTTCAGGGCGGCTACGAGGGGGAATGTTACCCTGTGCGTAGCTT GTTGGAAGAACTGGACGTCACACGTGGCTCGCGCCCGTCGACACTTGCGG GGTTTGACGTTAATCGTCGCTTATACCGACTGTTTGATGTCTCCAATCGT AAAACAAAAATCGTGTTAATATAGGTGGTTTCTCGTCGGCCCCAAGCGCT CGGGGACTTCGGTGCACATCGATCCGCTCGGCACTAGCGCGTGGAACACG GTCGTGAGCGGGAGGAAGCTGTGGGTGCTGTTTCCCCCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig91710:764..1752+

>mRNA_H-elongata_contig91710.16630.1 ID=mRNA_H-elongata_contig91710.16630.1|Name=mRNA_H-elongata_contig91710.16630.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig91710:764..1752+ (Himanthalia elongata Himel1 dioecious)
CGCAGATACCGCCAGTGCAAGCTAAAGTGCGGAGAGGATGACGACGGCTA
CGCGGTTAAGCGCAGATACCGCCAGTGCAAGCTAAAGTGCGGAGAGGATG
ACGACGGCTACGCGGTTAAGGTGAAGGTGAAATACTTTTTGCGGTACATG
GAACACCAGAAAGATGACAGCCCGCTCTACGTCTTCGATAGCCACTTCGA
CGACCACGATGTTGCCAAGGGGCTGCTTGAGGACTTCCGCGTGCCCAGCT
ATTTCCCCGACGATCTCTTTTCCTTGGTGGGGGAAAGGCGCCGCCCACCG
TACAGGTGAAGGTGAAATACTTTTTGCGGTACATGGAACACCAGAAAGAT
GACAGCCCGCTCTACGTCTTCGATAGCCACTTCGACGACCACGATGTTGC
CAAGGGGCTGCTTGAGGACTTCCGCGTGCCCAGCTATTTCCCCGACGATC
TCTTTTCCTTGGTGGGGGAAAGGCGCCGCCCACCGTACAGGTGGTTTCTC
GTCGGCCCCAAGCGCTCGGGGACTTCGGTGCACATCGATCCGCTCGGCAC
TAGCGCGTGGAACACGGTCGTGAGCGGGAGGAAGCTGTGGGTGCTGTTTC
CCCCGGTGGTTTCTCGTCGGCCCCAAGCGCTCGGGGACTTCGGTGCACAT
CGATCCGCTCGGCACTAGCGCGTGGAACACGGTCGTGAGCGGGAGGAAGC
TGTGGGTGCTGTTTCCCCCG
back to top