mRNA_H-elongata_contig917.16628.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 176 bits (446), Expect = 2.750e-50 Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 4 CNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
CN N+V GN IST+GNECV+IKEG++GN +E+NICS QLD SGCY RGD NT R N+ T C GAGVRLGGW+VDG+ +G GN VYGNDF EG++KV QGDICGNTCEDGSC L+G
Sbjct: 224 CNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCSLVG 346
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 171 bits (434), Expect = 5.590e-50 Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 1
Query: 4 CNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
CNGNVV N+IST+GNECV+IKEGS+GN +E+N CS+QLD SGCY RGD NT R N+ + C GAGVRLGGW+VDG+ +G N VYGNDF+ G++KV QGDICGNTCE+GSC L G
Sbjct: 224 CNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSCSLTG 346
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 162 bits (410), Expect = 4.280e-45 Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 1
Query: 1 ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
+C N+V GN+I T+ NECV++KEG+ GN +E+N+C NQLD NSGCY RG+DN RNN + C GAGVRLGGW+VDG+ +G GN VY NDF D G++K+ +GQG ICGNTC C+LIG
Sbjct: 185 VCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIG 308
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.620e-38 Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 1
Query: 4 CNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGS 357
CN N + GN I+ NGNECV+IKEGSTG VEEN CS QLD++SGC+G RGD N R N A+ C G GVR+GGW+VDG+ +GQ N +Y N F G + QG +CGN+C+ G+
Sbjct: 197 CNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGGA 314
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: A0A6H5KRG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG5_9PHAE) HSP 1 Score: 114 bits (286), Expect = 3.690e-27 Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 1 ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNT 342
+C N + N T GNECV+IKEGS N VE N+C Q+D NSGC+G RG DNT R N CKGAG+R+GG DGY G+GNH+YGN + +G+ V + QG +C N+
Sbjct: 174 VCGYNWIHHNTFRTYGNECVDIKEGSANNLVEHNVCEQQVDPNSGCFGSRGSDNTFRWNEIAECKGAGIRVGG--EDGY--GEGNHMYGNTIKNAEKGAFNVMSPNQGTVCENS 283
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: UPI000379D4FF (DUF1565 domain-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI000379D4FF) HSP 1 Score: 108 bits (269), Expect = 1.390e-25 Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 28 NIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCED 351
N TNGNECV+IK+GS N VE NIC+ Q D NSG + V+GD N +RNNI+ + GAG+R+GG V+G +G N +YGN FFD ++KV Q ++CGN D
Sbjct: 242 NSFLTNGNECVDIKDGSVYNLVEHNICTGQKDPNSGGFNVQGDYNVVRNNISFANNGAGIRVGGHMVNGNQYGVENDIYGNVFFDNGHAAVKVMASPQSNVCGNDSYD 349
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: A0A261GV77_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GV77_9GAMM) HSP 1 Score: 107 bits (268), Expect = 1.940e-25 Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 13 NVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCED 351
N + N TNGNECV+IK+GS N VE NIC+ Q D NSG + ++GD N +RNNI+ + GAG+R+GG V+GY +G N VY N FFD ++K+ Q ++CGN D
Sbjct: 237 NWIHDNSFLTNGNECVDIKDGSEYNLVENNICTGQRDPNSGGFNIQGDRNILRNNISFANNGAGIRIGGHMVNGYQYGVENDVYSNVFFDNGNAAVKMMAYPQSNVCGNDSYD 349
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FZ38_ECTSI (Secreted protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ38_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.220e-24 Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 1 ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDIC 333
+C N + N T GNECV+IKEGS N VE N+C Q D NSGC G RG DNT R N CKGAG+R+GG DGY G+GNH++G + +G+ V + QG +C
Sbjct: 49 VCGYNWIHHNAFRTYGNECVDIKEGSANNLVENNVCEQQFDPNSGCVGSRGSDNTFRWNEIAECKGAGIRVGG--EDGY--GEGNHMHGKTIKNAEKGAFNVMSPNQGTVC 155
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: S3HLY8_9HYPH (Beta_helix domain-containing protein n=4 Tax=Rhizobium grahamii TaxID=1120045 RepID=S3HLY8_9HYPH) HSP 1 Score: 103 bits (257), Expect = 2.210e-24 Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 10 GNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCE 348
GN V N+I TNGNECV+IKEGS+ N VE N CS Q DK+S + RG++N R N ++ KGAGVRLGG D G N VYGN F G +K + QG +CGNT +
Sbjct: 162 GNHVHHNVIDTNGNECVDIKEGSSRNIVEHNRCSGQKDKHSAGFDSRGNNNVFRYNTVSNVKGAGVRLGG---DSETDGINNDVYGNTFRKVGVGVVKAQRGPQGKVCGNTLD 271
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: B5LWC7_9PHYC (Putative nosD copper-binding protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC7_9PHYC) HSP 1 Score: 106 bits (265), Expect = 2.400e-24 Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 19 VKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
V N I + GNECVE+KEG++ VE N+C++Q D NS G R DD T R N + C GAG+R+GG + +G+ N VYGN F D S+KVET C N+C DGSC + G
Sbjct: 213 VHDNTIDSQGNECVEVKEGASDVLVEYNVCTDQQDSNSAGMGSRTDDVTFRYNDISDCLGAGIRIGGHTIGDKTYGENNEVYGNVFHDTEYSSVKVETGKNHVFCENSCGDGSCTVRG 330 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig917.16628.1 >prot_H-elongata_contig917.16628.1 ID=prot_H-elongata_contig917.16628.1|Name=mRNA_H-elongata_contig917.16628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRback to top mRNA from alignment at H-elongata_contig917:13027..14169- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig917.16628.1 ID=mRNA_H-elongata_contig917.16628.1|Name=mRNA_H-elongata_contig917.16628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1143bp|location=Sequence derived from alignment at H-elongata_contig917:13027..14169- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig917:13027..14169- >mRNA_H-elongata_contig917.16628.1 ID=mRNA_H-elongata_contig917.16628.1|Name=mRNA_H-elongata_contig917.16628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig917:13027..14169- (Himanthalia elongata Himel1 dioecious)back to top |