mRNA_H-elongata_contig917.16628.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig917.16628.1
Unique NamemRNA_H-elongata_contig917.16628.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 2.750e-50
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    4 CNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
            CN N+V GN IST+GNECV+IKEG++GN +E+NICS QLD  SGCY  RGD NT R N+ T C GAGVRLGGW+VDG+ +G GN VYGNDF    EG++KV    QGDICGNTCEDGSC L+G
Sbjct:  224 CNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCEDGSCSLVG 346          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.590e-50
Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    4 CNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
            CNGNVV  N+IST+GNECV+IKEGS+GN +E+N CS+QLD  SGCY  RGD NT R N+ + C GAGVRLGGW+VDG+ +G  N VYGNDF+    G++KV    QGDICGNTCE+GSC L G
Sbjct:  224 CNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCEEGSCSLTG 346          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.280e-45
Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
            +C  N+V GN+I T+ NECV++KEG+ GN +E+N+C NQLD NSGCY  RG+DN  RNN  + C GAGVRLGGW+VDG+ +G GN VY NDF D   G++K+  +GQG ICGNTC    C+LIG
Sbjct:  185 VCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIG 308          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.620e-38
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    4 CNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGS 357
            CN N + GN I+ NGNECV+IKEGSTG  VEEN CS QLD++SGC+G RGD N  R N A+ C G GVR+GGW+VDG+ +GQ N +Y N F     G +      QG +CGN+C+ G+
Sbjct:  197 CNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQGGA 314          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: A0A6H5KRG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG5_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.690e-27
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNT 342
            +C  N +  N   T GNECV+IKEGS  N VE N+C  Q+D NSGC+G RG DNT R N    CKGAG+R+GG   DGY  G+GNH+YGN   +  +G+  V +  QG +C N+
Sbjct:  174 VCGYNWIHHNTFRTYGNECVDIKEGSANNLVEHNVCEQQVDPNSGCFGSRGSDNTFRWNEIAECKGAGIRVGG--EDGY--GEGNHMYGNTIKNAEKGAFNVMSPNQGTVCENS 283          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: UPI000379D4FF (DUF1565 domain-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI000379D4FF)

HSP 1 Score: 108 bits (269), Expect = 1.390e-25
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   28 NIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCED 351
            N   TNGNECV+IK+GS  N VE NIC+ Q D NSG + V+GD N +RNNI+ +  GAG+R+GG  V+G  +G  N +YGN FFD    ++KV    Q ++CGN   D
Sbjct:  242 NSFLTNGNECVDIKDGSVYNLVEHNICTGQKDPNSGGFNVQGDYNVVRNNISFANNGAGIRVGGHMVNGNQYGVENDIYGNVFFDNGHAAVKVMASPQSNVCGNDSYD 349          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: A0A261GV77_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GV77_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 1.940e-25
Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 1
Query:   13 NVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCED 351
            N +  N   TNGNECV+IK+GS  N VE NIC+ Q D NSG + ++GD N +RNNI+ +  GAG+R+GG  V+GY +G  N VY N FFD    ++K+    Q ++CGN   D
Sbjct:  237 NWIHDNSFLTNGNECVDIKDGSEYNLVENNICTGQRDPNSGGFNIQGDRNILRNNISFANNGAGIRIGGHMVNGYQYGVENDVYSNVFFDNGNAAVKMMAYPQSNVCGNDSYD 349          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: D7FZ38_ECTSI (Secreted protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ38_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.220e-24
Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDIC 333
            +C  N +  N   T GNECV+IKEGS  N VE N+C  Q D NSGC G RG DNT R N    CKGAG+R+GG   DGY  G+GNH++G    +  +G+  V +  QG +C
Sbjct:   49 VCGYNWIHHNAFRTYGNECVDIKEGSANNLVENNVCEQQFDPNSGCVGSRGSDNTFRWNEIAECKGAGIRVGG--EDGY--GEGNHMHGKTIKNAEKGAFNVMSPNQGTVC 155          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: S3HLY8_9HYPH (Beta_helix domain-containing protein n=4 Tax=Rhizobium grahamii TaxID=1120045 RepID=S3HLY8_9HYPH)

HSP 1 Score: 103 bits (257), Expect = 2.210e-24
Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   10 GNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCE 348
            GN V  N+I TNGNECV+IKEGS+ N VE N CS Q DK+S  +  RG++N  R N  ++ KGAGVRLGG   D    G  N VYGN F     G +K +   QG +CGNT +
Sbjct:  162 GNHVHHNVIDTNGNECVDIKEGSSRNIVEHNRCSGQKDKHSAGFDSRGNNNVFRYNTVSNVKGAGVRLGG---DSETDGINNDVYGNTFRKVGVGVVKAQRGPQGKVCGNTLD 271          
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Match: B5LWC7_9PHYC (Putative nosD copper-binding protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC7_9PHYC)

HSP 1 Score: 106 bits (265), Expect = 2.400e-24
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   19 VKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVRGDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSIKVETEGQGDICGNTCEDGSCELIG 372
            V  N I + GNECVE+KEG++   VE N+C++Q D NS   G R DD T R N  + C GAG+R+GG  +    +G+ N VYGN F D    S+KVET      C N+C DGSC + G
Sbjct:  213 VHDNTIDSQGNECVEVKEGASDVLVEYNVCTDQQDSNSAGMGSRTDDVTFRYNDISDCLGAGIRIGGHTIGDKTYGENNEVYGNVFHDTEYSSVKVETGKNHVFCENSCGDGSCTVRG 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig917.16628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXR8_ECTSI2.750e-5066.67FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI5.590e-5064.23FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZD2_ECTSI4.280e-4558.06FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE1.620e-3854.24Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5KRG5_9PHAE3.690e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000379D4FF1.390e-2550.00DUF1565 domain-containing protein n=1 Tax=Hahella ... [more]
A0A261GV77_9GAMM1.940e-2547.79DUF1565 domain-containing protein n=1 Tax=Hahella ... [more]
D7FZ38_ECTSI1.220e-2448.65Secreted protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
S3HLY8_9HYPH2.210e-2450.44Beta_helix domain-containing protein n=4 Tax=Rhizo... [more]
B5LWC7_9PHYC2.400e-2446.61Putative nosD copper-binding protein n=1 Tax=Feldm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig917contigH-elongata_contig917:13027..14169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score110.2
Seed ortholog evalue7.3e-22
Seed eggNOG ortholog1121935.AQXX01000140_gene1045
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig917.16628.1prot_H-elongata_contig917.16628.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig917 13027..14169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931315.137239-CDS-H-elongata_contig917:13026..131431622931315.137239-CDS-H-elongata_contig917:13026..13143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig917 13027..13143 -
1691679786.020887-CDS-H-elongata_contig917:13026..131431691679786.020887-CDS-H-elongata_contig917:13026..13143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig917 13027..13143 -
1622931315.1547208-CDS-H-elongata_contig917:13621..137091622931315.1547208-CDS-H-elongata_contig917:13621..13709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig917 13622..13709 -
1691679786.033981-CDS-H-elongata_contig917:13621..137091691679786.033981-CDS-H-elongata_contig917:13621..13709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig917 13622..13709 -
1622931315.168211-CDS-H-elongata_contig917:13999..141691622931315.168211-CDS-H-elongata_contig917:13999..14169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig917 14000..14169 -
1691679786.0443196-CDS-H-elongata_contig917:13999..141691691679786.0443196-CDS-H-elongata_contig917:13999..14169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig917 14000..14169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig917.16628.1

>prot_H-elongata_contig917.16628.1 ID=prot_H-elongata_contig917.16628.1|Name=mRNA_H-elongata_contig917.16628.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
ICNGNVVKGNIISTNGNECVEIKEGSTGNFVEENICSNQLDKNSGCYGVR
GDDNTIRNNIATSCKGAGVRLGGWDVDGYAHGQGNHVYGNDFFDCSEGSI
KVETEGQGDICGNTCEDGSCELIG*
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mRNA from alignment at H-elongata_contig917:13027..14169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig917.16628.1 ID=mRNA_H-elongata_contig917.16628.1|Name=mRNA_H-elongata_contig917.16628.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1143bp|location=Sequence derived from alignment at H-elongata_contig917:13027..14169- (Himanthalia elongata Himel1 dioecious)
ATCTGCAACGGCAACGTCGTAAAGGGAAACATCATCAGCACTAACGGTAA CGAGTGTGTGGAGATCAAGGAAGGCTCGACGGGGAACTTCGTAGAGGAGA ACATATGCAGCAATCAGCTAGACAAAAACTCTGGCTGCTACGGTGTCCGC GGAGACGACAACACGATAAGGTGCGATGACATTCGGAAATTCACCTGAAT TATGTTGAAATAATGTTTTCACTTCAATGCTAGCTCGTCGTTATGCATTA ACCTGCATTTGAATGCATTTTGGTGCTAATCAAACACAAGATTATAATGC AAGCTGAGGCCACTAAAGAATATGATTTGTGGCTTAACCGCGTCGACTCC CGCTTCCTCGGGAAGCTTCGGCCTCAGGTAGAGTTAGTTCCCCCGCCCCG AAAATAATCCCTCGAAAGCGCTTAAAGTCGTCTTCTGCGTGTACGTATTT GCCATCATAGAAACAATATCGCGACCAGCTGCAAGGGCGCTGGCGTACGT CTAGGAGGTTGGGACGTCGACGGCTATGCCCACGGACAGGGAAACCACGT AAGTACAAGATCATGCTGAGGTATTTGCGAGAGGGCATTAGTAATGAGAC CACGGACTTCAATCGGGGAGAATTTCTTGAACTCTTGCAGATAATATATA TATATATATATATATAATAGAATTGAAACTTTGGTGAACATTGATTTTGT TTACGAAGGAAAACAGGTGTTAGGACATGGACACTGTATCAATATTTAAT AAACTAGGAACTTATCCAAACCCTTCGAACATCCACACCCTCTTTGCACC ATAAGAGGTGAAGTCCATGGGACGACCTATCGCCAGATTTGAGTGCCGAG CGGTGACTTAAACACCCGCTATGCGACAAATATTTGTTGCCTCATCGTAA ATATCGTAAATGATATATTTGAGAATTCAATGGCTCTCTGAGTGCGCGTG TTGCGCAAACATCGCGTACGTCACGACTAGCGTTTAAGTGAATCCCCCGC CGGCTGTCACTGCCTCCACGTCTTAGGTGTACGGCAATGACTTCTTTGAC TGCAGCGAAGGGTCGATCAAGGTGGAAACTGAAGGCCAGGGTGATATCTG CGGTAATACATGCGAAGATGGAAGTTGCGAGCTAATAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig917:13027..14169-

>mRNA_H-elongata_contig917.16628.1 ID=mRNA_H-elongata_contig917.16628.1|Name=mRNA_H-elongata_contig917.16628.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig917:13027..14169- (Himanthalia elongata Himel1 dioecious)
ATCTGCAACGGCAACGTCGTAAAGGGAAACATCATCAGCACTAACGGTAA
CGAGTGTGTGGAGATCAAGGAAGGCTCGACGGGGAACTTCGTAGAGGAGA
ACATATGCAGCAATCAGCTAGACAAAAACTCTGGCTGCTACGGTGTCCGC
GGAGACGACAACACGATAAGATCTGCAACGGCAACGTCGTAAAGGGAAAC
ATCATCAGCACTAACGGTAACGAGTGTGTGGAGATCAAGGAAGGCTCGAC
GGGGAACTTCGTAGAGGAGAACATATGCAGCAATCAGCTAGACAAAAACT
CTGGCTGCTACGGTGTCCGCGGAGACGACAACACGATAAGAAACAATATC
GCGACCAGCTGCAAGGGCGCTGGCGTACGTCTAGGAGGTTGGGACGTCGA
CGGCTATGCCCACGGACAGGGAAACCACAAACAATATCGCGACCAGCTGC
AAGGGCGCTGGCGTACGTCTAGGAGGTTGGGACGTCGACGGCTATGCCCA
CGGACAGGGAAACCACGTGTACGGCAATGACTTCTTTGACTGCAGCGAAG
GGTCGATCAAGGTGGAAACTGAAGGCCAGGGTGATATCTGCGGTAATACA
TGCGAAGATGGAAGTTGCGAGCTAATAGGGTGAGTGTACGGCAATGACTT
CTTTGACTGCAGCGAAGGGTCGATCAAGGTGGAAACTGAAGGCCAGGGTG
ATATCTGCGGTAATACATGCGAAGATGGAAGTTGCGAGCTAATAGGGTGA
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